RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 CCDC191Q8NCU4 936 aa14.37□□□□□ -0.11
NUP54-202ENST00000502850 TEX13AQ9BXU3 409 aaPredicted RBP14.37□□□□□ -0.11
NUP54-202ENST00000502850 ZSWIM6Q9HCJ5 1215 aa14.37□□□□□ -0.11
NUP54-202ENST00000502850 GPR108Q9NPR9 543 aa14.37□□□□□ -0.11
NUP54-202ENST00000502850 TOGARAM1Q9Y4F4 1720 aa14.36□□□□□ -0.11
NUP54-202ENST00000502850 H7C1W4 665 aa14.36□□□□□ -0.11
NUP54-202ENST00000502850 PRPF40AO75400 957 aaKnown RBP14.36□□□□□ -0.11
NUP54-202ENST00000502850 CASP7P55210 303 aa14.36□□□□□ -0.11
NUP54-202ENST00000502850 NMIQ13287 307 aaPredicted RBP14.36□□□□□ -0.11
NUP54-202ENST00000502850 NECTIN1Q15223 517 aa14.36□□□□□ -0.11
NUP54-202ENST00000502850 EPHA10Q5JZY3 1008 aa14.36□□□□□ -0.11
NUP54-202ENST00000502850 PRPF40BQ6NWY9 871 aaKnown RBP14.36□□□□□ -0.11
NUP54-202ENST00000502850 NOL8Q76FK4 1167 aaKnown RBP14.36□□□□□ -0.11
NUP54-202ENST00000502850 RASEFQ8IZ41 740 aa14.36□□□□□ -0.11
NUP54-202ENST00000502850 MAP4K1Q92918 833 aa14.36□□□□□ -0.11
NUP54-202ENST00000502850 ARXQ96QS3 562 aa14.36□□□□□ -0.11
NUP54-202ENST00000502850 PDRG1Q9NUG6 133 aa14.36□□□□□ -0.11
NUP54-202ENST00000502850 THSD7AQ9UPZ6 1657 aa14.36□□□□□ -0.11
NUP54-202ENST00000502850 RPAP1Q9BWH6 1393 aaPredicted RBP14.35□□□□□ -0.11
NUP54-202ENST00000502850 KRT32Q14532 448 aa14.35□□□□□ -0.11
NUP54-202ENST00000502850 CSPP1Q1MSJ5 1256 aa14.35□□□□□ -0.11
NUP54-202ENST00000502850 CAVIN1Q6NZI2 390 aaKnown RBP14.35□□□□□ -0.11
NUP54-202ENST00000502850 RUFY3Q7L099 469 aa14.35□□□□□ -0.11
NUP54-202ENST00000502850 DEFB132Q7Z7B7 95 aa14.35□□□□□ -0.11
NUP54-202ENST00000502850 KLHL34Q8N239 644 aa14.35□□□□□ -0.11
NUP54-202ENST00000502850 JAKMIP1Q96N16 626 aaKnown RBP14.35□□□□□ -0.11
NUP54-202ENST00000502850 BOLA2Q9H3K6 86 aa14.35□□□□□ -0.11
NUP54-202ENST00000502850 ATG3Q9NT62 314 aa14.35□□□□□ -0.11
NUP54-202ENST00000502850 SMC3Q9UQE7 1217 aa14.35□□□□□ -0.11
NUP54-202ENST00000502850 RBM8AQ9Y5S9 174 aaKnown RBP14.35□□□□□ -0.11
NUP54-202ENST00000502850 PHF14O94880 888 aa14.34□□□□□ -0.11
NUP54-202ENST00000502850 PTH1RQ03431 593 aa14.34□□□□□ -0.11
NUP54-202ENST00000502850 CCDC173Q0VFZ6 552 aa14.34□□□□□ -0.11
NUP54-202ENST00000502850 ZSCAN23Q3MJ62 389 aa14.34□□□□□ -0.11
NUP54-202ENST00000502850 CREB3L3Q68CJ9 461 aa14.34□□□□□ -0.11
NUP54-202ENST00000502850 VSIG10Q8N0Z9 540 aa14.34□□□□□ -0.11
NUP54-202ENST00000502850 ALDH8A1Q9H2A2 487 aaPredicted RBP14.34□□□□□ -0.11
NUP54-202ENST00000502850 NBPF26B4DH59 902 aa14.33□□□□□ -0.11
NUP54-202ENST00000502850 IL15P40933 162 aaPredicted RBP14.33□□□□□ -0.11
NUP54-202ENST00000502850 FAM182BQ5T319 152 aa14.33□□□□□ -0.11
NUP54-202ENST00000502850 NBPF14Q5TI25 921 aa14.33□□□□□ -0.11
NUP54-202ENST00000502850 NBPF10Q6P3W6 841 aaKnown RBP14.33□□□□□ -0.11
NUP54-202ENST00000502850 NBPF15Q8N660 670 aa14.33□□□□□ -0.11
NUP54-202ENST00000502850 TLR7Q9NYK1 1049 aaKnown RBP14.33□□□□□ -0.11
NUP54-202ENST00000502850 FBXO3Q9UK99 471 aa14.33□□□□□ -0.11
NUP54-202ENST00000502850 ATP5J2-PTCD1G3V325 749 aa14.33□□□□□ -0.12
NUP54-202ENST00000502850 PTCD1O75127 700 aaKnown RBP14.33□□□□□ -0.12
NUP54-202ENST00000502850 CIAO1O76071 339 aa14.33□□□□□ -0.12
NUP54-202ENST00000502850 NASPP49321 788 aaPredicted RBP14.33□□□□□ -0.12
NUP54-202ENST00000502850 TFCP2Q12800 502 aa14.33□□□□□ -0.12
NUP54-202ENST00000502850 TSGA10IPQ3SY00 556 aa14.33□□□□□ -0.12
NUP54-202ENST00000502850 BARGINQ6ZT62 677 aa14.33□□□□□ -0.12
NUP54-202ENST00000502850 TMEM87AQ8NBN3 555 aa14.33□□□□□ -0.12
NUP54-202ENST00000502850 TRIM44Q96DX7 344 aaPredicted RBP14.33□□□□□ -0.12
NUP54-202ENST00000502850 HAUS7Q99871 368 aa14.33□□□□□ -0.12
NUP54-202ENST00000502850 PANK2Q9BZ23 570 aa14.33□□□□□ -0.12
NUP54-202ENST00000502850 TMOD3Q9NYL9 352 aa14.33□□□□□ -0.12
NUP54-202ENST00000502850 DBNLQ9UJU6 430 aaKnown RBP14.33□□□□□ -0.12
NUP54-202ENST00000502850 SLC27A2O14975 620 aa14.32□□□□□ -0.12
NUP54-202ENST00000502850 ZSCAN22P10073 491 aaPredicted RBP14.32□□□□□ -0.12
NUP54-202ENST00000502850 BLOC1S2Q6QNY1 142 aa14.32□□□□□ -0.12
NUP54-202ENST00000502850 LMBR1LQ6UX01 489 aa14.32□□□□□ -0.12
NUP54-202ENST00000502850 GAS2L3Q86XJ1 694 aa14.32□□□□□ -0.12
NUP54-202ENST00000502850 KLHDC4Q8TBB5 520 aa14.32□□□□□ -0.12
NUP54-202ENST00000502850 FAM227BQ96M60 508 aa14.32□□□□□ -0.12
NUP54-202ENST00000502850 PALLDQ8WX93 1383 aa14.32□□□□□ -0.12
NUP54-202ENST00000502850 WNK3Q9BYP7 1800 aa14.32□□□□□ -0.12
NUP54-202ENST00000502850 A0A0D9SFI3 127 aa14.31□□□□□ -0.12
NUP54-202ENST00000502850 STX6O43752 255 aa14.31□□□□□ -0.12
NUP54-202ENST00000502850 BAG6P46379 1132 aa14.31□□□□□ -0.12
NUP54-202ENST00000502850 PIP4K2AP48426 406 aaPredicted RBP14.31□□□□□ -0.12
NUP54-202ENST00000502850 FOXO4P98177 505 aa14.31□□□□□ -0.12
NUP54-202ENST00000502850 LRRFIP1Q32MZ4 808 aaKnown RBP14.31□□□□□ -0.12
NUP54-202ENST00000502850 GPT2Q8TD30 523 aa14.31□□□□□ -0.12
NUP54-202ENST00000502850 RTN4Q9NQC3 1192 aaKnown RBP14.31□□□□□ -0.12
NUP54-202ENST00000502850 U3KPZ7 1027 aaPredicted RBP14.31□□□□□ -0.12
NUP54-202ENST00000502850 SH3TC1Q8TE82 1336 aa14.31□□□□□ -0.12
NUP54-202ENST00000502850 ZNF609O15014 1411 aa14.31□□□□□ -0.12
NUP54-202ENST00000502850 ITGB4P16144 1822 aa14.31□□□□□ -0.12
NUP54-202ENST00000502850 ANKRD36CQ5JPF3 1778 aa14.3□□□□□ -0.12
NUP54-202ENST00000502850 PDCP20941 246 aa14.3□□□□□ -0.12
NUP54-202ENST00000502850 TRIM28Q13263 835 aaKnown RBP14.3□□□□□ -0.12
NUP54-202ENST00000502850 KIF6Q6ZMV9 814 aa14.3□□□□□ -0.12
NUP54-202ENST00000502850 DDX54Q8TDD1 881 aaKnown RBP14.3□□□□□ -0.12
NUP54-202ENST00000502850 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.3□□□□□ -0.12
NUP54-202ENST00000502850 THRAP3Q9Y2W1 955 aaKnown RBP14.3□□□□□ -0.12
NUP54-202ENST00000502850 CHMP3Q9Y3E7 222 aa14.3□□□□□ -0.12
NUP54-202ENST00000502850 USPL1Q5W0Q7 1092 aa14.3□□□□□ -0.12
NUP54-202ENST00000502850 LRSAM1Q6UWE0 723 aa14.3□□□□□ -0.12
NUP54-202ENST00000502850 FAM196AQ6ZSG2 479 aa14.3□□□□□ -0.12
NUP54-202ENST00000502850 TTLL7Q6ZT98 887 aa14.3□□□□□ -0.12
NUP54-202ENST00000502850 EYA2O00167 538 aa14.29□□□□□ -0.12
NUP54-202ENST00000502850 STARD3NLO95772 234 aa14.29□□□□□ -0.12
NUP54-202ENST00000502850 RPS6KB1P23443 525 aa14.29□□□□□ -0.12
NUP54-202ENST00000502850 MCMDC2Q4G0Z9 681 aa14.29□□□□□ -0.12
NUP54-202ENST00000502850 KBTBD3Q8NAB2 608 aa14.29□□□□□ -0.12
NUP54-202ENST00000502850 PPP1R9BQ96SB3 815 aa14.29□□□□□ -0.12
NUP54-202ENST00000502850 ISCA1Q9BUE6 129 aa14.29□□□□□ -0.12
NUP54-202ENST00000502850 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.29□□□□□ -0.12
NUP54-202ENST00000502850 ABCC12Q96J65 1359 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms