RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 GTF3C6Q969F1 213 aa20.9■□□□□ 0.94
NUP54-205ENST00000507257 MRC1P22897 1456 aa20.89■□□□□ 0.93
NUP54-205ENST00000507257 ATL3Q6DD88 541 aa20.89■□□□□ 0.93
NUP54-205ENST00000507257 PLPPR3Q6T4P5 718 aa20.89■□□□□ 0.93
NUP54-205ENST00000507257 TFIP11Q9UBB9 837 aaKnown RBP20.89■□□□□ 0.93
NUP54-205ENST00000507257 SOX12O15370 315 aa20.88■□□□□ 0.93
NUP54-205ENST00000507257 TUBB4AP04350 444 aa20.88■□□□□ 0.93
NUP54-205ENST00000507257 GSDMDP57764 484 aa20.88■□□□□ 0.93
NUP54-205ENST00000507257 DHX8Q14562 1220 aaKnown RBP20.88■□□□□ 0.93
NUP54-205ENST00000507257 FAM227BQ96M60 508 aa20.88■□□□□ 0.93
NUP54-205ENST00000507257 CHPF2Q9P2E5 772 aa20.88■□□□□ 0.93
NUP54-205ENST00000507257 RFX7Q2KHR2 1363 aa20.88■□□□□ 0.93
NUP54-205ENST00000507257 CCDC66A2RUB6 948 aa20.87■□□□□ 0.93
NUP54-205ENST00000507257 KCNJ6P48051 423 aa20.87■□□□□ 0.93
NUP54-205ENST00000507257 CCZ1BP86790 482 aa20.87■□□□□ 0.93
NUP54-205ENST00000507257 CCZ1P86791 482 aaPredicted RBP20.87■□□□□ 0.93
NUP54-205ENST00000507257 KMT5BQ4FZB7 885 aa20.87■□□□□ 0.93
NUP54-205ENST00000507257 AACSQ86V21 672 aa20.87■□□□□ 0.93
NUP54-205ENST00000507257 LMO7Q8WWI1 1683 aa20.87■□□□□ 0.93
NUP54-205ENST00000507257 UTYO14607 1347 aa20.87■□□□□ 0.93
NUP54-205ENST00000507257 LLPHQ9BRT6 129 aaKnown RBP20.86■□□□□ 0.93
NUP54-205ENST00000507257 RCOR1Q9UKL0 485 aa20.86■□□□□ 0.93
NUP54-205ENST00000507257 ZNF215Q9UL58 517 aaPredicted RBP20.86■□□□□ 0.93
NUP54-205ENST00000507257 TNRQ92752 1358 aa20.86■□□□□ 0.93
NUP54-205ENST00000507257 SKILP12757 684 aa20.86■□□□□ 0.93
NUP54-205ENST00000507257 NAA30Q147X3 362 aaPredicted RBP20.86■□□□□ 0.93
NUP54-205ENST00000507257 CCAR2Q8N163 923 aaKnown RBP20.86■□□□□ 0.93
NUP54-205ENST00000507257 IMPACTQ9P2X3 320 aa20.86■□□□□ 0.93
NUP54-205ENST00000507257 SLU7O95391 586 aaKnown RBP20.85■□□□□ 0.93
NUP54-205ENST00000507257 NAA16Q6N069 864 aaPredicted RBP20.85■□□□□ 0.93
NUP54-205ENST00000507257 OSBPL5Q9H0X9 879 aaPredicted RBP20.85■□□□□ 0.93
NUP54-205ENST00000507257 ANO10Q9NW15 660 aa20.85■□□□□ 0.93
NUP54-205ENST00000507257 A0A0D9SFI3 127 aa20.84■□□□□ 0.93
NUP54-205ENST00000507257 SMARCC2Q8TAQ2 1214 aa20.84■□□□□ 0.93
NUP54-205ENST00000507257 L2HGDHQ9H9P8 463 aa20.84■□□□□ 0.93
NUP54-205ENST00000507257 NCAPD2Q15021 1401 aa20.84■□□□□ 0.93
NUP54-205ENST00000507257 CCDC69A6NI79 296 aa20.84■□□□□ 0.93
NUP54-205ENST00000507257 DTNBO60941 627 aa20.84■□□□□ 0.93
NUP54-205ENST00000507257 DDX54Q8TDD1 881 aaKnown RBP20.84■□□□□ 0.93
NUP54-205ENST00000507257 BRF1Q92994 677 aa20.84■□□□□ 0.93
NUP54-205ENST00000507257 DBF4Q9UBU7 674 aaPredicted RBP20.84■□□□□ 0.93
NUP54-205ENST00000507257 EIF2S2P20042 333 aaKnown RBP20.83■□□□□ 0.93
NUP54-205ENST00000507257 ADD1P35611 737 aaKnown RBP20.83■□□□□ 0.93
NUP54-205ENST00000507257 C11orf57Q6ZUT1 292 aaPredicted RBP20.83■□□□□ 0.93
NUP54-205ENST00000507257 ANKARQ7Z5J8 1434 aa20.83■□□□□ 0.93
NUP54-205ENST00000507257 C9orf78Q9NZ63 289 aaPredicted RBP20.83■□□□□ 0.93
NUP54-205ENST00000507257 RGPD8O14715 1765 aaPredicted RBP20.83■□□□□ 0.92
NUP54-205ENST00000507257 OVOS2A0A0G2JMS6 1433 aa20.82■□□□□ 0.92
NUP54-205ENST00000507257 USP27XA6NNY8 438 aa20.82■□□□□ 0.92
NUP54-205ENST00000507257 SASH1O94885 1247 aa20.82■□□□□ 0.92
NUP54-205ENST00000507257 COL9A3Q14050 684 aaPredicted RBP20.82■□□□□ 0.92
NUP54-205ENST00000507257 DHX40Q8IX18 779 aaKnown RBP20.82■□□□□ 0.92
NUP54-205ENST00000507257 EAF2Q96CJ1 260 aaPredicted RBP20.82■□□□□ 0.92
NUP54-205ENST00000507257 TAF5LO75529 589 aa20.82■□□□□ 0.92
NUP54-205ENST00000507257 FBXO38Q6PIJ6 1188 aa20.82■□□□□ 0.92
NUP54-205ENST00000507257 ERBB3P21860 1342 aa20.82■□□□□ 0.92
NUP54-205ENST00000507257 BECN2A8MW95 431 aa20.81■□□□□ 0.92
NUP54-205ENST00000507257 H3BQV1 296 aa20.81■□□□□ 0.92
NUP54-205ENST00000507257 IGSF3O75054 1194 aa20.81■□□□□ 0.92
NUP54-205ENST00000507257 G3BP1Q13283 466 aaKnown RBP eCLIP20.81■□□□□ 0.92
NUP54-205ENST00000507257 IFFO2Q5TF58 517 aa20.81■□□□□ 0.92
NUP54-205ENST00000507257 KSR2Q6VAB6 950 aa20.81■□□□□ 0.92
NUP54-205ENST00000507257 NGDNQ8NEJ9 315 aaKnown RBP20.81■□□□□ 0.92
NUP54-205ENST00000507257 ZNF592Q92610 1267 aa20.81■□□□□ 0.92
NUP54-205ENST00000507257 FSD1Q9BTV5 496 aa20.81■□□□□ 0.92
NUP54-205ENST00000507257 NAT10Q9H0A0 1025 aaKnown RBP20.81■□□□□ 0.92
NUP54-205ENST00000507257 H2AFXP16104 143 aaPredicted RBP20.8■□□□□ 0.92
NUP54-205ENST00000507257 SNW1Q13573 536 aaKnown RBP20.8■□□□□ 0.92
NUP54-205ENST00000507257 ENGASEQ8NFI3 743 aa20.8■□□□□ 0.92
NUP54-205ENST00000507257 NEK1Q96PY6 1258 aa20.8■□□□□ 0.92
NUP54-205ENST00000507257 PA2G4Q9UQ80 394 aaKnown RBP20.8■□□□□ 0.92
NUP54-205ENST00000507257 NUTM2FA1L443 756 aa20.8■□□□□ 0.92
NUP54-205ENST00000507257 PSDA5PKW4 1024 aaPredicted RBP20.8■□□□□ 0.92
NUP54-205ENST00000507257 NUTM2GQ5VZR2 741 aa20.8■□□□□ 0.92
NUP54-205ENST00000507257 CCDC73Q6ZRK6 1079 aa20.8■□□□□ 0.92
NUP54-205ENST00000507257 CEP57L1Q8IYX8 460 aa20.8■□□□□ 0.92
NUP54-205ENST00000507257 BPIFA3Q9BQP9 254 aa20.8■□□□□ 0.92
NUP54-205ENST00000507257 JAK2O60674 1132 aa20.79■□□□□ 0.92
NUP54-205ENST00000507257 FAM160A1Q05DH4 1040 aa20.79■□□□□ 0.92
NUP54-205ENST00000507257 CCAR1Q8IX12 1150 aaKnown RBP20.79■□□□□ 0.92
NUP54-205ENST00000507257 HEG1Q9ULI3 1381 aa20.79■□□□□ 0.92
NUP54-205ENST00000507257 KINO60870 393 aaKnown RBP20.78■□□□□ 0.92
NUP54-205ENST00000507257 NLRP6P59044 892 aa20.78■□□□□ 0.92
NUP54-205ENST00000507257 ARID5BQ14865 1188 aa20.78■□□□□ 0.92
NUP54-205ENST00000507257 CCDC150Q8NCX0 1101 aa20.78■□□□□ 0.92
NUP54-205ENST00000507257 LINS1Q8NG48 757 aa20.78■□□□□ 0.92
NUP54-205ENST00000507257 TCEANC2Q96MN5 208 aa20.78■□□□□ 0.92
NUP54-205ENST00000507257 ZNF396Q96N95 335 aaPredicted RBP20.78■□□□□ 0.92
NUP54-205ENST00000507257 MAP3K2Q9Y2U5 619 aa20.78■□□□□ 0.92
NUP54-205ENST00000507257 TAF6LQ9Y6J9 622 aa20.78■□□□□ 0.92
NUP54-205ENST00000507257 U3KPZ7 1027 aaPredicted RBP20.78■□□□□ 0.92
NUP54-205ENST00000507257 PFKFB2O60825 505 aa20.78■□□□□ 0.92
NUP54-205ENST00000507257 BMS1Q14692 1282 aaKnown RBP20.78■□□□□ 0.92
NUP54-205ENST00000507257 ELF2Q15723 593 aa20.78■□□□□ 0.92
NUP54-205ENST00000507257 ZNF589Q86UQ0 364 aaPredicted RBP20.78■□□□□ 0.92
NUP54-205ENST00000507257 USP16Q9Y5T5 823 aa20.78■□□□□ 0.92
NUP54-205ENST00000507257 GRM8O00222 908 aa20.77■□□□□ 0.92
NUP54-205ENST00000507257 STK3Q13188 491 aa20.77■□□□□ 0.92
NUP54-205ENST00000507257 CCDC93Q567U6 631 aa20.77■□□□□ 0.92
NUP54-205ENST00000507257 LTN1O94822 1766 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms