RNA–Protein interactions for RNA: ENST00000513448.5

PROM1-215, Transcript of prominin 1, humanhuman

TSL 1 (best)

Gene PROM1, Length 2,042 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1-215ENST00000513448 KLHDC4Q8TBB5 520 aa11.14□□□□□ -0.63
PROM1-215ENST00000513448 KCPQ6ZWJ8 1503 aa11.13□□□□□ -0.63
PROM1-215ENST00000513448 A0A0D9SFI3 127 aa11.13□□□□□ -0.63
PROM1-215ENST00000513448 TAF5LO75529 589 aa11.13□□□□□ -0.63
PROM1-215ENST00000513448 F13A1P00488 732 aa11.13□□□□□ -0.63
PROM1-215ENST00000513448 PRIM1P49642 420 aaKnown RBP11.13□□□□□ -0.63
PROM1-215ENST00000513448 LMBR1LQ6UX01 489 aa11.13□□□□□ -0.63
PROM1-215ENST00000513448 VSIG10Q8N0Z9 540 aa11.13□□□□□ -0.63
PROM1-215ENST00000513448 ATP5J2-PTCD1G3V325 749 aa11.13□□□□□ -0.63
PROM1-215ENST00000513448 PTCD1O75127 700 aaKnown RBP11.13□□□□□ -0.63
PROM1-215ENST00000513448 CIAO1O76071 339 aa11.13□□□□□ -0.63
PROM1-215ENST00000513448 TRIM28Q13263 835 aaKnown RBP11.13□□□□□ -0.63
PROM1-215ENST00000513448 USP48Q86UV5 1035 aa11.13□□□□□ -0.63
PROM1-215ENST00000513448 FAM184AQ8NB25 1140 aa11.13□□□□□ -0.63
PROM1-215ENST00000513448 U3KPZ7 1027 aaPredicted RBP11.13□□□□□ -0.63
PROM1-215ENST00000513448 RPS6KB1P23443 525 aa11.12□□□□□ -0.63
PROM1-215ENST00000513448 UBE2HP62256 183 aa11.12□□□□□ -0.63
PROM1-215ENST00000513448 MCMDC2Q4G0Z9 681 aa11.12□□□□□ -0.63
PROM1-215ENST00000513448 FOXD4L5Q5VV16 416 aaPredicted RBP11.12□□□□□ -0.63
PROM1-215ENST00000513448 KBTBD3Q8NAB2 608 aa11.12□□□□□ -0.63
PROM1-215ENST00000513448 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.12□□□□□ -0.63
PROM1-215ENST00000513448 FOXD4L4Q8WXT5 416 aaPredicted RBP11.12□□□□□ -0.63
PROM1-215ENST00000513448 PDLIM2Q96JY6 352 aa11.12□□□□□ -0.63
PROM1-215ENST00000513448 NUP188Q5SRE5 1749 aa11.12□□□□□ -0.63
PROM1-215ENST00000513448 GJB2P29033 226 aa11.11□□□□□ -0.63
PROM1-215ENST00000513448 ME3Q16798 604 aa11.11□□□□□ -0.63
PROM1-215ENST00000513448 CCDC83Q8IWF9 413 aa11.11□□□□□ -0.63
PROM1-215ENST00000513448 RBSNQ9H1K0 784 aa11.11□□□□□ -0.63
PROM1-215ENST00000513448 HELLSQ9NRZ9 838 aa11.11□□□□□ -0.63
PROM1-215ENST00000513448 SH3TC1Q8TE82 1336 aa11.11□□□□□ -0.63
PROM1-215ENST00000513448 PALLDQ8WX93 1383 aa11.11□□□□□ -0.63
PROM1-215ENST00000513448 SYCE3A1L190 88 aa11.11□□□□□ -0.63
PROM1-215ENST00000513448 HMGB1P09429 215 aaKnown RBP11.11□□□□□ -0.63
PROM1-215ENST00000513448 LRRFIP1Q32MZ4 808 aaKnown RBP11.11□□□□□ -0.63
PROM1-215ENST00000513448 RBM27Q9P2N5 1060 aaKnown RBP11.11□□□□□ -0.63
PROM1-215ENST00000513448 EYA2O00167 538 aa11.1□□□□□ -0.63
PROM1-215ENST00000513448 PIP4K2AP48426 406 aaPredicted RBP11.1□□□□□ -0.63
PROM1-215ENST00000513448 HSPA2P54652 639 aa11.1□□□□□ -0.63
PROM1-215ENST00000513448 EVA1CP58658 441 aa11.1□□□□□ -0.63
PROM1-215ENST00000513448 TTLL7Q6ZT98 887 aa11.1□□□□□ -0.63
PROM1-215ENST00000513448 ATG9AQ7Z3C6 839 aa11.1□□□□□ -0.63
PROM1-215ENST00000513448 CHMP4CQ96CF2 233 aa11.1□□□□□ -0.63
PROM1-215ENST00000513448 DBNDD2Q9BQY9 259 aa11.1□□□□□ -0.63
PROM1-215ENST00000513448 ISCA1Q9BUE6 129 aa11.1□□□□□ -0.63
PROM1-215ENST00000513448 DNAJC5Q9H3Z4 198 aa11.1□□□□□ -0.63
PROM1-215ENST00000513448 NSFL1CQ9UNZ2 370 aaKnown RBP11.1□□□□□ -0.63
PROM1-215ENST00000513448 MTMR6Q9Y217 621 aa11.1□□□□□ -0.63
PROM1-215ENST00000513448 SPEF2Q9C093 1822 aa11.1□□□□□ -0.63
PROM1-215ENST00000513448 LARGE1O95461 756 aa11.09□□□□□ -0.63
PROM1-215ENST00000513448 CPA1P15085 419 aa11.09□□□□□ -0.63
PROM1-215ENST00000513448 UVSSAQ2YD98 709 aa11.09□□□□□ -0.63
PROM1-215ENST00000513448 CCDC183Q5T5S1 534 aa11.09□□□□□ -0.63
PROM1-215ENST00000513448 ZNF589Q86UQ0 364 aaPredicted RBP11.09□□□□□ -0.63
PROM1-215ENST00000513448 ZSCAN30Q86W11 494 aa11.09□□□□□ -0.63
PROM1-215ENST00000513448 PLA2G12BQ9BX93 195 aa11.09□□□□□ -0.63
PROM1-215ENST00000513448 TSPY26PQ9H489 355 aa11.09□□□□□ -0.63
PROM1-215ENST00000513448 TPCN1Q9ULQ1 816 aa11.09□□□□□ -0.63
PROM1-215ENST00000513448 ABCA3Q99758 1704 aa11.09□□□□□ -0.63
PROM1-215ENST00000513448 A1BGP04217 495 aa11.09□□□□□ -0.63
PROM1-215ENST00000513448 TCIRG1Q13488 830 aa11.09□□□□□ -0.63
PROM1-215ENST00000513448 LARP1BQ659C4 914 aaKnown RBP11.09□□□□□ -0.63
PROM1-215ENST00000513448 NEK1Q96PY6 1258 aa11.09□□□□□ -0.63
PROM1-215ENST00000513448 DSCC1Q9BVC3 393 aa11.09□□□□□ -0.63
PROM1-215ENST00000513448 TMOD3Q9NYL9 352 aa11.09□□□□□ -0.63
PROM1-215ENST00000513448 AKAP2Q9Y2D5 859 aa11.09□□□□□ -0.63
PROM1-215ENST00000513448 SHANK3Q9BYB0 1731 aa11.09□□□□□ -0.63
PROM1-215ENST00000513448 DDX54Q8TDD1 881 aaKnown RBP11.08□□□□□ -0.64
PROM1-215ENST00000513448 CHAMP1Q96JM3 812 aa11.08□□□□□ -0.64
PROM1-215ENST00000513448 STRCQ7RTU9 1775 aa11.08□□□□□ -0.64
PROM1-215ENST00000513448 TJP1Q07157 1748 aa11.08□□□□□ -0.64
PROM1-215ENST00000513448 ABCC12Q96J65 1359 aa11.08□□□□□ -0.64
PROM1-215ENST00000513448 ELP1O95163 1332 aa11.08□□□□□ -0.64
PROM1-215ENST00000513448 GADD45BO75293 160 aaPredicted RBP11.08□□□□□ -0.64
PROM1-215ENST00000513448 STARD3NLO95772 234 aa11.08□□□□□ -0.64
PROM1-215ENST00000513448 MCM5P33992 734 aa11.08□□□□□ -0.64
PROM1-215ENST00000513448 ST3GAL1Q11201 340 aa11.08□□□□□ -0.64
PROM1-215ENST00000513448 TOB2Q14106 344 aaPredicted RBP11.08□□□□□ -0.64
PROM1-215ENST00000513448 JARID2Q92833 1246 aaPredicted RBP11.08□□□□□ -0.64
PROM1-215ENST00000513448 DNAJC2Q99543 621 aaKnown RBP11.08□□□□□ -0.64
PROM1-215ENST00000513448 PAG1Q9NWQ8 432 aa11.08□□□□□ -0.64
PROM1-215ENST00000513448 CNPY2Q9Y2B0 182 aa11.08□□□□□ -0.64
PROM1-215ENST00000513448 CHMP3Q9Y3E7 222 aa11.08□□□□□ -0.64
PROM1-215ENST00000513448 NHSL1Q5SYE7 1610 aa11.07□□□□□ -0.64
PROM1-215ENST00000513448 ZNF609O15014 1411 aa11.07□□□□□ -0.64
PROM1-215ENST00000513448 PCCAP05165 728 aaPredicted RBP11.07□□□□□ -0.64
PROM1-215ENST00000513448 CCDC57Q2TAC2 916 aa11.07□□□□□ -0.64
PROM1-215ENST00000513448 HSP90AB3PQ58FF7 597 aa11.07□□□□□ -0.64
PROM1-215ENST00000513448 NEUROD6Q96NK8 337 aa11.07□□□□□ -0.64
PROM1-215ENST00000513448 CEP126Q9P2H0 1117 aa11.07□□□□□ -0.64
PROM1-215ENST00000513448 TCHHQ07283 1943 aa11.07□□□□□ -0.64
PROM1-215ENST00000513448 KRT85P78386 507 aa11.06□□□□□ -0.64
PROM1-215ENST00000513448 ZMYM1Q5SVZ6 1142 aa11.06□□□□□ -0.64
PROM1-215ENST00000513448 KIF6Q6ZMV9 814 aa11.06□□□□□ -0.64
PROM1-215ENST00000513448 LARP6Q9BRS8 491 aaKnown RBP11.06□□□□□ -0.64
PROM1-215ENST00000513448 LLPHQ9BRT6 129 aaKnown RBP11.06□□□□□ -0.64
PROM1-215ENST00000513448 SCAND2PQ9GZW5 306 aaPredicted RBP11.06□□□□□ -0.64
PROM1-215ENST00000513448 ZBTB3Q9H5J0 574 aa11.06□□□□□ -0.64
PROM1-215ENST00000513448 CSF1RP07333 972 aa11.06□□□□□ -0.64
PROM1-215ENST00000513448 ZFYP08048 801 aaPredicted RBP11.06□□□□□ -0.64
PROM1-215ENST00000513448 MSNP26038 577 aaKnown RBP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms