RNA–Protein interactions for RNA: ENST00000508871.5

NEDD4-209, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 5,707 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-209ENST00000508871 RIMS2Q9UQ26 1411 aa4.66□□□□□ -1.66
NEDD4-209ENST00000508871 PARNO95453 639 aaKnown RBP4.66□□□□□ -1.66
NEDD4-209ENST00000508871 FECHP22830 423 aa4.66□□□□□ -1.66
NEDD4-209ENST00000508871 MCM4P33991 863 aa4.66□□□□□ -1.66
NEDD4-209ENST00000508871 PLCB3Q01970 1234 aa4.66□□□□□ -1.66
NEDD4-209ENST00000508871 NUCB1Q02818 461 aa4.66□□□□□ -1.66
NEDD4-209ENST00000508871 INF2Q27J81 1249 aa4.66□□□□□ -1.66
NEDD4-209ENST00000508871 SYCP2LQ5T4T6 812 aa4.66□□□□□ -1.66
NEDD4-209ENST00000508871 C10orf62Q5T681 223 aaPredicted RBP4.66□□□□□ -1.66
NEDD4-209ENST00000508871 FANCLQ9NW38 375 aa4.66□□□□□ -1.66
NEDD4-209ENST00000508871 DCTN4Q9UJW0 460 aa4.66□□□□□ -1.66
NEDD4-209ENST00000508871 ATP7BP35670 1465 aa4.66□□□□□ -1.66
NEDD4-209ENST00000508871 DUSP9Q99956 384 aaKnown RBP4.66□□□□□ -1.66
NEDD4-209ENST00000508871 NOB1Q9ULX3 412 aaKnown RBP4.66□□□□□ -1.66
NEDD4-209ENST00000508871 TNRQ92752 1358 aa4.66□□□□□ -1.66
NEDD4-209ENST00000508871 CHD2O14647 1828 aaKnown RBP4.66□□□□□ -1.66
NEDD4-209ENST00000508871 RAPGEF3O95398 923 aa4.66□□□□□ -1.66
NEDD4-209ENST00000508871 TAF12Q16514 161 aa4.66□□□□□ -1.66
NEDD4-209ENST00000508871 CDC42BPGQ6DT37 1551 aa4.66□□□□□ -1.66
NEDD4-209ENST00000508871 CFAP65Q6ZU64 1925 aaKnown RBP4.66□□□□□ -1.66
NEDD4-209ENST00000508871 CDCA7Q9BWT1 371 aaPredicted RBP4.66□□□□□ -1.66
NEDD4-209ENST00000508871 ZBTB3Q9H5J0 574 aa4.66□□□□□ -1.66
NEDD4-209ENST00000508871 TRIM17Q9Y577 477 aa4.66□□□□□ -1.66
NEDD4-209ENST00000508871 FMN2Q9NZ56 1722 aa4.66□□□□□ -1.66
NEDD4-209ENST00000508871 DISP3Q9P2K9 1392 aa4.65□□□□□ -1.66
NEDD4-209ENST00000508871 PLEKHG1Q9ULL1 1385 aa4.65□□□□□ -1.66
NEDD4-209ENST00000508871 LARP1BQ659C4 914 aaKnown RBP4.65□□□□□ -1.66
NEDD4-209ENST00000508871 TRIM50Q86XT4 487 aa4.65□□□□□ -1.66
NEDD4-209ENST00000508871 ZNHIT6Q9NWK9 470 aaKnown RBP4.65□□□□□ -1.66
NEDD4-209ENST00000508871 MAPK9P45984 424 aa4.65□□□□□ -1.66
NEDD4-209ENST00000508871 AS3MTQ9HBK9 375 aa4.65□□□□□ -1.66
NEDD4-209ENST00000508871 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP4.65□□□□□ -1.662e-6■■■■■ 27.4
NEDD4-209ENST00000508871 BLMP54132 1417 aaPredicted RBP4.65□□□□□ -1.66
NEDD4-209ENST00000508871 MYBBP1AQ9BQG0 1328 aaKnown RBP4.65□□□□□ -1.66
NEDD4-209ENST00000508871 DPF3Q92784 378 aa4.65□□□□□ -1.67
NEDD4-209ENST00000508871 TESK2Q96S53 571 aa4.65□□□□□ -1.67
NEDD4-209ENST00000508871 CEP83Q9Y592 693 aa4.65□□□□□ -1.67
NEDD4-209ENST00000508871 DDAH1O94760 285 aa4.65□□□□□ -1.67
NEDD4-209ENST00000508871 DDX10Q13206 875 aaKnown RBP4.65□□□□□ -1.67
NEDD4-209ENST00000508871 SF3B2Q13435 895 aaKnown RBP4.65□□□□□ -1.67
NEDD4-209ENST00000508871 TBC1D9Q6ZT07 1266 aa4.65□□□□□ -1.67
NEDD4-209ENST00000508871 FAM43BQ6ZT52 329 aaPredicted RBP4.65□□□□□ -1.67
NEDD4-209ENST00000508871 ST7Q9NRC1 585 aa4.65□□□□□ -1.67
NEDD4-209ENST00000508871 BSDC1Q9NW68 430 aaPredicted RBP4.65□□□□□ -1.67
NEDD4-209ENST00000508871 USP25Q9UHP3 1055 aa4.65□□□□□ -1.67
NEDD4-209ENST00000508871 NOD1Q9Y239 953 aa4.65□□□□□ -1.67
NEDD4-209ENST00000508871 PTCH1Q13635 1447 aa4.65□□□□□ -1.67
NEDD4-209ENST00000508871 LRPPRCP42704 1394 aaKnown RBP4.65□□□□□ -1.67
NEDD4-209ENST00000508871 ZMYM3Q14202 1370 aa4.65□□□□□ -1.67
NEDD4-209ENST00000508871 SOWAHDA6NJG2 315 aa4.65□□□□□ -1.67
NEDD4-209ENST00000508871 EVA1CP58658 441 aa4.65□□□□□ -1.67
NEDD4-209ENST00000508871 MSL1Q68DK7 614 aa4.65□□□□□ -1.67
NEDD4-209ENST00000508871 RSRC2Q7L4I2 434 aaKnown RBP4.65□□□□□ -1.67
NEDD4-209ENST00000508871 ZBTB46Q86UZ6 589 aa4.65□□□□□ -1.67
NEDD4-209ENST00000508871 RSPH9Q9H1X1 276 aaPredicted RBP4.65□□□□□ -1.67
NEDD4-209ENST00000508871 PPP4R2Q9NY27 417 aa4.65□□□□□ -1.67
NEDD4-209ENST00000508871 ANAPC4Q9UJX5 808 aa4.65□□□□□ -1.67
NEDD4-209ENST00000508871 ZNF652Q9Y2D9 606 aa4.65□□□□□ -1.67
NEDD4-209ENST00000508871 DAAM1Q9Y4D1 1078 aa4.65□□□□□ -1.67
NEDD4-209ENST00000508871 FDX1P10109 184 aa4.64□□□□□ -1.67
NEDD4-209ENST00000508871 GRIPAP1Q4V328 841 aa4.64□□□□□ -1.67
NEDD4-209ENST00000508871 HS2ST1Q7LGA3 356 aa4.64□□□□□ -1.67
NEDD4-209ENST00000508871 CABLES1Q8TDN4 633 aa4.64□□□□□ -1.67
NEDD4-209ENST00000508871 SUDS3Q9H7L9 328 aaPredicted RBP4.64□□□□□ -1.67
NEDD4-209ENST00000508871 YTHDC2Q9H6S0 1430 aaKnown RBP4.64□□□□□ -1.67
NEDD4-209ENST00000508871 RASSF10A6NK89 507 aa4.64□□□□□ -1.67
NEDD4-209ENST00000508871 SMTNL1A8MU46 457 aa4.64□□□□□ -1.67
NEDD4-209ENST00000508871 GRAMD1BQ3KR37 738 aa4.64□□□□□ -1.67
NEDD4-209ENST00000508871 TPCN2Q8NHX9 752 aa4.64□□□□□ -1.67
NEDD4-209ENST00000508871 ATG7O95352 703 aa4.64□□□□□ -1.67
NEDD4-209ENST00000508871 UBR7Q8N806 425 aa4.64□□□□□ -1.67
NEDD4-209ENST00000508871 MTMR14Q8NCE2 650 aa4.64□□□□□ -1.67
NEDD4-209ENST00000508871 IPO4Q8TEX9 1081 aaKnown RBP4.64□□□□□ -1.67
NEDD4-209ENST00000508871 TIGD1Q96MW7 591 aa4.64□□□□□ -1.67
NEDD4-209ENST00000508871 EPB41L2O43491 1005 aaKnown RBP4.64□□□□□ -1.67
NEDD4-209ENST00000508871 HCLS1P14317 486 aaPredicted RBP4.64□□□□□ -1.67
NEDD4-209ENST00000508871 MAN1A1P33908 653 aa4.64□□□□□ -1.67
NEDD4-209ENST00000508871 EML3Q32P44 896 aa4.64□□□□□ -1.67
NEDD4-209ENST00000508871 CNNM4Q6P4Q7 775 aa4.64□□□□□ -1.67
NEDD4-209ENST00000508871 APPBP2Q92624 585 aa4.64□□□□□ -1.67
NEDD4-209ENST00000508871 SPACA7Q96KW9 195 aa4.64□□□□□ -1.67
NEDD4-209ENST00000508871 PRKRIP1Q9H875 184 aaPredicted RBP4.64□□□□□ -1.67
NEDD4-209ENST00000508871 PCDH12Q9NPG4 1184 aa4.64□□□□□ -1.67
NEDD4-209ENST00000508871 SPG7Q9UQ90 795 aa4.64□□□□□ -1.67
NEDD4-209ENST00000508871 PIK3R4Q99570 1358 aa4.64□□□□□ -1.67
NEDD4-209ENST00000508871 KIF1AQ12756 1690 aa4.63□□□□□ -1.67
NEDD4-209ENST00000508871 KRT20P35900 424 aa4.63□□□□□ -1.67
NEDD4-209ENST00000508871 RAPGEF1Q13905 1077 aa4.63□□□□□ -1.67
NEDD4-209ENST00000508871 MYRIPQ8NFW9 859 aa4.63□□□□□ -1.67
NEDD4-209ENST00000508871 CCDC47Q96A33 483 aaKnown RBP4.63□□□□□ -1.67
NEDD4-209ENST00000508871 NBPF3Q9H094 633 aa4.63□□□□□ -1.67
NEDD4-209ENST00000508871 ANO8Q9HCE9 1232 aaPredicted RBP4.63□□□□□ -1.67
NEDD4-209ENST00000508871 TTF2Q9UNY4 1162 aaKnown RBP4.63□□□□□ -1.67
NEDD4-209ENST00000508871 USP17L3A6NCW0 530 aa4.63□□□□□ -1.67
NEDD4-209ENST00000508871 USP17L4A6NCW7 530 aa4.63□□□□□ -1.67
NEDD4-209ENST00000508871 USP17L5A8MUK1 530 aa4.63□□□□□ -1.67
NEDD4-209ENST00000508871 TAGLNQ01995 201 aaKnown RBP4.63□□□□□ -1.67
NEDD4-209ENST00000508871 TRIM14Q14142 442 aa4.63□□□□□ -1.67
NEDD4-209ENST00000508871 USP17L2Q6R6M4 530 aa4.63□□□□□ -1.67
NEDD4-209ENST00000508871 USP17L1Q7RTZ2 530 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms