RNA–Protein interactions for RNA: ENST00000512234.1

SQSTM1-214, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 1,722 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-214ENST00000512234 USP44Q9H0E7 712 aa19.42■□□□□ 0.7
SQSTM1-214ENST00000512234 RIC1Q4ADV7 1423 aa19.42■□□□□ 0.7
SQSTM1-214ENST00000512234 CDHR2Q9BYE9 1310 aa19.41■□□□□ 0.7
SQSTM1-214ENST00000512234 SF3B3Q15393 1217 aaKnown RBP19.41■□□□□ 0.7
SQSTM1-214ENST00000512234 ZKSCAN2Q63HK3 967 aa19.41■□□□□ 0.7
SQSTM1-214ENST00000512234 C7orf43Q8WVR3 580 aa19.41■□□□□ 0.7
SQSTM1-214ENST00000512234 KAZALD1Q96I82 304 aa19.41■□□□□ 0.7
SQSTM1-214ENST00000512234 GREM2Q9H772 168 aa19.41■□□□□ 0.7
SQSTM1-214ENST00000512234 PRELPP51888 382 aa19.4■□□□□ 0.7
SQSTM1-214ENST00000512234 CTSWP56202 376 aa19.4■□□□□ 0.7
SQSTM1-214ENST00000512234 FOXO4P98177 505 aa19.4■□□□□ 0.7
SQSTM1-214ENST00000512234 DDX46Q7L014 1031 aaKnown RBP19.4■□□□□ 0.7
SQSTM1-214ENST00000512234 TMEM57Q8N5G2 664 aa19.4■□□□□ 0.7
SQSTM1-214ENST00000512234 TTLL11Q8NHH1 800 aa19.4■□□□□ 0.7
SQSTM1-214ENST00000512234 PANK1Q8TE04 598 aa19.4■□□□□ 0.7
SQSTM1-214ENST00000512234 PDZRN3Q9UPQ7 1066 aa19.4■□□□□ 0.7
SQSTM1-214ENST00000512234 ARHGAP45Q92619 1136 aa19.39■□□□□ 0.7
SQSTM1-214ENST00000512234 CRAMP1Q96RY5 1269 aa19.39■□□□□ 0.7
SQSTM1-214ENST00000512234 IPO8O15397 1037 aaKnown RBP19.39■□□□□ 0.69
SQSTM1-214ENST00000512234 GRIN3BO60391 1043 aa19.39■□□□□ 0.69
SQSTM1-214ENST00000512234 ALDH1B1P30837 517 aa19.39■□□□□ 0.69
SQSTM1-214ENST00000512234 PPEF1O14829 653 aaPredicted RBP19.38■□□□□ 0.69
SQSTM1-214ENST00000512234 FAM161AQ3B820 660 aa19.38■□□□□ 0.69
SQSTM1-214ENST00000512234 MEIS3Q99687 375 aa19.38■□□□□ 0.69
SQSTM1-214ENST00000512234 CHMP3Q9Y3E7 222 aa19.38■□□□□ 0.69
SQSTM1-214ENST00000512234 NFKBIEO00221 500 aa19.37■□□□□ 0.69
SQSTM1-214ENST00000512234 CCT4P50991 539 aaKnown RBP19.37■□□□□ 0.69
SQSTM1-214ENST00000512234 C20orf194Q5TEA3 1177 aa19.37■□□□□ 0.69
SQSTM1-214ENST00000512234 LMBR1LQ6UX01 489 aa19.37■□□□□ 0.69
SQSTM1-214ENST00000512234 GRAPQ13588 217 aa19.37■□□□□ 0.69
SQSTM1-214ENST00000512234 GRAPLQ8TC17 118 aaPredicted RBP19.37■□□□□ 0.69
SQSTM1-214ENST00000512234 CCDC152Q4G0S7 254 aa19.36■□□□□ 0.69
SQSTM1-214ENST00000512234 INTS3Q68E01 1043 aaKnown RBP19.36■□□□□ 0.69
SQSTM1-214ENST00000512234 BICC1Q9H694 974 aaKnown RBP19.36■□□□□ 0.69
SQSTM1-214ENST00000512234 DZIP1LQ8IYY4 767 aaKnown RBP19.35■□□□□ 0.69
SQSTM1-214ENST00000512234 ZNF594Q96JF6 807 aaPredicted RBP19.35■□□□□ 0.69
SQSTM1-214ENST00000512234 PLA2G12BQ9BX93 195 aa19.35■□□□□ 0.69
SQSTM1-214ENST00000512234 ARFGEF1Q9Y6D6 1849 aa19.35■□□□□ 0.69
SQSTM1-214ENST00000512234 UTYO14607 1347 aa19.35■□□□□ 0.69
SQSTM1-214ENST00000512234 WTIPA6NIX2 430 aaPredicted RBP19.34■□□□□ 0.69
SQSTM1-214ENST00000512234 CSF1RP07333 972 aa19.34■□□□□ 0.69
SQSTM1-214ENST00000512234 ITGA6P23229 1130 aa19.34■□□□□ 0.69
SQSTM1-214ENST00000512234 RPS8P62241 208 aaKnown RBP19.34■□□□□ 0.69
SQSTM1-214ENST00000512234 FTSJ3Q8IY81 847 aaKnown RBP19.34■□□□□ 0.69
SQSTM1-214ENST00000512234 ANKRD44Q8N8A2 993 aa19.34■□□□□ 0.69
SQSTM1-214ENST00000512234 ZNF277Q9NRM2 450 aaPredicted RBP19.33■□□□□ 0.68
SQSTM1-214ENST00000512234 LRRFIP2Q9Y608 721 aaKnown RBP19.33■□□□□ 0.68
SQSTM1-214ENST00000512234 CCDC93Q567U6 631 aa19.32■□□□□ 0.68
SQSTM1-214ENST00000512234 ITPRIPQ8IWB1 547 aa19.32■□□□□ 0.68
SQSTM1-214ENST00000512234 GPR101Q96P66 508 aaPredicted RBP19.32■□□□□ 0.68
SQSTM1-214ENST00000512234 ATP6V0A2Q9Y487 856 aa19.32■□□□□ 0.68
SQSTM1-214ENST00000512234 BBOX1O75936 387 aa19.31■□□□□ 0.68
SQSTM1-214ENST00000512234 UBTFL1P0CB47 393 aaPredicted RBP19.31■□□□□ 0.68
SQSTM1-214ENST00000512234 HSP90B1P14625 803 aaKnown RBP19.31■□□□□ 0.68
SQSTM1-214ENST00000512234 C9orf131Q5VYM1 1079 aa19.31■□□□□ 0.68
SQSTM1-214ENST00000512234 KLHDC4Q8TBB5 520 aa19.31■□□□□ 0.68
SQSTM1-214ENST00000512234 C1orf115Q9H7X2 142 aa19.31■□□□□ 0.68
SQSTM1-214ENST00000512234 COG6Q9Y2V7 657 aa19.31■□□□□ 0.68
SQSTM1-214ENST00000512234 GPSM2P81274 684 aa19.3■□□□□ 0.68
SQSTM1-214ENST00000512234 ANKRD18AQ8IVF6 992 aa19.3■□□□□ 0.68
SQSTM1-214ENST00000512234 SP8Q8IXZ3 490 aa19.3■□□□□ 0.68
SQSTM1-214ENST00000512234 RNF181Q9P0P0 153 aa19.3■□□□□ 0.68
SQSTM1-214ENST00000512234 MYH3P11055 1940 aa19.29■□□□□ 0.68
SQSTM1-214ENST00000512234 TAOK3Q9H2K8 898 aa19.29■□□□□ 0.68
SQSTM1-214ENST00000512234 NSFL1CQ9UNZ2 370 aaKnown RBP19.29■□□□□ 0.68
SQSTM1-214ENST00000512234 SNED1Q8TER0 1413 aa19.29■□□□□ 0.68
SQSTM1-214ENST00000512234 PUS3Q9BZE2 481 aaKnown RBP19.28■□□□□ 0.68
SQSTM1-214ENST00000512234 ANKRD18BA2A2Z9 1011 aa19.28■□□□□ 0.68
SQSTM1-214ENST00000512234 SNAP23O00161 211 aa19.28■□□□□ 0.68
SQSTM1-214ENST00000512234 IFIT5Q13325 482 aaKnown RBP19.28■□□□□ 0.68
SQSTM1-214ENST00000512234 HELBQ8NG08 1087 aaPredicted RBP19.28■□□□□ 0.68
SQSTM1-214ENST00000512234 SPEF2Q9C093 1822 aa19.28■□□□□ 0.68
SQSTM1-214ENST00000512234 YY1P25490 414 aa19.27■□□□□ 0.68
SQSTM1-214ENST00000512234 FKBP4Q02790 459 aaKnown RBP eCLIP19.27■□□□□ 0.68
SQSTM1-214ENST00000512234 MPNDQ8N594 471 aa19.27■□□□□ 0.68
SQSTM1-214ENST00000512234 CDC5LQ99459 802 aaKnown RBP19.27■□□□□ 0.68
SQSTM1-214ENST00000512234 FER1L6Q2WGJ9 1857 aa19.27■□□□□ 0.67
SQSTM1-214ENST00000512234 ZBTB7BO15156 539 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-214ENST00000512234 CCDC57Q2TAC2 916 aa19.26■□□□□ 0.67
SQSTM1-214ENST00000512234 RABL6Q3YEC7 729 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-214ENST00000512234 DPP8Q6V1X1 898 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-214ENST00000512234 RTKN2Q8IZC4 609 aa19.26■□□□□ 0.67
SQSTM1-214ENST00000512234 ZNF526Q8TF50 670 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-214ENST00000512234 POLLQ9UGP5 575 aa19.26■□□□□ 0.67
SQSTM1-214ENST00000512234 MINPP1Q9UNW1 487 aa19.26■□□□□ 0.67
SQSTM1-214ENST00000512234 RTL9Q8NET4 1388 aa19.25■□□□□ 0.67
SQSTM1-214ENST00000512234 RIMBP2O15034 1052 aa19.25■□□□□ 0.67
SQSTM1-214ENST00000512234 TAF5LO75529 589 aa19.25■□□□□ 0.67
SQSTM1-214ENST00000512234 LMNB1P20700 586 aa19.25■□□□□ 0.67
SQSTM1-214ENST00000512234 IGHMBP2P38935 993 aaKnown RBP19.25■□□□□ 0.67
SQSTM1-214ENST00000512234 AOC3Q16853 763 aa19.25■□□□□ 0.67
SQSTM1-214ENST00000512234 SOGA3Q5TF21 947 aa19.25■□□□□ 0.67
SQSTM1-214ENST00000512234 ANKIB1Q9P2G1 1089 aa19.25■□□□□ 0.67
SQSTM1-214ENST00000512234 COL4A5P29400 1685 aa19.24■□□□□ 0.67
SQSTM1-214ENST00000512234 LRRC24Q50LG9 513 aa19.24■□□□□ 0.67
SQSTM1-214ENST00000512234 TAF7LQ5H9L4 462 aa19.24■□□□□ 0.67
SQSTM1-214ENST00000512234 MPHOSPH8Q99549 860 aa19.24■□□□□ 0.67
SQSTM1-214ENST00000512234 TMX4Q9H1E5 349 aaPredicted RBP19.24■□□□□ 0.67
SQSTM1-214ENST00000512234 BSDC1Q9NW68 430 aaPredicted RBP19.24■□□□□ 0.67
SQSTM1-214ENST00000512234 PA2G4Q9UQ80 394 aaKnown RBP19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms