RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 CAMK4Q16566 473 aa12.03□□□□□ -0.48
MCF2-209ENST00000520602 SEC62Q99442 399 aaKnown RBP12.03□□□□□ -0.48
MCF2-209ENST00000520602 WDR17Q8IZU2 1322 aa12.03□□□□□ -0.48
MCF2-209ENST00000520602 EYA2O00167 538 aa12.02□□□□□ -0.48
MCF2-209ENST00000520602 SLC27A2O14975 620 aa12.02□□□□□ -0.48
MCF2-209ENST00000520602 PRIM1P49642 420 aaKnown RBP12.02□□□□□ -0.48
MCF2-209ENST00000520602 ADCK5Q3MIX3 580 aa12.02□□□□□ -0.48
MCF2-209ENST00000520602 CCDC191Q8NCU4 936 aa12.02□□□□□ -0.48
MCF2-209ENST00000520602 CHMP4CQ96CF2 233 aa12.02□□□□□ -0.48
MCF2-209ENST00000520602 LSG1Q9H089 658 aaKnown RBP12.02□□□□□ -0.48
MCF2-209ENST00000520602 CTNNA3Q9UI47 895 aa12.02□□□□□ -0.48
MCF2-209ENST00000520602 IMMTQ16891 758 aaKnown RBP12.02□□□□□ -0.49
MCF2-209ENST00000520602 DBNLQ9UJU6 430 aaKnown RBP12.02□□□□□ -0.49
MCF2-209ENST00000520602 DNM1Q05193 864 aaKnown RBP12.02□□□□□ -0.49
MCF2-209ENST00000520602 ATP2B3Q16720 1220 aa12.02□□□□□ -0.49
MCF2-209ENST00000520602 VPS53Q5VIR6 699 aa12.02□□□□□ -0.49
MCF2-209ENST00000520602 HMG20BQ9P0W2 317 aa12.02□□□□□ -0.49
MCF2-209ENST00000520602 KIF13AQ9H1H9 1805 aa12.01□□□□□ -0.49
MCF2-209ENST00000520602 LMBRD1Q9NUN5 540 aa12.01□□□□□ -0.49
MCF2-209ENST00000520602 ABCF2Q9UG63 623 aa12.01□□□□□ -0.49
MCF2-209ENST00000520602 LRRC24Q50LG9 513 aa12.01□□□□□ -0.49
MCF2-209ENST00000520602 Q6ZUG5 572 aa12.01□□□□□ -0.49
MCF2-209ENST00000520602 DDB1Q16531 1140 aa12.01□□□□□ -0.49
MCF2-209ENST00000520602 SASS6Q6UVJ0 657 aa12.01□□□□□ -0.49
MCF2-209ENST00000520602 CCDC73Q6ZRK6 1079 aa12.01□□□□□ -0.49
MCF2-209ENST00000520602 DZIP3Q86Y13 1208 aaKnown RBP12.01□□□□□ -0.49
MCF2-209ENST00000520602 BECN2A8MW95 431 aa12□□□□□ -0.49
MCF2-209ENST00000520602 ATP6V1AP38606 617 aa12□□□□□ -0.49
MCF2-209ENST00000520602 COPRSQ9NQ92 184 aa12□□□□□ -0.49
MCF2-209ENST00000520602 IRS4O14654 1257 aaPredicted RBP12□□□□□ -0.49
MCF2-209ENST00000520602 F13A1P00488 732 aa12□□□□□ -0.49
MCF2-209ENST00000520602 FAM173BQ6P4H8 233 aa12□□□□□ -0.49
MCF2-209ENST00000520602 GAS2L3Q86XJ1 694 aa12□□□□□ -0.49
MCF2-209ENST00000520602 AIDAQ96BJ3 306 aa12□□□□□ -0.49
MCF2-209ENST00000520602 CARD10Q9BWT7 1032 aa12□□□□□ -0.49
MCF2-209ENST00000520602 IL25Q9H293 177 aa12□□□□□ -0.49
MCF2-209ENST00000520602 GOLGA6L19H0YKK7 550 aa12□□□□□ -0.49
MCF2-209ENST00000520602 IGHMBP2P38935 993 aaKnown RBP12□□□□□ -0.49
MCF2-209ENST00000520602 PTPN12Q05209 780 aaKnown RBP12□□□□□ -0.49
MCF2-209ENST00000520602 MTX1Q13505 466 aa12□□□□□ -0.49
MCF2-209ENST00000520602 TRIM29Q14134 588 aa12□□□□□ -0.49
MCF2-209ENST00000520602 NGLY1Q96IV0 654 aa12□□□□□ -0.49
MCF2-209ENST00000520602 LRP2BPQ9P2M1 347 aa12□□□□□ -0.49
MCF2-209ENST00000520602 C3P01024 1663 aa11.99□□□□□ -0.49
MCF2-209ENST00000520602 ATP5JP18859 108 aa11.99□□□□□ -0.49
MCF2-209ENST00000520602 ZSCAN25Q6NSZ9 544 aa11.99□□□□□ -0.49
MCF2-209ENST00000520602 PUS3Q9BZE2 481 aaKnown RBP11.99□□□□□ -0.49
MCF2-209ENST00000520602 ME1P48163 572 aa11.99□□□□□ -0.49
MCF2-209ENST00000520602 MEX3CQ5U5Q3 659 aaKnown RBP11.99□□□□□ -0.49
MCF2-209ENST00000520602 SDF4Q9BRK5 362 aa11.99□□□□□ -0.49
MCF2-209ENST00000520602 IQSEC3Q9UPP2 1182 aaPredicted RBP11.99□□□□□ -0.49
MCF2-209ENST00000520602 NCAPD2Q15021 1401 aa11.99□□□□□ -0.49
MCF2-209ENST00000520602 ZNF213O14771 459 aa11.99□□□□□ -0.49
MCF2-209ENST00000520602 BRD1O95696 1058 aa11.99□□□□□ -0.49
MCF2-209ENST00000520602 TCIRG1Q13488 830 aa11.99□□□□□ -0.49
MCF2-209ENST00000520602 TNMDQ9H2S6 317 aa11.99□□□□□ -0.49
MCF2-209ENST00000520602 ATP2B1P20020 1258 aa11.98□□□□□ -0.49
MCF2-209ENST00000520602 ERICH2A1L162 156 aa11.98□□□□□ -0.49
MCF2-209ENST00000520602 DHX16O60231 1041 aaKnown RBP11.98□□□□□ -0.49
MCF2-209ENST00000520602 GADD45BO75293 160 aaPredicted RBP11.98□□□□□ -0.49
MCF2-209ENST00000520602 LETM1O95202 739 aaPredicted RBP11.98□□□□□ -0.49
MCF2-209ENST00000520602 HMGB1P09429 215 aaKnown RBP11.98□□□□□ -0.49
MCF2-209ENST00000520602 HCLS1P14317 486 aaPredicted RBP11.98□□□□□ -0.49
MCF2-209ENST00000520602 AKAP17AQ02040 695 aaKnown RBP11.98□□□□□ -0.49
MCF2-209ENST00000520602 KBTBD3Q8NAB2 608 aa11.98□□□□□ -0.49
MCF2-209ENST00000520602 PDIA6Q15084 440 aa11.98□□□□□ -0.49
MCF2-209ENST00000520602 ME3Q16798 604 aa11.98□□□□□ -0.49
MCF2-209ENST00000520602 CCDC183Q5T5S1 534 aa11.98□□□□□ -0.49
MCF2-209ENST00000520602 GIMAP6Q6P9H5 292 aa11.98□□□□□ -0.49
MCF2-209ENST00000520602 ZNF589Q86UQ0 364 aaPredicted RBP11.98□□□□□ -0.49
MCF2-209ENST00000520602 MON2Q7Z3U7 1717 aa11.98□□□□□ -0.49
MCF2-209ENST00000520602 RNF113AO15541 343 aaKnown RBP11.97□□□□□ -0.49
MCF2-209ENST00000520602 ITGA6P23229 1130 aa11.97□□□□□ -0.49
MCF2-209ENST00000520602 SLC9C2Q5TAH2 1124 aa11.97□□□□□ -0.49
MCF2-209ENST00000520602 CKAP2LQ8IYA6 745 aa11.97□□□□□ -0.49
MCF2-209ENST00000520602 NBPF26B4DH59 902 aa11.97□□□□□ -0.49
MCF2-209ENST00000520602 TDO2P48775 406 aa11.97□□□□□ -0.49
MCF2-209ENST00000520602 NBPF14Q5TI25 921 aa11.97□□□□□ -0.49
MCF2-209ENST00000520602 NBPF10Q6P3W6 841 aaKnown RBP11.97□□□□□ -0.49
MCF2-209ENST00000520602 LRSAM1Q6UWE0 723 aa11.97□□□□□ -0.49
MCF2-209ENST00000520602 NBPF15Q8N660 670 aa11.97□□□□□ -0.49
MCF2-209ENST00000520602 SPC24Q8NBT2 197 aa11.97□□□□□ -0.49
MCF2-209ENST00000520602 XAGE2Q96GT9 111 aa11.97□□□□□ -0.49
MCF2-209ENST00000520602 NUP62CLQ9H1M0 184 aa11.97□□□□□ -0.49
MCF2-209ENST00000520602 RAI14Q9P0K7 980 aa11.97□□□□□ -0.49
MCF2-209ENST00000520602 HEG1Q9ULI3 1381 aa11.97□□□□□ -0.49
MCF2-209ENST00000520602 GOLGA6L6A8MZA4 724 aa11.97□□□□□ -0.49
MCF2-209ENST00000520602 CCDC192P0DO97 292 aa11.97□□□□□ -0.49
MCF2-209ENST00000520602 RPS6KB1P23443 525 aa11.97□□□□□ -0.49
MCF2-209ENST00000520602 UBE2HP62256 183 aa11.97□□□□□ -0.49
MCF2-209ENST00000520602 APOBRQ0VD83 1088 aa11.97□□□□□ -0.49
MCF2-209ENST00000520602 STK38Q15208 465 aa11.97□□□□□ -0.49
MCF2-209ENST00000520602 ARID3AQ99856 593 aa11.97□□□□□ -0.49
MCF2-209ENST00000520602 PXDNQ92626 1479 aa11.96□□□□□ -0.49
MCF2-209ENST00000520602 TNS3Q68CZ2 1445 aa11.96□□□□□ -0.49
MCF2-209ENST00000520602 KINO60870 393 aaKnown RBP11.96□□□□□ -0.49
MCF2-209ENST00000520602 CCDC82Q8N4S0 544 aa11.96□□□□□ -0.49
MCF2-209ENST00000520602 PIGBQ92521 554 aa11.96□□□□□ -0.49
MCF2-209ENST00000520602 SCAND2PQ9GZW5 306 aaPredicted RBP11.96□□□□□ -0.49
MCF2-209ENST00000520602 TMEM63CQ9P1W3 806 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms