RNA–Protein interactions for RNA: ENST00000506542.1

SERF1B-204, Transcript of small EDRK-rich factor 1B, humanhuman

TSL 3 BASIC

Gene SERF1B, Length 1,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SERF1B-204ENST00000506542 NPR1P16066 1061 aa17.48■□□□□ 0.39
SERF1B-204ENST00000506542 FKBP5Q13451 457 aaPredicted RBP17.48■□□□□ 0.39
SERF1B-204ENST00000506542 CRY2Q49AN0 593 aa17.48■□□□□ 0.39
SERF1B-204ENST00000506542 ZNF784Q8NCA9 323 aaPredicted RBP17.48■□□□□ 0.39
SERF1B-204ENST00000506542 SH3TC1Q8TE82 1336 aa17.48■□□□□ 0.39
SERF1B-204ENST00000506542 NFKBIEO00221 500 aa17.47■□□□□ 0.39
SERF1B-204ENST00000506542 DDX58O95786 925 aaKnown RBP17.47■□□□□ 0.39
SERF1B-204ENST00000506542 ZNF526Q8TF50 670 aaPredicted RBP17.47■□□□□ 0.39
SERF1B-204ENST00000506542 KDM2BQ8NHM5 1336 aa17.46■□□□□ 0.39
SERF1B-204ENST00000506542 RPGRQ92834 1020 aaKnown RBP17.46■□□□□ 0.39
SERF1B-204ENST00000506542 CNKSR1Q969H4 720 aa17.46■□□□□ 0.39
SERF1B-204ENST00000506542 RIC1Q4ADV7 1423 aa17.46■□□□□ 0.38
SERF1B-204ENST00000506542 SLC10A5Q5PT55 438 aa17.45■□□□□ 0.38
SERF1B-204ENST00000506542 C9orf131Q5VYM1 1079 aa17.45■□□□□ 0.38
SERF1B-204ENST00000506542 INTS3Q68E01 1043 aaKnown RBP17.45■□□□□ 0.38
SERF1B-204ENST00000506542 NLRP3Q96P20 1036 aa17.45■□□□□ 0.38
SERF1B-204ENST00000506542 C7orf43Q8WVR3 580 aa17.45■□□□□ 0.38
SERF1B-204ENST00000506542 CCDC85AQ96PX6 553 aaPredicted RBP17.45■□□□□ 0.38
SERF1B-204ENST00000506542 CHMP4BQ9H444 224 aaKnown RBP17.45■□□□□ 0.38
SERF1B-204ENST00000506542 TRIM28Q13263 835 aaKnown RBP17.44■□□□□ 0.38
SERF1B-204ENST00000506542 ZBTB40Q9NUA8 1239 aa17.44■□□□□ 0.38
SERF1B-204ENST00000506542 CWC25Q9NXE8 425 aaPredicted RBP17.44■□□□□ 0.38
SERF1B-204ENST00000506542 PDZRN3Q9UPQ7 1066 aa17.44■□□□□ 0.38
SERF1B-204ENST00000506542 NEURL1BA8MQ27 555 aa17.43■□□□□ 0.38
SERF1B-204ENST00000506542 IRS4O14654 1257 aaPredicted RBP17.43■□□□□ 0.38
SERF1B-204ENST00000506542 CENPQQ7L2Z9 268 aaPredicted RBP17.43■□□□□ 0.38
SERF1B-204ENST00000506542 DNAAF4Q8WXU2 420 aa17.43■□□□□ 0.38
SERF1B-204ENST00000506542 RNF181Q9P0P0 153 aa17.43■□□□□ 0.38
SERF1B-204ENST00000506542 ZBTB7BO15156 539 aaPredicted RBP17.42■□□□□ 0.38
SERF1B-204ENST00000506542 HOXA10P31260 410 aaPredicted RBP17.42■□□□□ 0.38
SERF1B-204ENST00000506542 ZBTB38Q8NAP3 1195 aaPredicted RBP17.42■□□□□ 0.38
SERF1B-204ENST00000506542 PCDHB15Q9Y5E8 787 aa17.42■□□□□ 0.38
SERF1B-204ENST00000506542 TIAM2Q8IVF5 1701 aa17.42■□□□□ 0.38
SERF1B-204ENST00000506542 CCDC191Q8NCU4 936 aa17.42■□□□□ 0.38
SERF1B-204ENST00000506542 RBM17Q96I25 401 aaKnown RBP17.41■□□□□ 0.38
SERF1B-204ENST00000506542 PCCAP05165 728 aaPredicted RBP17.4■□□□□ 0.38
SERF1B-204ENST00000506542 ALDH1B1P30837 517 aa17.4■□□□□ 0.38
SERF1B-204ENST00000506542 NEXNQ0ZGT2 675 aa17.4■□□□□ 0.38
SERF1B-204ENST00000506542 SLC4A10Q6U841 1118 aa17.4■□□□□ 0.38
SERF1B-204ENST00000506542 UBE3BQ7Z3V4 1068 aa17.4■□□□□ 0.38
SERF1B-204ENST00000506542 SPEF2Q9C093 1822 aa17.4■□□□□ 0.38
SERF1B-204ENST00000506542 MYH3P11055 1940 aa17.4■□□□□ 0.38
SERF1B-204ENST00000506542 PPEF1O14829 653 aaPredicted RBP17.39■□□□□ 0.37
SERF1B-204ENST00000506542 CCT4P50991 539 aaKnown RBP17.39■□□□□ 0.37
SERF1B-204ENST00000506542 GCKRQ14397 625 aa17.39■□□□□ 0.37
SERF1B-204ENST00000506542 SEC31BQ9NQW1 1179 aa17.39■□□□□ 0.37
SERF1B-204ENST00000506542 SNED1Q8TER0 1413 aa17.39■□□□□ 0.37
SERF1B-204ENST00000506542 IGHDP01880 384 aa17.39■□□□□ 0.37
SERF1B-204ENST00000506542 BEND3Q5T5X7 828 aa17.39■□□□□ 0.37
SERF1B-204ENST00000506542 CELF1Q92879 486 aaKnown RBP17.39■□□□□ 0.37
SERF1B-204ENST00000506542 CRAMP1Q96RY5 1269 aa17.39■□□□□ 0.37
SERF1B-204ENST00000506542 ZNF277Q9NRM2 450 aaPredicted RBP17.39■□□□□ 0.37
SERF1B-204ENST00000506542 DICER1Q9UPY3 1922 aaKnown RBP17.38■□□□□ 0.37
SERF1B-204ENST00000506542 CCDC93Q567U6 631 aa17.38■□□□□ 0.37
SERF1B-204ENST00000506542 TAOK3Q9H2K8 898 aa17.38■□□□□ 0.37
SERF1B-204ENST00000506542 COL4A5P29400 1685 aa17.37■□□□□ 0.37
SERF1B-204ENST00000506542 LMNB1P20700 586 aa17.37■□□□□ 0.37
SERF1B-204ENST00000506542 SF3B3Q15393 1217 aaKnown RBP17.36■□□□□ 0.37
SERF1B-204ENST00000506542 DDX46Q7L014 1031 aaKnown RBP17.36■□□□□ 0.37
SERF1B-204ENST00000506542 LINS1Q8NG48 757 aa17.36■□□□□ 0.37
SERF1B-204ENST00000506542 H7C1W4 665 aa17.36■□□□□ 0.37
SERF1B-204ENST00000506542 CASP7P55210 303 aa17.36■□□□□ 0.37
SERF1B-204ENST00000506542 HDAC1Q13547 482 aaPredicted RBP17.36■□□□□ 0.37
SERF1B-204ENST00000506542 RWDD1Q9H446 243 aaPredicted RBP17.36■□□□□ 0.37
SERF1B-204ENST00000506542 GRAPQ13588 217 aa17.35■□□□□ 0.37
SERF1B-204ENST00000506542 GRAPLQ8TC17 118 aaPredicted RBP17.35■□□□□ 0.37
SERF1B-204ENST00000506542 PDE8AO60658 829 aa17.34■□□□□ 0.37
SERF1B-204ENST00000506542 CDHR2Q9BYE9 1310 aa17.34■□□□□ 0.37
SERF1B-204ENST00000506542 LRRC37AA6NMS7 1700 aa17.33■□□□□ 0.37
SERF1B-204ENST00000506542 CTSWP56202 376 aa17.33■□□□□ 0.37
SERF1B-204ENST00000506542 FKBP4Q02790 459 aaKnown RBP eCLIP17.33■□□□□ 0.37
SERF1B-204ENST00000506542 GREM2Q9H772 168 aa17.33■□□□□ 0.37
SERF1B-204ENST00000506542 NMRK2Q9NPI5 230 aa17.33■□□□□ 0.37
SERF1B-204ENST00000506542 ATP6V0A2Q9Y487 856 aa17.33■□□□□ 0.37
SERF1B-204ENST00000506542 EPHA10Q5JZY3 1008 aa17.32■□□□□ 0.36
SERF1B-204ENST00000506542 SOGA3Q5TF21 947 aa17.32■□□□□ 0.36
SERF1B-204ENST00000506542 TTLL11Q8NHH1 800 aa17.32■□□□□ 0.36
SERF1B-204ENST00000506542 MEIS3Q99687 375 aa17.32■□□□□ 0.36
SERF1B-204ENST00000506542 GPBP1L1Q9HC44 474 aaPredicted RBP17.32■□□□□ 0.36
SERF1B-204ENST00000506542 LTBP3Q9NS15 1303 aa17.32■□□□□ 0.36
SERF1B-204ENST00000506542 DUOX1Q9NRD9 1551 aa17.32■□□□□ 0.36
SERF1B-204ENST00000506542 GPR101Q96P66 508 aaPredicted RBP17.32■□□□□ 0.36
SERF1B-204ENST00000506542 C1orf115Q9H7X2 142 aa17.32■□□□□ 0.36
SERF1B-204ENST00000506542 RTKN2Q8IZC4 609 aa17.31■□□□□ 0.36
SERF1B-204ENST00000506542 SRCIN1Q9C0H9 1055 aa17.31■□□□□ 0.36
SERF1B-204ENST00000506542 WTIPA6NIX2 430 aaPredicted RBP17.3■□□□□ 0.36
SERF1B-204ENST00000506542 BBOX1O75936 387 aa17.3■□□□□ 0.36
SERF1B-204ENST00000506542 NBPF7P0C2Y1 421 aaPredicted RBP17.3■□□□□ 0.36
SERF1B-204ENST00000506542 FAM161AQ3B820 660 aa17.3■□□□□ 0.36
SERF1B-204ENST00000506542 CCDC152Q4G0S7 254 aa17.3■□□□□ 0.36
SERF1B-204ENST00000506542 LTBP1Q14766 1721 aa17.3■□□□□ 0.36
SERF1B-204ENST00000506542 GRM8O00222 908 aa17.29■□□□□ 0.36
SERF1B-204ENST00000506542 RPS8P62241 208 aaKnown RBP17.29■□□□□ 0.36
SERF1B-204ENST00000506542 SP8Q8IXZ3 490 aa17.29■□□□□ 0.36
SERF1B-204ENST00000506542 ZNF541Q9H0D2 1346 aa17.29■□□□□ 0.36
SERF1B-204ENST00000506542 GNAI3P08754 354 aa17.29■□□□□ 0.36
SERF1B-204ENST00000506542 IARSP41252 1262 aaKnown RBP17.29■□□□□ 0.36
SERF1B-204ENST00000506542 GPSM2P81274 684 aa17.29■□□□□ 0.36
SERF1B-204ENST00000506542 FOXO4P98177 505 aa17.29■□□□□ 0.36
SERF1B-204ENST00000506542 AOC3Q16853 763 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms