RNA–Protein interactions for RNA: ENST00000513821.5

SGCA-209, Transcript of sarcoglycan alpha, humanhuman

TSL 2

Gene SGCA, Length 1,090 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCA-209ENST00000513821 DNAAF4Q8WXU2 420 aa17.65■□□□□ 0.42
SGCA-209ENST00000513821 CACNA1SQ13698 1873 aa17.65■□□□□ 0.42
SGCA-209ENST00000513821 TNRC6CQ9HCJ0 1690 aaKnown RBP17.64■□□□□ 0.42
SGCA-209ENST00000513821 RPS8P62241 208 aaKnown RBP17.64■□□□□ 0.41
SGCA-209ENST00000513821 CCDC152Q4G0S7 254 aa17.64■□□□□ 0.41
SGCA-209ENST00000513821 MPNDQ8N594 471 aa17.64■□□□□ 0.41
SGCA-209ENST00000513821 CDHR2Q9BYE9 1310 aa17.64■□□□□ 0.41
SGCA-209ENST00000513821 NEURL1BA8MQ27 555 aa17.63■□□□□ 0.41
SGCA-209ENST00000513821 LINS1Q8NG48 757 aa17.63■□□□□ 0.41
SGCA-209ENST00000513821 RBM46Q8TBY0 533 aaKnown RBP17.63■□□□□ 0.41
SGCA-209ENST00000513821 DICER1Q9UPY3 1922 aaKnown RBP17.62■□□□□ 0.41
SGCA-209ENST00000513821 H7C1W4 665 aa17.62■□□□□ 0.41
SGCA-209ENST00000513821 DPP8Q6V1X1 898 aaPredicted RBP17.62■□□□□ 0.41
SGCA-209ENST00000513821 LARGE2Q8N3Y3 721 aa17.62■□□□□ 0.41
SGCA-209ENST00000513821 RTFDC1Q9BY42 306 aaPredicted RBP17.62■□□□□ 0.41
SGCA-209ENST00000513821 EIF6P56537 245 aaKnown RBP17.61■□□□□ 0.41
SGCA-209ENST00000513821 CWF19L2Q2TBE0 894 aaKnown RBP17.61■□□□□ 0.41
SGCA-209ENST00000513821 MIER1Q8N108 512 aa17.61■□□□□ 0.41
SGCA-209ENST00000513821 JARID2Q92833 1246 aaPredicted RBP17.61■□□□□ 0.41
SGCA-209ENST00000513821 FZD9O00144 591 aa17.6■□□□□ 0.41
SGCA-209ENST00000513821 DDNO94850 711 aaPredicted RBP17.6■□□□□ 0.41
SGCA-209ENST00000513821 FSTL1Q12841 308 aa17.6■□□□□ 0.41
SGCA-209ENST00000513821 GCKRQ14397 625 aa17.6■□□□□ 0.41
SGCA-209ENST00000513821 CELF1Q92879 486 aaKnown RBP17.6■□□□□ 0.41
SGCA-209ENST00000513821 PPIP5K2O43314 1243 aa17.59■□□□□ 0.41
SGCA-209ENST00000513821 NIM1KQ8IY84 436 aa17.59■□□□□ 0.41
SGCA-209ENST00000513821 TRMT2AQ8IZ69 625 aaKnown RBP17.59■□□□□ 0.41
SGCA-209ENST00000513821 SNED1Q8TER0 1413 aa17.58■□□□□ 0.41
SGCA-209ENST00000513821 IQCA1LA6NCM1 817 aa17.58■□□□□ 0.4
SGCA-209ENST00000513821 CT47B1P0C2W7 299 aaPredicted RBP17.58■□□□□ 0.4
SGCA-209ENST00000513821 UBE3BQ7Z3V4 1068 aa17.58■□□□□ 0.4
SGCA-209ENST00000513821 PLA2G12BQ9BX93 195 aa17.58■□□□□ 0.4
SGCA-209ENST00000513821 NSFL1CQ9UNZ2 370 aaKnown RBP17.58■□□□□ 0.4
SGCA-209ENST00000513821 POTECB2RU33 542 aa17.57■□□□□ 0.4
SGCA-209ENST00000513821 F6X3S4 739 aa17.57■□□□□ 0.4
SGCA-209ENST00000513821 HSPA6P17066 643 aa17.57■□□□□ 0.4
SGCA-209ENST00000513821 CTSWP56202 376 aa17.57■□□□□ 0.4
SGCA-209ENST00000513821 BEND3Q5T5X7 828 aa17.57■□□□□ 0.4
SGCA-209ENST00000513821 ANKRD18AQ8IVF6 992 aa17.57■□□□□ 0.4
SGCA-209ENST00000513821 GPC2Q8N158 579 aa17.57■□□□□ 0.4
SGCA-209ENST00000513821 SMC1BQ8NDV3 1235 aa17.57■□□□□ 0.4
SGCA-209ENST00000513821 TTLL11Q8NHH1 800 aa17.57■□□□□ 0.4
SGCA-209ENST00000513821 CDCA7LQ96GN5 454 aa17.57■□□□□ 0.4
SGCA-209ENST00000513821 L3MBTL3Q96JM7 780 aaPredicted RBP17.57■□□□□ 0.4
SGCA-209ENST00000513821 CDC5LQ99459 802 aaKnown RBP17.57■□□□□ 0.4
SGCA-209ENST00000513821 SEC31BQ9NQW1 1179 aa17.57■□□□□ 0.4
SGCA-209ENST00000513821 ALDH1L1O75891 902 aa17.56■□□□□ 0.4
SGCA-209ENST00000513821 ALDH1L2Q3SY69 923 aa17.56■□□□□ 0.4
SGCA-209ENST00000513821 ZNRF3Q9ULT6 936 aa17.56■□□□□ 0.4
SGCA-209ENST00000513821 LAMB2P55268 1798 aa17.56■□□□□ 0.4
SGCA-209ENST00000513821 KIAA2012Q0VF49 1180 aa17.55■□□□□ 0.4
SGCA-209ENST00000513821 AOC3Q16853 763 aa17.55■□□□□ 0.4
SGCA-209ENST00000513821 WASHC4Q2M389 1173 aa17.55■□□□□ 0.4
SGCA-209ENST00000513821 MRPL50Q8N5N7 158 aaKnown RBP17.55■□□□□ 0.4
SGCA-209ENST00000513821 EYA3Q99504 573 aa17.55■□□□□ 0.4
SGCA-209ENST00000513821 SRCIN1Q9C0H9 1055 aa17.55■□□□□ 0.4
SGCA-209ENST00000513821 DDX60Q8IY21 1712 aaKnown RBP17.55■□□□□ 0.4
SGCA-209ENST00000513821 C6orf229H3BNL8 230 aa17.54■□□□□ 0.4
SGCA-209ENST00000513821 SLC4A10Q6U841 1118 aa17.54■□□□□ 0.4
SGCA-209ENST00000513821 CCDC85AQ96PX6 553 aaPredicted RBP17.54■□□□□ 0.4
SGCA-209ENST00000513821 PODXL2Q9NZ53 605 aa17.54■□□□□ 0.4
SGCA-209ENST00000513821 C9orf78Q9NZ63 289 aaPredicted RBP17.54■□□□□ 0.4
SGCA-209ENST00000513821 PTPRCP08575 1304 aa17.53■□□□□ 0.4
SGCA-209ENST00000513821 ZNF541Q9H0D2 1346 aa17.53■□□□□ 0.4
SGCA-209ENST00000513821 TIAM2Q8IVF5 1701 aa17.53■□□□□ 0.4
SGCA-209ENST00000513821 CSF1RP07333 972 aa17.53■□□□□ 0.4
SGCA-209ENST00000513821 CASP7P55210 303 aa17.53■□□□□ 0.4
SGCA-209ENST00000513821 GPSM2P81274 684 aa17.53■□□□□ 0.4
SGCA-209ENST00000513821 TNIP1Q15025 636 aa17.53■□□□□ 0.4
SGCA-209ENST00000513821 SSH1Q8WYL5 1049 aa17.53■□□□□ 0.4
SGCA-209ENST00000513821 ZC3H12CQ9C0D7 883 aaKnown RBP17.53■□□□□ 0.4
SGCA-209ENST00000513821 BSDC1Q9NW68 430 aaPredicted RBP17.53■□□□□ 0.4
SGCA-209ENST00000513821 ANKIB1Q9P2G1 1089 aa17.53■□□□□ 0.4
SGCA-209ENST00000513821 HACL1Q9UJ83 578 aa17.53■□□□□ 0.4
SGCA-209ENST00000513821 GJA3Q9Y6H8 435 aa17.53■□□□□ 0.4
SGCA-209ENST00000513821 RTL9Q8NET4 1388 aa17.53■□□□□ 0.4
SGCA-209ENST00000513821 WDR90Q96KV7 1748 aa17.52■□□□□ 0.4
SGCA-209ENST00000513821 APLP1P51693 650 aa17.52■□□□□ 0.4
SGCA-209ENST00000513821 PNMA8AQ86V59 439 aaPredicted RBP17.52■□□□□ 0.4
SGCA-209ENST00000513821 GREM2Q9H772 168 aa17.52■□□□□ 0.4
SGCA-209ENST00000513821 GRM8O00222 908 aa17.51■□□□□ 0.39
SGCA-209ENST00000513821 LMOD1P29536 600 aaPredicted RBP17.51■□□□□ 0.39
SGCA-209ENST00000513821 IGHMBP2P38935 993 aaKnown RBP17.51■□□□□ 0.39
SGCA-209ENST00000513821 SLC51AQ86UW1 340 aa17.51■□□□□ 0.39
SGCA-209ENST00000513821 TBC1D16Q8TBP0 767 aa17.51■□□□□ 0.39
SGCA-209ENST00000513821 TAF1DQ9H5J8 278 aaPredicted RBP17.51■□□□□ 0.39
SGCA-209ENST00000513821 POLLQ9UGP5 575 aa17.51■□□□□ 0.39
SGCA-209ENST00000513821 GGA1Q9UJY5 639 aa17.51■□□□□ 0.39
SGCA-209ENST00000513821 TAF1P21675 1872 aa17.5■□□□□ 0.39
SGCA-209ENST00000513821 G3V3G9 751 aa17.5■□□□□ 0.39
SGCA-209ENST00000513821 CXCL9Q07325 125 aa17.5■□□□□ 0.39
SGCA-209ENST00000513821 DCAF8Q5TAQ9 597 aa17.5■□□□□ 0.39
SGCA-209ENST00000513821 CIAPIN1Q6FI81 312 aa17.5■□□□□ 0.39
SGCA-209ENST00000513821 SMC4Q9NTJ3 1288 aa17.5■□□□□ 0.39
SGCA-209ENST00000513821 XDHP47989 1333 aa17.49■□□□□ 0.39
SGCA-209ENST00000513821 ANKRD18BA2A2Z9 1011 aa17.49■□□□□ 0.39
SGCA-209ENST00000513821 RIMBP2O15034 1052 aa17.49■□□□□ 0.39
SGCA-209ENST00000513821 ITGA6P23229 1130 aa17.49■□□□□ 0.39
SGCA-209ENST00000513821 ATP2B4P23634 1241 aa17.49■□□□□ 0.39
SGCA-209ENST00000513821 EPHX2P34913 555 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms