RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 SLC4A4Q9Y6R1 1079 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 CCDC172P0C7W6 258 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 WTAPQ15007 396 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 LINS1Q8NG48 757 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 TSPY26PQ9H489 355 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 STX8Q9UNK0 236 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 BCS1LQ9Y276 419 aa4.91□□□□□ -1.62
VCAN-209ENST00000513016 GRM8O00222 908 aa4.9□□□□□ -1.62
VCAN-209ENST00000513016 NOP2P46087 812 aaKnown RBP4.9□□□□□ -1.62
VCAN-209ENST00000513016 PNMA2Q9UL42 364 aa4.9□□□□□ -1.62
VCAN-209ENST00000513016 UFL1O94874 794 aa4.9□□□□□ -1.62
VCAN-209ENST00000513016 KANK3Q6NY19 840 aa4.9□□□□□ -1.62
VCAN-209ENST00000513016 WDR66Q8TBY9 1149 aa4.9□□□□□ -1.62
VCAN-209ENST00000513016 GTPBP4Q9BZE4 634 aaKnown RBP4.9□□□□□ -1.62
VCAN-209ENST00000513016 HOMER2Q9NSB8 354 aa4.9□□□□□ -1.62
VCAN-209ENST00000513016 SSX2IPQ9Y2D8 614 aa4.9□□□□□ -1.62
VCAN-209ENST00000513016 SH3TC1Q8TE82 1336 aa4.9□□□□□ -1.62
VCAN-209ENST00000513016 RNMTO43148 476 aaKnown RBP4.9□□□□□ -1.62
VCAN-209ENST00000513016 FAM114A1Q8IWE2 563 aa4.9□□□□□ -1.62
VCAN-209ENST00000513016 TBC1D22AQ8WUA7 517 aa4.9□□□□□ -1.62
VCAN-209ENST00000513016 NPATQ14207 1427 aa4.9□□□□□ -1.62
VCAN-209ENST00000513016 ZBED4O75132 1171 aa4.9□□□□□ -1.63
VCAN-209ENST00000513016 IFIT1BQ5T764 474 aaKnown RBP4.9□□□□□ -1.63
VCAN-209ENST00000513016 DCAF15Q66K64 600 aa4.9□□□□□ -1.63
VCAN-209ENST00000513016 LMBR1LQ6UX01 489 aa4.9□□□□□ -1.63
VCAN-209ENST00000513016 SPDYE3A6NKU9 549 aa4.9□□□□□ -1.63
VCAN-209ENST00000513016 CASTP20810 708 aaKnown RBP4.9□□□□□ -1.63
VCAN-209ENST00000513016 UBA7P41226 1012 aa4.9□□□□□ -1.63
VCAN-209ENST00000513016 CACNA2D4Q7Z3S7 1137 aa4.9□□□□□ -1.63
VCAN-209ENST00000513016 VSIG10Q8N0Z9 540 aa4.9□□□□□ -1.63
VCAN-209ENST00000513016 GLT8D2Q9H1C3 349 aa4.9□□□□□ -1.63
VCAN-209ENST00000513016 PLEKHH1Q9ULM0 1364 aa4.9□□□□□ -1.63
VCAN-209ENST00000513016 K7ELQ4 463 aaPredicted RBP4.9□□□□□ -1.63
VCAN-209ENST00000513016 DLGAP5Q15398 846 aa4.9□□□□□ -1.63
VCAN-209ENST00000513016 EAPPQ56P03 285 aaPredicted RBP4.9□□□□□ -1.63
VCAN-209ENST00000513016 PRPF40BQ6NWY9 871 aaKnown RBP4.9□□□□□ -1.63
VCAN-209ENST00000513016 NFATC2IPQ8NCF5 419 aa4.9□□□□□ -1.63
VCAN-209ENST00000513016 ARHGAP45Q92619 1136 aa4.9□□□□□ -1.63
VCAN-209ENST00000513016 DCPSQ96C86 337 aaKnown RBP4.9□□□□□ -1.63
VCAN-209ENST00000513016 MAP3K5Q99683 1374 aa4.9□□□□□ -1.63
VCAN-209ENST00000513016 GOLGA6L10A6NI86 522 aa4.9□□□□□ -1.63
VCAN-209ENST00000513016 F6X3S4 739 aa4.9□□□□□ -1.63
VCAN-209ENST00000513016 PDE8AO60658 829 aa4.9□□□□□ -1.63
VCAN-209ENST00000513016 HIBADHP31937 336 aaKnown RBP4.9□□□□□ -1.63
VCAN-209ENST00000513016 SLC39A6Q13433 755 aa4.9□□□□□ -1.63
VCAN-209ENST00000513016 TTLL5Q6EMB2 1281 aa4.9□□□□□ -1.63
VCAN-209ENST00000513016 CCDC112Q8NEF3 446 aa4.9□□□□□ -1.63
VCAN-209ENST00000513016 CALML3P27482 149 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 HOXC9P31274 260 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 MCM5P33992 734 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 CCDC82Q8N4S0 544 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 SNRKQ9NRH2 765 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 RTL9Q8NET4 1388 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 HACE1Q8IYU2 909 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 RRP36Q96EU6 259 aaKnown RBP4.89□□□□□ -1.63
VCAN-209ENST00000513016 IMPG2Q9BZV3 1241 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 USP16Q9Y5T5 823 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 PIK3C2GO75747 1445 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 UGGT2Q9NYU1 1516 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 SPA17Q15506 151 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 MPNDQ8N594 471 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 PHACTR2O75167 634 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 KRT13P13646 458 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 DEKP35659 375 aaKnown RBP4.89□□□□□ -1.63
VCAN-209ENST00000513016 METAP2P50579 478 aaKnown RBP eCLIP4.89□□□□□ -1.63
VCAN-209ENST00000513016 SSH1Q8WYL5 1049 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 TRAPPC8Q9Y2L5 1435 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 M0QZ92 97 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 IRX3P78415 501 aaPredicted RBP4.89□□□□□ -1.63
VCAN-209ENST00000513016 EIF4A2Q14240 407 aaKnown RBP4.89□□□□□ -1.63
VCAN-209ENST00000513016 GRIPAP1Q4V328 841 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 CIZ1Q9ULV3 898 aaPredicted RBP4.89□□□□□ -1.63
VCAN-209ENST00000513016 STK24Q9Y6E0 443 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 ZFYVE9O95405 1425 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 FANCIQ9NVI1 1328 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 ITSN2Q9NZM3 1697 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 ERVV-2B6SEH9 535 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 PPIP5K2O43314 1243 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 PRIM1P49642 420 aaKnown RBP4.89□□□□□ -1.63
VCAN-209ENST00000513016 TMC4Q7Z404 712 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 TEX11Q8IYF3 940 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 MSANTD4Q8NCY6 345 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 SCAND2PQ9GZW5 306 aaPredicted RBP4.89□□□□□ -1.63
VCAN-209ENST00000513016 DDX21Q9NR30 783 aaKnown RBP eCLIP4.89□□□□□ -1.63
VCAN-209ENST00000513016 CHPF2Q9P2E5 772 aa4.89□□□□□ -1.63
VCAN-209ENST00000513016 CTAGE5O15320 804 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 KIAA1328Q86T90 577 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 SULF1Q8IWU6 871 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 KRT27Q7Z3Y8 459 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 PLBD2Q8NHP8 589 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 DDX11Q96FC9 970 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 TCHPQ9BT92 498 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 UPF3BQ9BZI7 483 aaKnown RBP4.88□□□□□ -1.63
VCAN-209ENST00000513016 NUP62CLQ9H1M0 184 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 HOXB7P09629 217 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 ATP2B4P23634 1241 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 CCDC40Q4G0X9 1142 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 RMND1Q9NWS8 449 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 RALGAPBQ86X10 1494 aa4.88□□□□□ -1.63
VCAN-209ENST00000513016 RARSP54136 660 aaKnown RBP4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms