RNA–Protein interactions for RNA: ENST00000506767.1

TCOF1-210, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 869 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-210ENST00000506767 MVPQ14764 893 aaKnown RBP16.17■□□□□ 0.18
TCOF1-210ENST00000506767 EPHA10Q5JZY3 1008 aa16.17■□□□□ 0.18
TCOF1-210ENST00000506767 ITPRIPQ8IWB1 547 aa16.17■□□□□ 0.18
TCOF1-210ENST00000506767 TTLL11Q8NHH1 800 aa16.17■□□□□ 0.18
TCOF1-210ENST00000506767 SUPT16HQ9Y5B9 1047 aaKnown RBP16.17■□□□□ 0.18
TCOF1-210ENST00000506767 GNAI3P08754 354 aa16.16■□□□□ 0.18
TCOF1-210ENST00000506767 CTSWP56202 376 aa16.16■□□□□ 0.18
TCOF1-210ENST00000506767 PIM2Q9P1W9 311 aa16.16■□□□□ 0.18
TCOF1-210ENST00000506767 COG6Q9Y2V7 657 aa16.16■□□□□ 0.18
TCOF1-210ENST00000506767 RTL9Q8NET4 1388 aa16.15■□□□□ 0.18
TCOF1-210ENST00000506767 UBTFL1P0CB47 393 aaPredicted RBP16.15■□□□□ 0.18
TCOF1-210ENST00000506767 RABL6Q3YEC7 729 aaPredicted RBP16.15■□□□□ 0.18
TCOF1-210ENST00000506767 PELP1Q8IZL8 1130 aaKnown RBP16.15■□□□□ 0.18
TCOF1-210ENST00000506767 RPGRQ92834 1020 aaKnown RBP16.15■□□□□ 0.18
TCOF1-210ENST00000506767 RBM17Q96I25 401 aaKnown RBP16.15■□□□□ 0.18
TCOF1-210ENST00000506767 CRAMP1Q96RY5 1269 aa16.15■□□□□ 0.18
TCOF1-210ENST00000506767 ALDH1B1P30837 517 aa16.14■□□□□ 0.17
TCOF1-210ENST00000506767 CCDC152Q4G0S7 254 aa16.14■□□□□ 0.17
TCOF1-210ENST00000506767 ANKRD44Q8N8A2 993 aa16.14■□□□□ 0.17
TCOF1-210ENST00000506767 CNKSR1Q969H4 720 aa16.14■□□□□ 0.17
TCOF1-210ENST00000506767 ZNF622Q969S3 477 aaKnown RBP eCLIP16.14■□□□□ 0.178e-7■■■□□ 17.5
TCOF1-210ENST00000506767 BICC1Q9H694 974 aaKnown RBP16.14■□□□□ 0.17
TCOF1-210ENST00000506767 DDX19BQ9UMR2 479 aa16.14■□□□□ 0.17
TCOF1-210ENST00000506767 HDAC5Q9UQL6 1122 aa16.14■□□□□ 0.17
TCOF1-210ENST00000506767 GPR162Q16538 588 aa16.13■□□□□ 0.17
TCOF1-210ENST00000506767 LMBR1LQ6UX01 489 aa16.13■□□□□ 0.17
TCOF1-210ENST00000506767 DDX46Q7L014 1031 aaKnown RBP16.13■□□□□ 0.17
TCOF1-210ENST00000506767 TTLL6Q8N841 843 aa16.13■□□□□ 0.17
TCOF1-210ENST00000506767 GREM2Q9H772 168 aa16.13■□□□□ 0.17
TCOF1-210ENST00000506767 TAF1P21675 1872 aa16.13■□□□□ 0.17
TCOF1-210ENST00000506767 SLX4Q8IY92 1834 aa16.12■□□□□ 0.17
TCOF1-210ENST00000506767 COL4A1P02462 1669 aa16.12■□□□□ 0.17
TCOF1-210ENST00000506767 SEC31BQ9NQW1 1179 aa16.12■□□□□ 0.17
TCOF1-210ENST00000506767 LRRFIP2Q9Y608 721 aaKnown RBP16.12■□□□□ 0.17
TCOF1-210ENST00000506767 ARFGEF1Q9Y6D6 1849 aa16.12■□□□□ 0.17
TCOF1-210ENST00000506767 CACNA1SQ13698 1873 aa16.12■□□□□ 0.17
TCOF1-210ENST00000506767 GNAI2P04899 355 aa16.11■□□□□ 0.17
TCOF1-210ENST00000506767 GRAPQ13588 217 aa16.11■□□□□ 0.17
TCOF1-210ENST00000506767 DALRD3Q5D0E6 543 aaKnown RBP16.11■□□□□ 0.17
TCOF1-210ENST00000506767 GRAPLQ8TC17 118 aaPredicted RBP16.11■□□□□ 0.17
TCOF1-210ENST00000506767 C7orf43Q8WVR3 580 aa16.11■□□□□ 0.17
TCOF1-210ENST00000506767 CELF1Q92879 486 aaKnown RBP16.11■□□□□ 0.17
TCOF1-210ENST00000506767 CCDC85AQ96PX6 553 aaPredicted RBP16.11■□□□□ 0.17
TCOF1-210ENST00000506767 ZBTB40Q9NUA8 1239 aa16.11■□□□□ 0.17
TCOF1-210ENST00000506767 BBOX1O75936 387 aa16.1■□□□□ 0.17
TCOF1-210ENST00000506767 ITGA6P23229 1130 aa16.1■□□□□ 0.17
TCOF1-210ENST00000506767 FAM161AQ3B820 660 aa16.1■□□□□ 0.17
TCOF1-210ENST00000506767 PRPF40BQ6NWY9 871 aaKnown RBP16.1■□□□□ 0.17
TCOF1-210ENST00000506767 CHMP4BQ9H444 224 aaKnown RBP16.1■□□□□ 0.17
TCOF1-210ENST00000506767 CENPBP07199 599 aaPredicted RBP16.09■□□□□ 0.17
TCOF1-210ENST00000506767 RPS8P62241 208 aaKnown RBP16.09■□□□□ 0.17
TCOF1-210ENST00000506767 MTX1Q13505 466 aa16.09■□□□□ 0.17
TCOF1-210ENST00000506767 WWC3Q9ULE0 1092 aa16.09■□□□□ 0.17
TCOF1-210ENST00000506767 BCS1LQ9Y276 419 aa16.09■□□□□ 0.17
TCOF1-210ENST00000506767 ANKRD18BA2A2Z9 1011 aa16.08■□□□□ 0.16
TCOF1-210ENST00000506767 YBX3P16989 372 aaKnown RBP eCLIP16.08■□□□□ 0.16
TCOF1-210ENST00000506767 IFIT5Q13325 482 aaKnown RBP16.08■□□□□ 0.16
TCOF1-210ENST00000506767 CDC5LQ99459 802 aaKnown RBP16.08■□□□□ 0.16
TCOF1-210ENST00000506767 PPEF1O14829 653 aaPredicted RBP16.07■□□□□ 0.16
TCOF1-210ENST00000506767 RFX5P48382 616 aaPredicted RBP16.07■□□□□ 0.16
TCOF1-210ENST00000506767 CCDC57Q2TAC2 916 aa16.07■□□□□ 0.16
TCOF1-210ENST00000506767 TMC4Q7Z404 712 aa16.07■□□□□ 0.16
TCOF1-210ENST00000506767 ANKRD18AQ8IVF6 992 aa16.07■□□□□ 0.16
TCOF1-210ENST00000506767 SP8Q8IXZ3 490 aa16.07■□□□□ 0.16
TCOF1-210ENST00000506767 CRBNQ96SW2 442 aa16.07■□□□□ 0.16
TCOF1-210ENST00000506767 CHMP3Q9Y3E7 222 aa16.07■□□□□ 0.16
TCOF1-210ENST00000506767 LRRC37AA6NMS7 1700 aa16.07■□□□□ 0.16
TCOF1-210ENST00000506767 SNED1Q8TER0 1413 aa16.06■□□□□ 0.16
TCOF1-210ENST00000506767 ATP8B2P98198 1209 aa16.06■□□□□ 0.16
TCOF1-210ENST00000506767 C1orf115Q9H7X2 142 aa16.06■□□□□ 0.16
TCOF1-210ENST00000506767 ATP6V0A2Q9Y487 856 aa16.06■□□□□ 0.16
TCOF1-210ENST00000506767 C21orf2O43822 256 aa16.05■□□□□ 0.16
TCOF1-210ENST00000506767 CC2D2BQ6DHV5 1058 aa16.05■□□□□ 0.16
TCOF1-210ENST00000506767 SLC51AQ86UW1 340 aa16.05■□□□□ 0.16
TCOF1-210ENST00000506767 ZNF784Q8NCA9 323 aaPredicted RBP16.05■□□□□ 0.16
TCOF1-210ENST00000506767 BSDC1Q9NW68 430 aaPredicted RBP16.05■□□□□ 0.16
TCOF1-210ENST00000506767 UTRNP46939 3433 aa16.05■□□□□ 0.16
TCOF1-210ENST00000506767 SPEF2Q9C093 1822 aa16.05■□□□□ 0.16
TCOF1-210ENST00000506767 PNMA6EA0A0J9YXQ4 647 aa16.04■□□□□ 0.16
TCOF1-210ENST00000506767 IGHMBP2P38935 993 aaKnown RBP16.04■□□□□ 0.16
TCOF1-210ENST00000506767 PTPN12Q05209 780 aaKnown RBP16.04■□□□□ 0.16
TCOF1-210ENST00000506767 SOGA3Q5TF21 947 aa16.04■□□□□ 0.16
TCOF1-210ENST00000506767 CEP85Q6P2H3 762 aa16.04■□□□□ 0.16
TCOF1-210ENST00000506767 OLFM4Q6UX06 510 aa16.04■□□□□ 0.16
TCOF1-210ENST00000506767 ZNF594Q96JF6 807 aaPredicted RBP16.04■□□□□ 0.16
TCOF1-210ENST00000506767 FER1L6Q2WGJ9 1857 aa16.03■□□□□ 0.16
TCOF1-210ENST00000506767 SRGAP3O43295 1099 aa16.03■□□□□ 0.16
TCOF1-210ENST00000506767 POLA2Q14181 598 aa16.03■□□□□ 0.16
TCOF1-210ENST00000506767 RPAP2Q8IXW5 612 aaPredicted RBP16.03■□□□□ 0.16
TCOF1-210ENST00000506767 SSH3Q8TE77 659 aa16.03■□□□□ 0.16
TCOF1-210ENST00000506767 ZNF219Q9P2Y4 722 aaPredicted RBP16.03■□□□□ 0.16
TCOF1-210ENST00000506767 LTBP1Q14766 1721 aa16.02■□□□□ 0.16
TCOF1-210ENST00000506767 GRIN3BO60391 1043 aa16.02■□□□□ 0.16
TCOF1-210ENST00000506767 AAMPQ13685 434 aa16.02■□□□□ 0.16
TCOF1-210ENST00000506767 GRIPAP1Q4V328 841 aa16.02■□□□□ 0.16
TCOF1-210ENST00000506767 CCDC93Q567U6 631 aa16.02■□□□□ 0.16
TCOF1-210ENST00000506767 KLHDC4Q8TBB5 520 aa16.02■□□□□ 0.16
TCOF1-210ENST00000506767 MPHOSPH8Q99549 860 aa16.02■□□□□ 0.16
TCOF1-210ENST00000506767 COPRSQ9NQ92 184 aa16.02■□□□□ 0.16
TCOF1-210ENST00000506767 MINPP1Q9UNW1 487 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms