RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 SUCLG2Q96I99 432 aa10.3□□□□□ -0.76
LIMCH1-206ENST00000505705 MEIS3Q99687 375 aa10.3□□□□□ -0.76
LIMCH1-206ENST00000505705 SYT17Q9BSW7 474 aa10.3□□□□□ -0.76
LIMCH1-206ENST00000505705 WWC3Q9ULE0 1092 aa10.3□□□□□ -0.76
LIMCH1-206ENST00000505705 GNAI2P04899 355 aa10.29□□□□□ -0.76
LIMCH1-206ENST00000505705 NPR1P16066 1061 aa10.29□□□□□ -0.76
LIMCH1-206ENST00000505705 ALDH1B1P30837 517 aa10.29□□□□□ -0.76
LIMCH1-206ENST00000505705 NLGN2Q8NFZ4 835 aa10.29□□□□□ -0.76
LIMCH1-206ENST00000505705 TMX4Q9H1E5 349 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-206ENST00000505705 C10orf71Q711Q0 1435 aa10.29□□□□□ -0.76
LIMCH1-206ENST00000505705 COL24A1Q17RW2 1714 aa10.29□□□□□ -0.76
LIMCH1-206ENST00000505705 ZBTB7BO15156 539 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-206ENST00000505705 SRGNP10124 158 aa10.28□□□□□ -0.76
LIMCH1-206ENST00000505705 CASP7P55210 303 aa10.28□□□□□ -0.76
LIMCH1-206ENST00000505705 CTSWP56202 376 aa10.28□□□□□ -0.76
LIMCH1-206ENST00000505705 IRX6P78412 446 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-206ENST00000505705 SF3B3Q15393 1217 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-206ENST00000505705 CCDC57Q2TAC2 916 aa10.28□□□□□ -0.76
LIMCH1-206ENST00000505705 TAF7LQ5H9L4 462 aa10.28□□□□□ -0.76
LIMCH1-206ENST00000505705 LMBR1LQ6UX01 489 aa10.28□□□□□ -0.76
LIMCH1-206ENST00000505705 C3orf67Q6ZVT6 689 aa10.28□□□□□ -0.76
LIMCH1-206ENST00000505705 CNKSR1Q969H4 720 aa10.28□□□□□ -0.76
LIMCH1-206ENST00000505705 PLA2G12BQ9BX93 195 aa10.28□□□□□ -0.76
LIMCH1-206ENST00000505705 BICC1Q9H694 974 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-206ENST00000505705 PIM2Q9P1W9 311 aa10.28□□□□□ -0.76
LIMCH1-206ENST00000505705 LRRFIP2Q9Y608 721 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-206ENST00000505705 UTYO14607 1347 aa10.28□□□□□ -0.76
LIMCH1-206ENST00000505705 NRXN2Q9P2S2 1712 aa10.27□□□□□ -0.76
LIMCH1-206ENST00000505705 ANKRD18BA2A2Z9 1011 aa10.27□□□□□ -0.77
LIMCH1-206ENST00000505705 IFIT5Q13325 482 aaKnown RBP10.27□□□□□ -0.77
LIMCH1-206ENST00000505705 STYK1Q6J9G0 422 aa10.27□□□□□ -0.77
LIMCH1-206ENST00000505705 POTEHQ6S545 545 aa10.27□□□□□ -0.77
LIMCH1-206ENST00000505705 TTLL6Q8N841 843 aa10.27□□□□□ -0.77
LIMCH1-206ENST00000505705 TTLL11Q8NHH1 800 aa10.27□□□□□ -0.77
LIMCH1-206ENST00000505705 CRBNQ96SW2 442 aa10.27□□□□□ -0.77
LIMCH1-206ENST00000505705 C1orf115Q9H7X2 142 aa10.27□□□□□ -0.77
LIMCH1-206ENST00000505705 BCS1LQ9Y276 419 aa10.27□□□□□ -0.77
LIMCH1-206ENST00000505705 LRP5O75197 1615 aa10.26□□□□□ -0.77
LIMCH1-206ENST00000505705 KLRG2A4D1S0 409 aaPredicted RBP10.26□□□□□ -0.77
LIMCH1-206ENST00000505705 NEFLP07196 543 aa10.26□□□□□ -0.77
LIMCH1-206ENST00000505705 ITGA6P23229 1130 aa10.26□□□□□ -0.77
LIMCH1-206ENST00000505705 IGHMBP2P38935 993 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-206ENST00000505705 FOXO4P98177 505 aa10.26□□□□□ -0.77
LIMCH1-206ENST00000505705 POLA2Q14181 598 aa10.26□□□□□ -0.77
LIMCH1-206ENST00000505705 CRY2Q49AN0 593 aa10.26□□□□□ -0.77
LIMCH1-206ENST00000505705 DALRD3Q5D0E6 543 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-206ENST00000505705 EPHA10Q5JZY3 1008 aa10.26□□□□□ -0.77
LIMCH1-206ENST00000505705 ANKRD18AQ8IVF6 992 aa10.26□□□□□ -0.77
LIMCH1-206ENST00000505705 CDC5LQ99459 802 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-206ENST00000505705 MPHOSPH8Q99549 860 aa10.26□□□□□ -0.77
LIMCH1-206ENST00000505705 GREM2Q9H772 168 aa10.26□□□□□ -0.77
LIMCH1-206ENST00000505705 RIC1Q4ADV7 1423 aa10.25□□□□□ -0.77
LIMCH1-206ENST00000505705 CSF1RP07333 972 aa10.25□□□□□ -0.77
LIMCH1-206ENST00000505705 KCNA3P22001 575 aa10.25□□□□□ -0.77
LIMCH1-206ENST00000505705 GRAPQ13588 217 aa10.25□□□□□ -0.77
LIMCH1-206ENST00000505705 GPR162Q16538 588 aa10.25□□□□□ -0.77
LIMCH1-206ENST00000505705 FAM161AQ3B820 660 aa10.25□□□□□ -0.77
LIMCH1-206ENST00000505705 GRAPLQ8TC17 118 aaPredicted RBP10.25□□□□□ -0.77
LIMCH1-206ENST00000505705 CRAMP1Q96RY5 1269 aa10.25□□□□□ -0.77
LIMCH1-206ENST00000505705 SEC31BQ9NQW1 1179 aa10.25□□□□□ -0.77
LIMCH1-206ENST00000505705 PPEF1O14829 653 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-206ENST00000505705 SRGAP3O43295 1099 aa10.24□□□□□ -0.77
LIMCH1-206ENST00000505705 BBOX1O75936 387 aa10.24□□□□□ -0.77
LIMCH1-206ENST00000505705 HOXA10P31260 410 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-206ENST00000505705 RPS8P62241 208 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-206ENST00000505705 PRPF40BQ6NWY9 871 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-206ENST00000505705 ANKRD44Q8N8A2 993 aa10.24□□□□□ -0.77
LIMCH1-206ENST00000505705 KAZALD1Q96I82 304 aa10.24□□□□□ -0.77
LIMCH1-206ENST00000505705 TNRC6CQ9HCJ0 1690 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-206ENST00000505705 C21orf2O43822 256 aa10.23□□□□□ -0.77
LIMCH1-206ENST00000505705 RABL6Q3YEC7 729 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-206ENST00000505705 LDHAL6AQ6ZMR3 332 aa10.23□□□□□ -0.77
LIMCH1-206ENST00000505705 EXOC6Q8TAG9 804 aa10.23□□□□□ -0.77
LIMCH1-206ENST00000505705 CELF1Q92879 486 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-206ENST00000505705 CNNM1Q9NRU3 951 aa10.23□□□□□ -0.77
LIMCH1-206ENST00000505705 ZBTB40Q9NUA8 1239 aa10.23□□□□□ -0.77
LIMCH1-206ENST00000505705 ZBTB12Q9Y330 459 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-206ENST00000505705 DDX60Q8IY21 1712 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-206ENST00000505705 N4BP2Q86UW6 1770 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-206ENST00000505705 ANKRD31Q8N7Z5 1873 aa10.23□□□□□ -0.77
LIMCH1-206ENST00000505705 KIF13BQ9NQT8 1826 aa10.22□□□□□ -0.77
LIMCH1-206ENST00000505705 HMMRO75330 724 aa10.22□□□□□ -0.77
LIMCH1-206ENST00000505705 ATP8B2P98198 1209 aa10.22□□□□□ -0.77
LIMCH1-206ENST00000505705 SOGA3Q5TF21 947 aa10.22□□□□□ -0.77
LIMCH1-206ENST00000505705 TMC4Q7Z404 712 aa10.22□□□□□ -0.77
LIMCH1-206ENST00000505705 RPAP2Q8IXW5 612 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-206ENST00000505705 ZNF594Q96JF6 807 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-206ENST00000505705 OS9Q13438 667 aaPredicted RBP10.21□□□□□ -0.77
LIMCH1-206ENST00000505705 CEP85Q6P2H3 762 aa10.21□□□□□ -0.77
LIMCH1-206ENST00000505705 ARHGAP27Q6ZUM4 889 aa10.21□□□□□ -0.77
LIMCH1-206ENST00000505705 KLHDC4Q8TBB5 520 aa10.21□□□□□ -0.77
LIMCH1-206ENST00000505705 SIL1Q9H173 461 aa10.21□□□□□ -0.77
LIMCH1-206ENST00000505705 BSDC1Q9NW68 430 aaPredicted RBP10.21□□□□□ -0.77
LIMCH1-206ENST00000505705 ANKIB1Q9P2G1 1089 aa10.21□□□□□ -0.77
LIMCH1-206ENST00000505705 LAMB2P55268 1798 aa10.21□□□□□ -0.78
LIMCH1-206ENST00000505705 PNMA6EA0A0J9YXQ4 647 aa10.2□□□□□ -0.78
LIMCH1-206ENST00000505705 GRIN3BO60391 1043 aa10.2□□□□□ -0.78
LIMCH1-206ENST00000505705 G3BP1Q13283 466 aaKnown RBP eCLIP10.2□□□□□ -0.78
LIMCH1-206ENST00000505705 AAMPQ13685 434 aa10.2□□□□□ -0.78
LIMCH1-206ENST00000505705 CCDC93Q567U6 631 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms