RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 KIAA2012Q0VF49 1180 aa27.35■■□□□ 1.97
SQSTM1-210ENST00000506042 LRP10Q7Z4F1 713 aa27.35■■□□□ 1.97
SQSTM1-210ENST00000506042 TRPM7Q96QT4 1865 aa27.34■■□□□ 1.97
SQSTM1-210ENST00000506042 ANXA1P04083 346 aa27.34■■□□□ 1.97
SQSTM1-210ENST00000506042 CALD1Q05682 793 aaKnown RBP27.34■■□□□ 1.97
SQSTM1-210ENST00000506042 PROSER3Q2NL68 480 aa27.34■■□□□ 1.97
SQSTM1-210ENST00000506042 PLBD2Q8NHP8 589 aa27.34■■□□□ 1.97
SQSTM1-210ENST00000506042 CHL1O00533 1208 aa27.33■■□□□ 1.97
SQSTM1-210ENST00000506042 HCLS1P14317 486 aaPredicted RBP27.33■■□□□ 1.97
SQSTM1-210ENST00000506042 C3orf67Q6ZVT6 689 aa27.33■■□□□ 1.97
SQSTM1-210ENST00000506042 ZC3H15Q8WU90 426 aaKnown RBP27.33■■□□□ 1.97
SQSTM1-210ENST00000506042 HYPKQ9NX55 129 aa27.33■■□□□ 1.97
SQSTM1-210ENST00000506042 H7C1D1 291 aa27.32■■□□□ 1.96
SQSTM1-210ENST00000506042 CXCL9Q07325 125 aa27.32■■□□□ 1.96
SQSTM1-210ENST00000506042 ANKRD13DQ6ZTN6 518 aa27.32■■□□□ 1.96
SQSTM1-210ENST00000506042 CAPNS2Q96L46 248 aa27.32■■□□□ 1.96
SQSTM1-210ENST00000506042 COL4A5P29400 1685 aa27.32■■□□□ 1.96
SQSTM1-210ENST00000506042 LAMB2P55268 1798 aa27.31■■□□□ 1.96
SQSTM1-210ENST00000506042 LBX1P52954 281 aa27.31■■□□□ 1.96
SQSTM1-210ENST00000506042 CHPF2Q9P2E5 772 aa27.31■■□□□ 1.96
SQSTM1-210ENST00000506042 PCNTO95613 3336 aa27.31■■□□□ 1.96
SQSTM1-210ENST00000506042 GMPSP49915 693 aaPredicted RBP27.3■■□□□ 1.96
SQSTM1-210ENST00000506042 CCDC146Q8IYE0 955 aa27.3■■□□□ 1.96
SQSTM1-210ENST00000506042 EYA3Q99504 573 aa27.3■■□□□ 1.96
SQSTM1-210ENST00000506042 LTBP1Q14766 1721 aa27.3■■□□□ 1.96
SQSTM1-210ENST00000506042 MAP2K2P36507 400 aa27.29■■□□□ 1.96
SQSTM1-210ENST00000506042 GRM1Q13255 1194 aa27.29■■□□□ 1.96
SQSTM1-210ENST00000506042 GPR101Q96P66 508 aaPredicted RBP27.29■■□□□ 1.96
SQSTM1-210ENST00000506042 TLL2Q9Y6L7 1015 aa27.29■■□□□ 1.96
SQSTM1-210ENST00000506042 CA12O43570 354 aa27.28■■□□□ 1.96
SQSTM1-210ENST00000506042 WASHC4Q2M389 1173 aa27.28■■□□□ 1.96
SQSTM1-210ENST00000506042 GOLGA2Q08379 1002 aa27.27■■□□□ 1.96
SQSTM1-210ENST00000506042 CDC37L1Q7L3B6 337 aa27.27■■□□□ 1.96
SQSTM1-210ENST00000506042 HHIPL1Q96JK4 782 aa27.27■■□□□ 1.96
SQSTM1-210ENST00000506042 CFAP44Q96MT7 982 aa27.27■■□□□ 1.96
SQSTM1-210ENST00000506042 G3V3G9 751 aa27.26■■□□□ 1.95
SQSTM1-210ENST00000506042 DDX10Q13206 875 aaKnown RBP27.26■■□□□ 1.95
SQSTM1-210ENST00000506042 DCAF8Q5TAQ9 597 aa27.26■■□□□ 1.95
SQSTM1-210ENST00000506042 NSFL1CQ9UNZ2 370 aaKnown RBP27.26■■□□□ 1.95
SQSTM1-210ENST00000506042 RAD17O75943 681 aa27.25■■□□□ 1.95
SQSTM1-210ENST00000506042 CELF2O95319 508 aaKnown RBP27.25■■□□□ 1.95
SQSTM1-210ENST00000506042 C6orf229H3BNL8 230 aa27.24■■□□□ 1.95
SQSTM1-210ENST00000506042 HSPA8P11142 646 aaKnown RBP27.24■■□□□ 1.95
SQSTM1-210ENST00000506042 SF3B3Q15393 1217 aaKnown RBP27.24■■□□□ 1.95
SQSTM1-210ENST00000506042 RIC3Q7Z5B4 369 aa27.24■■□□□ 1.95
SQSTM1-210ENST00000506042 CNOT7Q9UIV1 285 aaKnown RBP27.24■■□□□ 1.95
SQSTM1-210ENST00000506042 THSD7BQ9C0I4 1608 aa27.23■■□□□ 1.95
SQSTM1-210ENST00000506042 RPS12P25398 132 aaKnown RBP27.23■■□□□ 1.95
SQSTM1-210ENST00000506042 CYP4F22Q6NT55 531 aa27.23■■□□□ 1.95
SQSTM1-210ENST00000506042 DPF2Q92785 391 aa27.23■■□□□ 1.95
SQSTM1-210ENST00000506042 LRRC37AA6NMS7 1700 aa27.22■■□□□ 1.95
SQSTM1-210ENST00000506042 TRAF5O00463 557 aa27.22■■□□□ 1.95
SQSTM1-210ENST00000506042 FAM89AQ96GI7 184 aa27.22■■□□□ 1.95
SQSTM1-210ENST00000506042 ISCA1Q9BUE6 129 aa27.22■■□□□ 1.95
SQSTM1-210ENST00000506042 PGAP2Q9UHJ9 254 aa27.22■■□□□ 1.95
SQSTM1-210ENST00000506042 TRIM35Q9UPQ4 493 aa27.22■■□□□ 1.95
SQSTM1-210ENST00000506042 DDX60Q8IY21 1712 aaKnown RBP27.21■■□□□ 1.95
SQSTM1-210ENST00000506042 DDX58O95786 925 aaKnown RBP27.21■■□□□ 1.95
SQSTM1-210ENST00000506042 GNAI1P63096 354 aa27.21■■□□□ 1.95
SQSTM1-210ENST00000506042 TRIM28Q13263 835 aaKnown RBP27.21■■□□□ 1.95
SQSTM1-210ENST00000506042 DUSP27Q5VZP5 1158 aa27.21■■□□□ 1.95
SQSTM1-210ENST00000506042 CST9Q5W186 159 aa27.21■■□□□ 1.95
SQSTM1-210ENST00000506042 ZNF408Q9H9D4 720 aa27.21■■□□□ 1.95
SQSTM1-210ENST00000506042 SAPCD2Q86UD0 394 aa27.2■■□□□ 1.94
SQSTM1-210ENST00000506042 IRS4O14654 1257 aaPredicted RBP27.19■■□□□ 1.94
SQSTM1-210ENST00000506042 KRT24Q2M2I5 525 aa27.19■■□□□ 1.94
SQSTM1-210ENST00000506042 MICALL2Q8IY33 904 aa27.19■■□□□ 1.94
SQSTM1-210ENST00000506042 ZC3H12CQ9C0D7 883 aaKnown RBP27.19■■□□□ 1.94
SQSTM1-210ENST00000506042 ADAMTS8Q9UP79 889 aa27.19■■□□□ 1.94
SQSTM1-210ENST00000506042 ATP5J2-PTCD1G3V325 749 aa27.18■■□□□ 1.94
SQSTM1-210ENST00000506042 GLIS2Q9BZE0 524 aaPredicted RBP27.18■■□□□ 1.94
SQSTM1-210ENST00000506042 RPS8P62241 208 aaKnown RBP27.17■■□□□ 1.94
SQSTM1-210ENST00000506042 ZBTB38Q8NAP3 1195 aaPredicted RBP27.17■■□□□ 1.94
SQSTM1-210ENST00000506042 DCPSQ96C86 337 aaKnown RBP27.17■■□□□ 1.94
SQSTM1-210ENST00000506042 IFT57Q9NWB7 429 aa27.17■■□□□ 1.94
SQSTM1-210ENST00000506042 BRPF1P55201 1214 aaPredicted RBP27.16■■□□□ 1.94
SQSTM1-210ENST00000506042 NOGQ13253 232 aa27.16■■□□□ 1.94
SQSTM1-210ENST00000506042 CCDC152Q4G0S7 254 aa27.16■■□□□ 1.94
SQSTM1-210ENST00000506042 RIMBP2O15034 1052 aa27.15■■□□□ 1.94
SQSTM1-210ENST00000506042 ABHD8Q96I13 439 aa27.15■■□□□ 1.94
SQSTM1-210ENST00000506042 MBIPQ9NS73 344 aa27.15■■□□□ 1.94
SQSTM1-210ENST00000506042 ANKIB1Q9P2G1 1089 aa27.15■■□□□ 1.94
SQSTM1-210ENST00000506042 ECE2O60344 883 aa27.14■■□□□ 1.94
SQSTM1-210ENST00000506042 FMR1Q06787 632 aaKnown RBP eCLIP27.14■■□□□ 1.94
SQSTM1-210ENST00000506042 RTL5Q5HYW3 569 aaPredicted RBP27.14■■□□□ 1.94
SQSTM1-210ENST00000506042 SLC51AQ86UW1 340 aa27.14■■□□□ 1.94
SQSTM1-210ENST00000506042 C2orf69Q8N8R5 385 aa27.14■■□□□ 1.94
SQSTM1-210ENST00000506042 CCDC191Q8NCU4 936 aa27.14■■□□□ 1.94
SQSTM1-210ENST00000506042 CELF1Q92879 486 aaKnown RBP27.14■■□□□ 1.94
SQSTM1-210ENST00000506042 DBNDD1Q9H9R9 158 aa27.14■■□□□ 1.94
SQSTM1-210ENST00000506042 PSMD14O00487 310 aa27.13■■□□□ 1.93
SQSTM1-210ENST00000506042 CCDC30Q5VVM6 783 aa27.13■■□□□ 1.93
SQSTM1-210ENST00000506042 DUOX1Q9NRD9 1551 aa27.13■■□□□ 1.93
SQSTM1-210ENST00000506042 YDJCA8MPS7 323 aa27.12■■□□□ 1.93
SQSTM1-210ENST00000506042 KRT26Q7Z3Y9 468 aa27.12■■□□□ 1.93
SQSTM1-210ENST00000506042 TRPM4Q8TD43 1214 aa27.12■■□□□ 1.93
SQSTM1-210ENST00000506042 GGA1Q9UJY5 639 aa27.12■■□□□ 1.93
SQSTM1-210ENST00000506042 TAF1P21675 1872 aa27.11■■□□□ 1.93
SQSTM1-210ENST00000506042 HUNKP57058 714 aa27.11■■□□□ 1.93
SQSTM1-210ENST00000506042 GPSM2P81274 684 aa27.11■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms