RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 TMX4Q9H1E5 349 aaPredicted RBP23.1■■□□□ 1.29
TPM3-220ENST00000509601 SPINK5Q9NQ38 1064 aaPredicted RBP23.1■■□□□ 1.29
TPM3-220ENST00000509601 MAP3K2Q9Y2U5 619 aa23.1■■□□□ 1.29
TPM3-220ENST00000509601 DDX60Q8IY21 1712 aaKnown RBP23.09■■□□□ 1.29
TPM3-220ENST00000509601 IQCA1LA6NCM1 817 aa23.09■■□□□ 1.29
TPM3-220ENST00000509601 DDX58O95786 925 aaKnown RBP23.09■■□□□ 1.29
TPM3-220ENST00000509601 GPC2Q8N158 579 aa23.09■■□□□ 1.29
TPM3-220ENST00000509601 MPNDQ8N594 471 aa23.09■■□□□ 1.29
TPM3-220ENST00000509601 VPS33BQ9H267 617 aa23.09■■□□□ 1.29
TPM3-220ENST00000509601 FANCIQ9NVI1 1328 aa23.08■■□□□ 1.29
TPM3-220ENST00000509601 PI4KAP2A4QPH2 592 aa23.08■■□□□ 1.29
TPM3-220ENST00000509601 VAMP4O75379 141 aa23.08■■□□□ 1.29
TPM3-220ENST00000509601 SLC4A2P04920 1241 aa23.08■■□□□ 1.29
TPM3-220ENST00000509601 CHADLQ6NUI6 762 aa23.08■■□□□ 1.29
TPM3-220ENST00000509601 PI4KAP1Q8N8J0 262 aa23.08■■□□□ 1.29
TPM3-220ENST00000509601 JARID2Q92833 1246 aaPredicted RBP23.08■■□□□ 1.29
TPM3-220ENST00000509601 PPIP5K2O43314 1243 aa23.07■■□□□ 1.28
TPM3-220ENST00000509601 PCCAP05165 728 aaPredicted RBP23.07■■□□□ 1.28
TPM3-220ENST00000509601 IGKV5-2P06315 115 aa23.07■■□□□ 1.28
TPM3-220ENST00000509601 EIF6P56537 245 aaKnown RBP23.07■■□□□ 1.28
TPM3-220ENST00000509601 AOC3Q16853 763 aa23.07■■□□□ 1.28
TPM3-220ENST00000509601 DPP8Q6V1X1 898 aaPredicted RBP23.07■■□□□ 1.28
TPM3-220ENST00000509601 STK31Q9BXU1 1019 aa23.07■■□□□ 1.28
TPM3-220ENST00000509601 CWC25Q9NXE8 425 aaPredicted RBP23.07■■□□□ 1.28
TPM3-220ENST00000509601 HACL1Q9UJ83 578 aa23.07■■□□□ 1.28
TPM3-220ENST00000509601 SCN4AP35499 1836 aa23.06■■□□□ 1.28
TPM3-220ENST00000509601 TMC4Q7Z404 712 aa23.06■■□□□ 1.28
TPM3-220ENST00000509601 SUPT20HQ8NEM7 779 aa23.06■■□□□ 1.28
TPM3-220ENST00000509601 EXOSC9Q06265 439 aaKnown RBP23.05■■□□□ 1.28
TPM3-220ENST00000509601 GJA3Q9Y6H8 435 aa23.05■■□□□ 1.28
TPM3-220ENST00000509601 EPHX2P34913 555 aa23.04■■□□□ 1.28
TPM3-220ENST00000509601 NIM1KQ8IY84 436 aa23.04■■□□□ 1.28
TPM3-220ENST00000509601 SEC31BQ9NQW1 1179 aa23.04■■□□□ 1.28
TPM3-220ENST00000509601 COL4A1P02462 1669 aa23.03■■□□□ 1.28
TPM3-220ENST00000509601 RPS8P62241 208 aaKnown RBP23.03■■□□□ 1.28
TPM3-220ENST00000509601 KIAA2012Q0VF49 1180 aa23.03■■□□□ 1.28
TPM3-220ENST00000509601 LDHDQ86WU2 507 aa23.03■■□□□ 1.28
TPM3-220ENST00000509601 KLRG1Q96E93 195 aa23.03■■□□□ 1.28
TPM3-220ENST00000509601 PDE8AO60658 829 aa23.02■■□□□ 1.28
TPM3-220ENST00000509601 CXCL9Q07325 125 aa23.02■■□□□ 1.28
TPM3-220ENST00000509601 ZNRF3Q9ULT6 936 aa23.02■■□□□ 1.28
TPM3-220ENST00000509601 HSP90B1P14625 803 aaKnown RBP23.01■■□□□ 1.27
TPM3-220ENST00000509601 SCNN1DP51172 638 aa23.01■■□□□ 1.27
TPM3-220ENST00000509601 EAPPQ56P03 285 aaPredicted RBP23.01■■□□□ 1.27
TPM3-220ENST00000509601 NSFL1CQ9UNZ2 370 aaKnown RBP23.01■■□□□ 1.27
TPM3-220ENST00000509601 ITGBL1O95965 494 aaPredicted RBP23■■□□□ 1.27
TPM3-220ENST00000509601 EPS15P42566 896 aa23■■□□□ 1.27
TPM3-220ENST00000509601 GPSM2P81274 684 aa23■■□□□ 1.27
TPM3-220ENST00000509601 FLIIQ13045 1269 aa23■■□□□ 1.27
TPM3-220ENST00000509601 CWF19L2Q2TBE0 894 aaKnown RBP23■■□□□ 1.27
TPM3-220ENST00000509601 POLLQ9UGP5 575 aa23■■□□□ 1.27
TPM3-220ENST00000509601 CDHR2Q9BYE9 1310 aa23■■□□□ 1.27
TPM3-220ENST00000509601 NEURL1BA8MQ27 555 aa22.99■■□□□ 1.27
TPM3-220ENST00000509601 PNMA8AQ86V59 439 aaPredicted RBP22.99■■□□□ 1.27
TPM3-220ENST00000509601 H7C1W4 665 aa22.98■■□□□ 1.27
TPM3-220ENST00000509601 NEXNQ0ZGT2 675 aa22.98■■□□□ 1.27
TPM3-220ENST00000509601 CCDC152Q4G0S7 254 aa22.98■■□□□ 1.27
TPM3-220ENST00000509601 CCDC85AQ96PX6 553 aaPredicted RBP22.98■■□□□ 1.27
TPM3-220ENST00000509601 CLEC11AQ9Y240 323 aa22.98■■□□□ 1.27
TPM3-220ENST00000509601 ZNF521Q96K83 1311 aa22.98■■□□□ 1.27
TPM3-220ENST00000509601 PASKQ96RG2 1323 aa22.98■■□□□ 1.27
TPM3-220ENST00000509601 DUOX1Q9NRD9 1551 aa22.97■■□□□ 1.27
TPM3-220ENST00000509601 PCNTO95613 3336 aa22.97■■□□□ 1.27
TPM3-220ENST00000509601 YDJCA8MPS7 323 aa22.97■■□□□ 1.27
TPM3-220ENST00000509601 JMYQ8N9B5 988 aa22.97■■□□□ 1.27
TPM3-220ENST00000509601 LRRC37AA6NMS7 1700 aa22.96■■□□□ 1.27
TPM3-220ENST00000509601 LTBP1Q14766 1721 aa22.96■■□□□ 1.27
TPM3-220ENST00000509601 WASHC4Q2M389 1173 aa22.96■■□□□ 1.27
TPM3-220ENST00000509601 TTLL11Q8NHH1 800 aa22.96■■□□□ 1.27
TPM3-220ENST00000509601 DNAAF4Q8WXU2 420 aa22.96■■□□□ 1.27
TPM3-220ENST00000509601 MYH16Q9H6N6 1097 aa22.96■■□□□ 1.27
TPM3-220ENST00000509601 RIMBP2O15034 1052 aa22.95■■□□□ 1.26
TPM3-220ENST00000509601 LMOD1P29536 600 aaPredicted RBP22.95■■□□□ 1.26
TPM3-220ENST00000509601 FKBP5Q13451 457 aaPredicted RBP22.95■■□□□ 1.26
TPM3-220ENST00000509601 CIAPIN1Q6FI81 312 aa22.95■■□□□ 1.26
TPM3-220ENST00000509601 ADAMTSL1Q8N6G6 1762 aa22.95■■□□□ 1.26
TPM3-220ENST00000509601 TBC1D16Q8TBP0 767 aa22.95■■□□□ 1.26
TPM3-220ENST00000509601 PODXL2Q9NZ53 605 aa22.95■■□□□ 1.26
TPM3-220ENST00000509601 C6orf229H3BNL8 230 aa22.94■■□□□ 1.26
TPM3-220ENST00000509601 RAD17O75943 681 aa22.94■■□□□ 1.26
TPM3-220ENST00000509601 GCKRQ14397 625 aa22.94■■□□□ 1.26
TPM3-220ENST00000509601 MAP1SQ66K74 1059 aaPredicted RBP22.94■■□□□ 1.26
TPM3-220ENST00000509601 CNTROBQ8N137 903 aa22.94■■□□□ 1.26
TPM3-220ENST00000509601 GPRC5DQ9NZD1 345 aa22.94■■□□□ 1.26
TPM3-220ENST00000509601 CACNA1FO60840 1977 aa22.94■■□□□ 1.26
TPM3-220ENST00000509601 CASP7P55210 303 aa22.93■■□□□ 1.26
TPM3-220ENST00000509601 CTSWP56202 376 aa22.93■■□□□ 1.26
TPM3-220ENST00000509601 GPR101Q96P66 508 aaPredicted RBP22.93■■□□□ 1.26
TPM3-220ENST00000509601 CREBZFQ9NS37 354 aa22.93■■□□□ 1.26
TPM3-220ENST00000509601 GMPSP49915 693 aaPredicted RBP22.92■■□□□ 1.26
TPM3-220ENST00000509601 TNIP1Q15025 636 aa22.92■■□□□ 1.26
TPM3-220ENST00000509601 USP50Q70EL3 339 aaPredicted RBP22.92■■□□□ 1.26
TPM3-220ENST00000509601 LINS1Q8NG48 757 aa22.92■■□□□ 1.26
TPM3-220ENST00000509601 UBE3BQ7Z3V4 1068 aa22.91■■□□□ 1.26
TPM3-220ENST00000509601 ANKRD18AQ8IVF6 992 aa22.91■■□□□ 1.26
TPM3-220ENST00000509601 PLA2G12BQ9BX93 195 aa22.91■■□□□ 1.26
TPM3-220ENST00000509601 GREM2Q9H772 168 aa22.91■■□□□ 1.26
TPM3-220ENST00000509601 DBNDD1Q9H9R9 158 aa22.91■■□□□ 1.26
TPM3-220ENST00000509601 KCNQ5Q9NR82 932 aa22.91■■□□□ 1.26
TPM3-220ENST00000509601 F6X3S4 739 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms