RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 MYL6BP14649 208 aa14.86□□□□□ -0.03
LIMCH1-221ENST00000515785 RBM26Q5T8P6 1007 aaKnown RBP14.86□□□□□ -0.03
LIMCH1-221ENST00000515785 DPP8Q6V1X1 898 aaPredicted RBP14.86□□□□□ -0.03
LIMCH1-221ENST00000515785 KIF6Q6ZMV9 814 aa14.86□□□□□ -0.03
LIMCH1-221ENST00000515785 SAMD7Q7Z3H4 446 aa14.86□□□□□ -0.03
LIMCH1-221ENST00000515785 C2orf69Q8N8R5 385 aa14.86□□□□□ -0.03
LIMCH1-221ENST00000515785 SUPT20HQ8NEM7 779 aa14.86□□□□□ -0.03
LIMCH1-221ENST00000515785 MAP3K15Q6ZN16 1313 aa14.86□□□□□ -0.03
LIMCH1-221ENST00000515785 UBN2Q6ZU65 1347 aa14.86□□□□□ -0.03
LIMCH1-221ENST00000515785 ERVV-1B6SEH8 477 aa14.85□□□□□ -0.03
LIMCH1-221ENST00000515785 TBC1D10BQ4KMP7 808 aaPredicted RBP14.85□□□□□ -0.03
LIMCH1-221ENST00000515785 CTU1Q7Z7A3 348 aaKnown RBP14.85□□□□□ -0.03
LIMCH1-221ENST00000515785 MICALL2Q8IY33 904 aa14.85□□□□□ -0.03
LIMCH1-221ENST00000515785 MPNDQ8N594 471 aa14.85□□□□□ -0.03
LIMCH1-221ENST00000515785 CCDC102AQ96A19 550 aa14.85□□□□□ -0.03
LIMCH1-221ENST00000515785 NLRP3Q96P20 1036 aa14.85□□□□□ -0.03
LIMCH1-221ENST00000515785 VPS33BQ9H267 617 aa14.85□□□□□ -0.03
LIMCH1-221ENST00000515785 GBA2Q9HCG7 927 aaPredicted RBP14.85□□□□□ -0.03
LIMCH1-221ENST00000515785 SAGE1Q9NXZ1 904 aa14.85□□□□□ -0.03
LIMCH1-221ENST00000515785 ZBTB12Q9Y330 459 aaPredicted RBP14.85□□□□□ -0.03
LIMCH1-221ENST00000515785 COL3A1P02461 1466 aaPredicted RBP14.84□□□□□ -0.03
LIMCH1-221ENST00000515785 KRT26Q7Z3Y9 468 aa14.84□□□□□ -0.03
LIMCH1-221ENST00000515785 RSPH6AQ9H0K4 717 aa14.84□□□□□ -0.03
LIMCH1-221ENST00000515785 HPS5Q9UPZ3 1129 aa14.84□□□□□ -0.03
LIMCH1-221ENST00000515785 RIC1Q4ADV7 1423 aa14.83□□□□□ -0.03
LIMCH1-221ENST00000515785 ADM5C9JUS6 153 aa14.83□□□□□ -0.04
LIMCH1-221ENST00000515785 PER1O15534 1290 aaPredicted RBP14.83□□□□□ -0.04
LIMCH1-221ENST00000515785 NTSR2O95665 410 aa14.83□□□□□ -0.04
LIMCH1-221ENST00000515785 ZNF34Q8IZ26 560 aa14.83□□□□□ -0.04
LIMCH1-221ENST00000515785 CSRNP1Q96S65 589 aa14.83□□□□□ -0.04
LIMCH1-221ENST00000515785 RTFDC1Q9BY42 306 aaPredicted RBP14.83□□□□□ -0.04
LIMCH1-221ENST00000515785 U3KPZ7 1027 aaPredicted RBP14.83□□□□□ -0.04
LIMCH1-221ENST00000515785 ABCC4O15439 1325 aa14.83□□□□□ -0.04
LIMCH1-221ENST00000515785 YDJCA8MPS7 323 aa14.82□□□□□ -0.04
LIMCH1-221ENST00000515785 KIAA2012Q0VF49 1180 aa14.82□□□□□ -0.04
LIMCH1-221ENST00000515785 TAF7Q15545 349 aaPredicted RBP14.82□□□□□ -0.04
LIMCH1-221ENST00000515785 PPP1R42Q7Z4L9 355 aa14.82□□□□□ -0.04
LIMCH1-221ENST00000515785 SP8Q8IXZ3 490 aa14.82□□□□□ -0.04
LIMCH1-221ENST00000515785 EGFRP00533 1210 aa14.81□□□□□ -0.04
LIMCH1-221ENST00000515785 DCPSQ96C86 337 aaKnown RBP14.81□□□□□ -0.04
LIMCH1-221ENST00000515785 CDHR2Q9BYE9 1310 aa14.81□□□□□ -0.04
LIMCH1-221ENST00000515785 BBOX1O75936 387 aa14.8□□□□□ -0.04
LIMCH1-221ENST00000515785 HDAC9Q9UKV0 1011 aa14.8□□□□□ -0.04
LIMCH1-221ENST00000515785 TAF1P21675 1872 aa14.8□□□□□ -0.04
LIMCH1-221ENST00000515785 PSMD14O00487 310 aa14.79□□□□□ -0.04
LIMCH1-221ENST00000515785 RIMBP2O15034 1052 aa14.79□□□□□ -0.04
LIMCH1-221ENST00000515785 U2AF1L5P0DN76 240 aaPredicted RBP14.79□□□□□ -0.04
LIMCH1-221ENST00000515785 HCLS1P14317 486 aaPredicted RBP14.79□□□□□ -0.04
LIMCH1-221ENST00000515785 U2AF1Q01081 240 aaKnown RBP eCLIP14.79□□□□□ -0.04
LIMCH1-221ENST00000515785 UTP14AQ9BVJ6 771 aaKnown RBP14.79□□□□□ -0.04
LIMCH1-221ENST00000515785 PCGF6Q9BYE7 350 aa14.79□□□□□ -0.04
LIMCH1-221ENST00000515785 LAMB4A4D0S4 1761 aa14.78□□□□□ -0.04
LIMCH1-221ENST00000515785 IBTKQ9P2D0 1353 aaPredicted RBP14.78□□□□□ -0.04
LIMCH1-221ENST00000515785 TBC1D8O95759 1140 aa14.78□□□□□ -0.04
LIMCH1-221ENST00000515785 SLC10A3P09131 477 aa14.78□□□□□ -0.04
LIMCH1-221ENST00000515785 SLC10A5Q5PT55 438 aa14.78□□□□□ -0.04
LIMCH1-221ENST00000515785 GIGYF2Q6Y7W6 1299 aaKnown RBP14.78□□□□□ -0.04
LIMCH1-221ENST00000515785 DPF2Q92785 391 aa14.78□□□□□ -0.04
LIMCH1-221ENST00000515785 ZNF428Q96B54 188 aa14.78□□□□□ -0.04
LIMCH1-221ENST00000515785 THUMPD2Q9BTF0 503 aaKnown RBP14.78□□□□□ -0.04
LIMCH1-221ENST00000515785 DBNDD1Q9H9R9 158 aa14.78□□□□□ -0.04
LIMCH1-221ENST00000515785 KCNQ5Q9NR82 932 aa14.78□□□□□ -0.04
LIMCH1-221ENST00000515785 DDX46Q7L014 1031 aaKnown RBP14.77□□□□□ -0.05
LIMCH1-221ENST00000515785 CFAP53Q96M91 514 aa14.77□□□□□ -0.05
LIMCH1-221ENST00000515785 NUDCQ9Y266 331 aa14.77□□□□□ -0.05
LIMCH1-221ENST00000515785 LAMB2P55268 1798 aa14.76□□□□□ -0.05
LIMCH1-221ENST00000515785 ASTN2O75129 1339 aaPredicted RBP14.76□□□□□ -0.05
LIMCH1-221ENST00000515785 HTATSF1O43719 755 aaKnown RBP14.76□□□□□ -0.05
LIMCH1-221ENST00000515785 DOK7Q18PE1 504 aa14.76□□□□□ -0.05
LIMCH1-221ENST00000515785 PARP10Q53GL7 1025 aa14.76□□□□□ -0.05
LIMCH1-221ENST00000515785 ZNF296Q8WUU4 475 aaPredicted RBP14.76□□□□□ -0.05
LIMCH1-221ENST00000515785 EIF4A1P60842 406 aaKnown RBP14.75□□□□□ -0.05
LIMCH1-221ENST00000515785 WASHC4Q2M389 1173 aa14.75□□□□□ -0.05
LIMCH1-221ENST00000515785 HABP4Q5JVS0 413 aaKnown RBP14.75□□□□□ -0.05
LIMCH1-221ENST00000515785 RASAL3Q86YV0 1011 aa14.75□□□□□ -0.05
LIMCH1-221ENST00000515785 SULF1Q8IWU6 871 aa14.75□□□□□ -0.05
LIMCH1-221ENST00000515785 GCC1Q96CN9 775 aa14.75□□□□□ -0.05
LIMCH1-221ENST00000515785 CDCA5Q96FF9 252 aa14.75□□□□□ -0.05
LIMCH1-221ENST00000515785 C6orf229H3BNL8 230 aa14.74□□□□□ -0.05
LIMCH1-221ENST00000515785 GRAPQ13588 217 aa14.74□□□□□ -0.05
LIMCH1-221ENST00000515785 PKN2Q16513 984 aaKnown RBP14.74□□□□□ -0.05
LIMCH1-221ENST00000515785 GRAPLQ8TC17 118 aaPredicted RBP14.74□□□□□ -0.05
LIMCH1-221ENST00000515785 GGA3Q9NZ52 723 aa14.74□□□□□ -0.05
LIMCH1-221ENST00000515785 NSFL1CQ9UNZ2 370 aaKnown RBP14.74□□□□□ -0.05
LIMCH1-221ENST00000515785 ANXA1P04083 346 aa14.73□□□□□ -0.05
LIMCH1-221ENST00000515785 EIF2S2P20042 333 aaKnown RBP14.73□□□□□ -0.05
LIMCH1-221ENST00000515785 KIF4BQ2VIQ3 1234 aa14.73□□□□□ -0.05
LIMCH1-221ENST00000515785 MOB2Q70IA6 237 aa14.73□□□□□ -0.05
LIMCH1-221ENST00000515785 REM2Q8IYK8 340 aaPredicted RBP14.73□□□□□ -0.05
LIMCH1-221ENST00000515785 UBE2Q2LH0YL09 131 aa14.72□□□□□ -0.05
LIMCH1-221ENST00000515785 ECE2O60344 883 aa14.72□□□□□ -0.05
LIMCH1-221ENST00000515785 PNISRQ8TF01 805 aaKnown RBP14.72□□□□□ -0.05
LIMCH1-221ENST00000515785 TRMT112Q9UI30 125 aaKnown RBP14.72□□□□□ -0.05
LIMCH1-221ENST00000515785 SCAF8Q9UPN6 1271 aaKnown RBP14.72□□□□□ -0.05
LIMCH1-221ENST00000515785 ANKRD36CQ5JPF3 1778 aa14.72□□□□□ -0.05
LIMCH1-221ENST00000515785 KDM3BQ7LBC6 1761 aa14.71□□□□□ -0.05
LIMCH1-221ENST00000515785 RPS12P25398 132 aaKnown RBP14.71□□□□□ -0.05
LIMCH1-221ENST00000515785 AIMP1Q12904 312 aaKnown RBP14.71□□□□□ -0.05
LIMCH1-221ENST00000515785 MKRN3Q13064 507 aaKnown RBP14.71□□□□□ -0.05
LIMCH1-221ENST00000515785 ANGEL2Q5VTE6 544 aaKnown RBP14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms