RNA–Protein interactions for RNA: ENST00000506941.1

NPHP4-210, Transcript of nephrocystin 4, humanhuman

TSL 4

Gene NPHP4, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-210ENST00000506941 SNED1Q8TER0 1413 aa23.04■■□□□ 1.28
NPHP4-210ENST00000506941 NFKBIEO00221 500 aa23.02■■□□□ 1.28
NPHP4-210ENST00000506941 GRM8O00222 908 aa23.02■■□□□ 1.28
NPHP4-210ENST00000506941 HSP90B1P14625 803 aaKnown RBP23.02■■□□□ 1.28
NPHP4-210ENST00000506941 CTSWP56202 376 aa23.02■■□□□ 1.28
NPHP4-210ENST00000506941 RASSF7Q02833 373 aa23.02■■□□□ 1.28
NPHP4-210ENST00000506941 DDX46Q7L014 1031 aaKnown RBP23.02■■□□□ 1.28
NPHP4-210ENST00000506941 ARHGAP45Q92619 1136 aa23.02■■□□□ 1.28
NPHP4-210ENST00000506941 API5Q9BZZ5 524 aaKnown RBP23.02■■□□□ 1.28
NPHP4-210ENST00000506941 TNNQ9UQP3 1299 aa23.02■■□□□ 1.28
NPHP4-210ENST00000506941 LTBP1Q14766 1721 aa23.02■■□□□ 1.28
NPHP4-210ENST00000506941 PPEF1O14829 653 aaPredicted RBP23.01■■□□□ 1.27
NPHP4-210ENST00000506941 FRAT1Q92837 279 aaPredicted RBP23.01■■□□□ 1.27
NPHP4-210ENST00000506941 PLA2G12BQ9BX93 195 aa23.01■■□□□ 1.27
NPHP4-210ENST00000506941 A0A1B0GUL6 1792 aa23.01■■□□□ 1.27
NPHP4-210ENST00000506941 TRIM27P14373 513 aa23■■□□□ 1.27
NPHP4-210ENST00000506941 PRELPP51888 382 aa23■■□□□ 1.27
NPHP4-210ENST00000506941 GRAPQ13588 217 aa23■■□□□ 1.27
NPHP4-210ENST00000506941 TTLL11Q8NHH1 800 aa23■■□□□ 1.27
NPHP4-210ENST00000506941 GRAPLQ8TC17 118 aaPredicted RBP23■■□□□ 1.27
NPHP4-210ENST00000506941 CCDC85AQ96PX6 553 aaPredicted RBP23■■□□□ 1.27
NPHP4-210ENST00000506941 SEC31BQ9NQW1 1179 aa23■■□□□ 1.27
NPHP4-210ENST00000506941 CCDC152Q4G0S7 254 aa22.99■■□□□ 1.27
NPHP4-210ENST00000506941 CELF1Q92879 486 aaKnown RBP22.99■■□□□ 1.27
NPHP4-210ENST00000506941 C9orf78Q9NZ63 289 aaPredicted RBP22.99■■□□□ 1.27
NPHP4-210ENST00000506941 UTYO14607 1347 aa22.99■■□□□ 1.27
NPHP4-210ENST00000506941 NBPF7P0C2Y1 421 aaPredicted RBP22.98■■□□□ 1.27
NPHP4-210ENST00000506941 CCDC93Q567U6 631 aa22.98■■□□□ 1.27
NPHP4-210ENST00000506941 SOGA3Q5TF21 947 aa22.98■■□□□ 1.27
NPHP4-210ENST00000506941 ATF7IPQ6VMQ6 1270 aa22.98■■□□□ 1.27
NPHP4-210ENST00000506941 IPO8O15397 1037 aaKnown RBP22.97■■□□□ 1.27
NPHP4-210ENST00000506941 CCT4P50991 539 aaKnown RBP22.97■■□□□ 1.27
NPHP4-210ENST00000506941 FOXO4P98177 505 aa22.97■■□□□ 1.27
NPHP4-210ENST00000506941 EPHA10Q5JZY3 1008 aa22.97■■□□□ 1.27
NPHP4-210ENST00000506941 USP44Q9H0E7 712 aa22.97■■□□□ 1.27
NPHP4-210ENST00000506941 GREM2Q9H772 168 aa22.97■■□□□ 1.27
NPHP4-210ENST00000506941 RTL9Q8NET4 1388 aa22.97■■□□□ 1.27
NPHP4-210ENST00000506941 DUOX1Q9NRD9 1551 aa22.97■■□□□ 1.27
NPHP4-210ENST00000506941 BBOX1O75936 387 aa22.96■■□□□ 1.27
NPHP4-210ENST00000506941 KAZALD1Q96I82 304 aa22.96■■□□□ 1.27
NPHP4-210ENST00000506941 ATP6V0A2Q9Y487 856 aa22.96■■□□□ 1.27
NPHP4-210ENST00000506941 CSF1RP07333 972 aa22.95■■□□□ 1.26
NPHP4-210ENST00000506941 YY1P25490 414 aa22.95■■□□□ 1.26
NPHP4-210ENST00000506941 ZKSCAN2Q63HK3 967 aa22.95■■□□□ 1.26
NPHP4-210ENST00000506941 SUCLG2Q96I99 432 aa22.95■■□□□ 1.26
NPHP4-210ENST00000506941 LTBP3Q9NS15 1303 aa22.95■■□□□ 1.26
NPHP4-210ENST00000506941 FAM161AQ3B820 660 aa22.94■■□□□ 1.26
NPHP4-210ENST00000506941 INTS3Q68E01 1043 aaKnown RBP22.94■■□□□ 1.26
NPHP4-210ENST00000506941 CLUAP1Q96AJ1 413 aa22.94■■□□□ 1.26
NPHP4-210ENST00000506941 TAOK3Q9H2K8 898 aa22.94■■□□□ 1.26
NPHP4-210ENST00000506941 RCAN3Q9UKA8 241 aa22.94■■□□□ 1.26
NPHP4-210ENST00000506941 RPS8P62241 208 aaKnown RBP22.93■■□□□ 1.26
NPHP4-210ENST00000506941 C9orf131Q5VYM1 1079 aa22.93■■□□□ 1.26
NPHP4-210ENST00000506941 CC2D2BQ6DHV5 1058 aa22.93■■□□□ 1.26
NPHP4-210ENST00000506941 SP8Q8IXZ3 490 aa22.93■■□□□ 1.26
NPHP4-210ENST00000506941 RTKN2Q8IZC4 609 aa22.93■■□□□ 1.26
NPHP4-210ENST00000506941 LMNB1P20700 586 aa22.92■■□□□ 1.26
NPHP4-210ENST00000506941 FKBP4Q02790 459 aaKnown RBP eCLIP22.92■■□□□ 1.26
NPHP4-210ENST00000506941 RNF181Q9P0P0 153 aa22.92■■□□□ 1.26
NPHP4-210ENST00000506941 COL4A5P29400 1685 aa22.91■■□□□ 1.26
NPHP4-210ENST00000506941 LMBR1LQ6UX01 489 aa22.91■■□□□ 1.26
NPHP4-210ENST00000506941 TMC4Q7Z404 712 aa22.91■■□□□ 1.26
NPHP4-210ENST00000506941 RLBP1P12271 317 aa22.9■■□□□ 1.26
NPHP4-210ENST00000506941 ITGA6P23229 1130 aa22.9■■□□□ 1.26
NPHP4-210ENST00000506941 PSMD1Q99460 953 aa22.9■■□□□ 1.26
NPHP4-210ENST00000506941 BICC1Q9H694 974 aaKnown RBP22.9■■□□□ 1.26
NPHP4-210ENST00000506941 ANKRD18AQ8IVF6 992 aa22.89■■□□□ 1.25
NPHP4-210ENST00000506941 TMEM57Q8N5G2 664 aa22.89■■□□□ 1.25
NPHP4-210ENST00000506941 ANKRD44Q8N8A2 993 aa22.89■■□□□ 1.25
NPHP4-210ENST00000506941 CDC5LQ99459 802 aaKnown RBP22.89■■□□□ 1.25
NPHP4-210ENST00000506941 MEIS3Q99687 375 aa22.89■■□□□ 1.25
NPHP4-210ENST00000506941 ZNF277Q9NRM2 450 aaPredicted RBP22.89■■□□□ 1.25
NPHP4-210ENST00000506941 GRIPAP1Q4V328 841 aa22.88■■□□□ 1.25
NPHP4-210ENST00000506941 CHMP3Q9Y3E7 222 aa22.88■■□□□ 1.25
NPHP4-210ENST00000506941 RABL6Q3YEC7 729 aaPredicted RBP22.87■■□□□ 1.25
NPHP4-210ENST00000506941 DZIP1LQ8IYY4 767 aaKnown RBP22.86■■□□□ 1.25
NPHP4-210ENST00000506941 MPNDQ8N594 471 aa22.86■■□□□ 1.25
NPHP4-210ENST00000506941 TMX4Q9H1E5 349 aaPredicted RBP22.86■■□□□ 1.25
NPHP4-210ENST00000506941 ANKRD18BA2A2Z9 1011 aa22.85■■□□□ 1.25
NPHP4-210ENST00000506941 PLIN1O60240 522 aa22.85■■□□□ 1.25
NPHP4-210ENST00000506941 UBTFL1P0CB47 393 aaPredicted RBP22.85■■□□□ 1.25
NPHP4-210ENST00000506941 GPSM2P81274 684 aa22.85■■□□□ 1.25
NPHP4-210ENST00000506941 IFIT5Q13325 482 aaKnown RBP22.85■■□□□ 1.25
NPHP4-210ENST00000506941 DPP8Q6V1X1 898 aaPredicted RBP22.85■■□□□ 1.25
NPHP4-210ENST00000506941 FTSJ3Q8IY81 847 aaKnown RBP22.85■■□□□ 1.25
NPHP4-210ENST00000506941 RTFDC1Q9BY42 306 aaPredicted RBP22.85■■□□□ 1.25
NPHP4-210ENST00000506941 BSDC1Q9NW68 430 aaPredicted RBP22.85■■□□□ 1.25
NPHP4-210ENST00000506941 IARSP41252 1262 aaKnown RBP22.84■■□□□ 1.25
NPHP4-210ENST00000506941 PANK1Q8TE04 598 aa22.84■■□□□ 1.25
NPHP4-210ENST00000506941 ZNF594Q96JF6 807 aaPredicted RBP22.83■■□□□ 1.25
NPHP4-210ENST00000506941 NSFL1CQ9UNZ2 370 aaKnown RBP22.83■■□□□ 1.25
NPHP4-210ENST00000506941 LRRFIP2Q9Y608 721 aaKnown RBP22.83■■□□□ 1.25
NPHP4-210ENST00000506941 IGHMBP2P38935 993 aaKnown RBP22.82■■□□□ 1.24
NPHP4-210ENST00000506941 CCDC57Q2TAC2 916 aa22.82■■□□□ 1.24
NPHP4-210ENST00000506941 ZNF784Q8NCA9 323 aaPredicted RBP22.82■■□□□ 1.24
NPHP4-210ENST00000506941 POLLQ9UGP5 575 aa22.82■■□□□ 1.24
NPHP4-210ENST00000506941 MINPP1Q9UNW1 487 aa22.82■■□□□ 1.24
NPHP4-210ENST00000506941 ZC3H4Q9UPT8 1303 aaKnown RBP22.82■■□□□ 1.24
NPHP4-210ENST00000506941 PSME4Q14997 1843 aa22.81■■□□□ 1.24
NPHP4-210ENST00000506941 PODXL2Q9NZ53 605 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms