RNA–Protein interactions for RNA: ENST00000513538.1

TCOF1-212, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 701 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-212ENST00000513538 KIAA2012Q0VF49 1180 aa12.7□□□□□ -0.38
TCOF1-212ENST00000513538 COPS6Q7L5N1 327 aa12.7□□□□□ -0.38
TCOF1-212ENST00000513538 TRPM4Q8TD43 1214 aa12.7□□□□□ -0.38
TCOF1-212ENST00000513538 XAGE3Q8WTP9 111 aa12.7□□□□□ -0.38
TCOF1-212ENST00000513538 TSKSQ9UJT2 592 aa12.7□□□□□ -0.38
TCOF1-212ENST00000513538 CASP8AP2Q9UKL3 1982 aa12.7□□□□□ -0.38
TCOF1-212ENST00000513538 POLR2AP24928 1970 aaKnown RBP12.69□□□□□ -0.38
TCOF1-212ENST00000513538 RAD17O75943 681 aa12.69□□□□□ -0.38
TCOF1-212ENST00000513538 ECE1P42892 770 aa12.69□□□□□ -0.38
TCOF1-212ENST00000513538 RIPK4P57078 832 aa12.69□□□□□ -0.38
TCOF1-212ENST00000513538 DLK2Q6UY11 383 aa12.69□□□□□ -0.38
TCOF1-212ENST00000513538 DPP8Q6V1X1 898 aaPredicted RBP12.69□□□□□ -0.38
TCOF1-212ENST00000513538 SP8Q8IXZ3 490 aa12.69□□□□□ -0.38
TCOF1-212ENST00000513538 MPNDQ8N594 471 aa12.69□□□□□ -0.38
TCOF1-212ENST00000513538 VPS33BQ9H267 617 aa12.69□□□□□ -0.38
TCOF1-212ENST00000513538 PGAP2Q9UHJ9 254 aa12.69□□□□□ -0.38
TCOF1-212ENST00000513538 CELF2O95319 508 aaKnown RBP12.68□□□□□ -0.38
TCOF1-212ENST00000513538 AIMP1Q12904 312 aaKnown RBP12.68□□□□□ -0.38
TCOF1-212ENST00000513538 TCIRG1Q13488 830 aa12.68□□□□□ -0.38
TCOF1-212ENST00000513538 GRAPQ13588 217 aa12.68□□□□□ -0.38
TCOF1-212ENST00000513538 CIAPIN1Q6FI81 312 aa12.68□□□□□ -0.38
TCOF1-212ENST00000513538 SAPCD2Q86UD0 394 aa12.68□□□□□ -0.38
TCOF1-212ENST00000513538 GRAPLQ8TC17 118 aaPredicted RBP12.68□□□□□ -0.38
TCOF1-212ENST00000513538 SCN9AQ15858 1988 aa12.68□□□□□ -0.38
TCOF1-212ENST00000513538 CDHR2Q9BYE9 1310 aa12.67□□□□□ -0.38
TCOF1-212ENST00000513538 BBOX1O75936 387 aa12.67□□□□□ -0.38
TCOF1-212ENST00000513538 TMPOP42166 694 aaKnown RBP12.67□□□□□ -0.38
TCOF1-212ENST00000513538 FAM161AQ3B820 660 aa12.67□□□□□ -0.38
TCOF1-212ENST00000513538 SUPT20HQ8NEM7 779 aa12.67□□□□□ -0.38
TCOF1-212ENST00000513538 ZIC5Q96T25 663 aa12.67□□□□□ -0.38
TCOF1-212ENST00000513538 BABAM1Q9NWV8 329 aa12.67□□□□□ -0.38
TCOF1-212ENST00000513538 SH3TC1Q8TE82 1336 aa12.66□□□□□ -0.38
TCOF1-212ENST00000513538 MAP2K2P36507 400 aa12.66□□□□□ -0.38
TCOF1-212ENST00000513538 HSP90AB3PQ58FF7 597 aa12.66□□□□□ -0.38
TCOF1-212ENST00000513538 PNNQ9H307 717 aaKnown RBP12.66□□□□□ -0.38
TCOF1-212ENST00000513538 CHPF2Q9P2E5 772 aa12.66□□□□□ -0.38
TCOF1-212ENST00000513538 TRMT112Q9UI30 125 aaKnown RBP12.66□□□□□ -0.38
TCOF1-212ENST00000513538 EGFRP00533 1210 aa12.65□□□□□ -0.38
TCOF1-212ENST00000513538 DDX46Q7L014 1031 aaKnown RBP12.65□□□□□ -0.38
TCOF1-212ENST00000513538 CCDC146Q8IYE0 955 aa12.65□□□□□ -0.38
TCOF1-212ENST00000513538 CELF1Q92879 486 aaKnown RBP12.65□□□□□ -0.38
TCOF1-212ENST00000513538 BCL2L13Q9BXK5 485 aa12.65□□□□□ -0.38
TCOF1-212ENST00000513538 TMX4Q9H1E5 349 aaPredicted RBP12.65□□□□□ -0.38
TCOF1-212ENST00000513538 ZNF408Q9H9D4 720 aa12.65□□□□□ -0.38
TCOF1-212ENST00000513538 ZBTB12Q9Y330 459 aaPredicted RBP12.65□□□□□ -0.38
TCOF1-212ENST00000513538 CHL1O00533 1208 aa12.64□□□□□ -0.39
TCOF1-212ENST00000513538 SAMD7Q7Z3H4 446 aa12.64□□□□□ -0.39
TCOF1-212ENST00000513538 MICALL2Q8IY33 904 aa12.64□□□□□ -0.39
TCOF1-212ENST00000513538 ZC3H15Q8WU90 426 aaKnown RBP12.64□□□□□ -0.39
TCOF1-212ENST00000513538 HHIPL1Q96JK4 782 aa12.64□□□□□ -0.39
TCOF1-212ENST00000513538 ISCA1Q9BUE6 129 aa12.64□□□□□ -0.39
TCOF1-212ENST00000513538 BEGAINQ9BUH8 593 aa12.64□□□□□ -0.39
TCOF1-212ENST00000513538 DBNDD1Q9H9R9 158 aa12.64□□□□□ -0.39
TCOF1-212ENST00000513538 CNOT7Q9UIV1 285 aaKnown RBP12.64□□□□□ -0.39
TCOF1-212ENST00000513538 TRIM35Q9UPQ4 493 aa12.64□□□□□ -0.39
TCOF1-212ENST00000513538 RTL9Q8NET4 1388 aa12.64□□□□□ -0.39
TCOF1-212ENST00000513538 CCDC85CA6NKD9 419 aa12.63□□□□□ -0.39
TCOF1-212ENST00000513538 PSMD14O00487 310 aa12.63□□□□□ -0.39
TCOF1-212ENST00000513538 TNIP1Q15025 636 aa12.63□□□□□ -0.39
TCOF1-212ENST00000513538 NEUROD2Q15784 382 aa12.63□□□□□ -0.39
TCOF1-212ENST00000513538 USP48Q86UV5 1035 aa12.63□□□□□ -0.39
TCOF1-212ENST00000513538 FAM89AQ96GI7 184 aa12.63□□□□□ -0.39
TCOF1-212ENST00000513538 KCNQ5Q9NR82 932 aa12.63□□□□□ -0.39
TCOF1-212ENST00000513538 POLLQ9UGP5 575 aa12.63□□□□□ -0.39
TCOF1-212ENST00000513538 PSME4Q14997 1843 aa12.62□□□□□ -0.39
TCOF1-212ENST00000513538 ATP5J2-PTCD1G3V325 749 aa12.62□□□□□ -0.39
TCOF1-212ENST00000513538 RIMBP2O15034 1052 aa12.62□□□□□ -0.39
TCOF1-212ENST00000513538 BRPF1P55201 1214 aaPredicted RBP12.62□□□□□ -0.39
TCOF1-212ENST00000513538 GPSM2P81274 684 aa12.62□□□□□ -0.39
TCOF1-212ENST00000513538 LMOD3Q0VAK6 560 aa12.62□□□□□ -0.39
TCOF1-212ENST00000513538 SF3B3Q15393 1217 aaKnown RBP12.62□□□□□ -0.39
TCOF1-212ENST00000513538 CDC37L1Q7L3B6 337 aa12.62□□□□□ -0.39
TCOF1-212ENST00000513538 PLBD2Q8NHP8 589 aa12.62□□□□□ -0.39
TCOF1-212ENST00000513538 MCOLN1Q9GZU1 580 aa12.62□□□□□ -0.39
TCOF1-212ENST00000513538 FAM155AB1AL88 458 aaPredicted RBP12.61□□□□□ -0.39
TCOF1-212ENST00000513538 RGS19P49795 217 aa12.61□□□□□ -0.39
TCOF1-212ENST00000513538 HDGFL1Q5TGJ6 251 aa12.61□□□□□ -0.39
TCOF1-212ENST00000513538 TMC4Q7Z404 712 aa12.61□□□□□ -0.39
TCOF1-212ENST00000513538 DPF2Q92785 391 aa12.61□□□□□ -0.39
TCOF1-212ENST00000513538 NSFL1CQ9UNZ2 370 aaKnown RBP12.61□□□□□ -0.39
TCOF1-212ENST00000513538 ASTN2O75129 1339 aaPredicted RBP12.61□□□□□ -0.39
TCOF1-212ENST00000513538 ADM5C9JUS6 153 aa12.6□□□□□ -0.39
TCOF1-212ENST00000513538 H7C1D1 291 aa12.6□□□□□ -0.39
TCOF1-212ENST00000513538 ECE2O60344 883 aa12.6□□□□□ -0.39
TCOF1-212ENST00000513538 SLC34A2O95436 690 aa12.6□□□□□ -0.39
TCOF1-212ENST00000513538 HUNKP57058 714 aa12.6□□□□□ -0.39
TCOF1-212ENST00000513538 RALBP1Q15311 655 aa12.6□□□□□ -0.39
TCOF1-212ENST00000513538 DOK7Q18PE1 504 aa12.6□□□□□ -0.39
TCOF1-212ENST00000513538 WASHC4Q2M389 1173 aa12.6□□□□□ -0.39
TCOF1-212ENST00000513538 TBC1D10BQ4KMP7 808 aaPredicted RBP12.6□□□□□ -0.39
TCOF1-212ENST00000513538 RTL5Q5HYW3 569 aaPredicted RBP12.6□□□□□ -0.39
TCOF1-212ENST00000513538 ANKRD13DQ6ZTN6 518 aa12.6□□□□□ -0.39
TCOF1-212ENST00000513538 LAS1LQ9Y4W2 734 aaKnown RBP12.6□□□□□ -0.39
TCOF1-212ENST00000513538 ZNF646O15015 1829 aaPredicted RBP12.6□□□□□ -0.39
TCOF1-212ENST00000513538 C6orf229H3BNL8 230 aa12.59□□□□□ -0.39
TCOF1-212ENST00000513538 CA12O43570 354 aa12.59□□□□□ -0.39
TCOF1-212ENST00000513538 KRT26Q7Z3Y9 468 aa12.59□□□□□ -0.39
TCOF1-212ENST00000513538 AKAP11Q9UKA4 1901 aa12.58□□□□□ -0.39
TCOF1-212ENST00000513538 IRS4O14654 1257 aaPredicted RBP12.58□□□□□ -0.4
TCOF1-212ENST00000513538 HOXB7P09629 217 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms