RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 TEAD4Q15561 434 aa6.73□□□□□ -1.33
USP54-217ENST00000498213 BTBD6Q96KE9 485 aa6.73□□□□□ -1.33
USP54-217ENST00000498213 HINFPQ9BQA5 517 aa6.73□□□□□ -1.33
USP54-217ENST00000498213 TSPAN10Q9H1Z9 355 aaPredicted RBP6.73□□□□□ -1.33
USP54-217ENST00000498213 NDFIP2Q9NV92 336 aa6.73□□□□□ -1.33
USP54-217ENST00000498213 PCDHGC4Q9Y5F7 938 aa6.73□□□□□ -1.33
USP54-217ENST00000498213 KIF27Q86VH2 1401 aa6.73□□□□□ -1.33
USP54-217ENST00000498213 DCDC2BA2VCK2 349 aa6.72□□□□□ -1.33
USP54-217ENST00000498213 USP17L15C9J2P7 530 aa6.72□□□□□ -1.33
USP54-217ENST00000498213 USP17L10C9JJH3 530 aa6.72□□□□□ -1.33
USP54-217ENST00000498213 USP17L13C9JLJ4 530 aa6.72□□□□□ -1.33
USP54-217ENST00000498213 USP17L12C9JPN9 530 aa6.72□□□□□ -1.33
USP54-217ENST00000498213 USP17L11C9JVI0 530 aa6.72□□□□□ -1.33
USP54-217ENST00000498213 USP17L21D6R901 530 aa6.72□□□□□ -1.33
USP54-217ENST00000498213 USP17L18D6R9N7 530 aa6.72□□□□□ -1.33
USP54-217ENST00000498213 USP17L22D6RA61 530 aa6.72□□□□□ -1.33
USP54-217ENST00000498213 USP17L17D6RBQ6 530 aa6.72□□□□□ -1.33
USP54-217ENST00000498213 USP17L19D6RCP7 530 aa6.72□□□□□ -1.33
USP54-217ENST00000498213 USP17L20D6RJB6 530 aa6.72□□□□□ -1.33
USP54-217ENST00000498213 KHNYNO15037 678 aaKnown RBP6.72□□□□□ -1.33
USP54-217ENST00000498213 EPXP11678 715 aa6.72□□□□□ -1.33
USP54-217ENST00000498213 TXLNAP40222 546 aa6.72□□□□□ -1.33
USP54-217ENST00000498213 USP17L24Q0WX57 530 aa6.72□□□□□ -1.33
USP54-217ENST00000498213 Q8N3U1 123 aa6.72□□□□□ -1.33
USP54-217ENST00000498213 RHPN1Q8TCX5 695 aa6.72□□□□□ -1.33
USP54-217ENST00000498213 ZCCHC2Q9C0B9 1178 aaKnown RBP6.72□□□□□ -1.33
USP54-217ENST00000498213 ZMYND15Q9H091 742 aa6.72□□□□□ -1.33
USP54-217ENST00000498213 SCAPERQ9BY12 1400 aa6.72□□□□□ -1.33
USP54-217ENST00000498213 C3P01024 1663 aa6.71□□□□□ -1.33
USP54-217ENST00000498213 SETBP1Q9Y6X0 1596 aa6.71□□□□□ -1.34
USP54-217ENST00000498213 FAM196BA6NMK8 535 aa6.71□□□□□ -1.34
USP54-217ENST00000498213 C1QTNF9BB2RNN3 333 aa6.71□□□□□ -1.34
USP54-217ENST00000498213 ARAFP10398 606 aa6.71□□□□□ -1.34
USP54-217ENST00000498213 RFX1P22670 979 aa6.71□□□□□ -1.34
USP54-217ENST00000498213 DPYDQ12882 1025 aa6.71□□□□□ -1.34
USP54-217ENST00000498213 CRTC2Q53ET0 693 aaPredicted RBP6.71□□□□□ -1.34
USP54-217ENST00000498213 ZNF295-AS1Q8N0V1 137 aa6.71□□□□□ -1.34
USP54-217ENST00000498213 ZDHHC1Q8WTX9 485 aa6.71□□□□□ -1.34
USP54-217ENST00000498213 ZIC5Q96T25 663 aa6.71□□□□□ -1.34
USP54-217ENST00000498213 TCOF1Q13428 1488 aaKnown RBP6.71□□□□□ -1.34
USP54-217ENST00000498213 RAPGEF2Q9Y4G8 1499 aa6.71□□□□□ -1.34
USP54-217ENST00000498213 NEURL1BA8MQ27 555 aa6.7□□□□□ -1.34
USP54-217ENST00000498213 RXRBP28702 533 aa6.7□□□□□ -1.34
USP54-217ENST00000498213 PTK7Q13308 1070 aa6.7□□□□□ -1.34
USP54-217ENST00000498213 KANK4Q5T7N3 995 aaPredicted RBP6.7□□□□□ -1.34
USP54-217ENST00000498213 ANKMY2Q8IV38 441 aa6.7□□□□□ -1.34
USP54-217ENST00000498213 SCG3Q8WXD2 468 aaKnown RBP6.7□□□□□ -1.34
USP54-217ENST00000498213 NOP53Q9NZM5 478 aaKnown RBP6.7□□□□□ -1.34
USP54-217ENST00000498213 GPC6Q9Y625 555 aaPredicted RBP6.7□□□□□ -1.34
USP54-217ENST00000498213 PLA2R1Q13018 1463 aa6.69□□□□□ -1.34
USP54-217ENST00000498213 EML1O00423 815 aa6.69□□□□□ -1.34
USP54-217ENST00000498213 CFAP70Q5T0N1 1121 aa6.69□□□□□ -1.34
USP54-217ENST00000498213 LRRC69Q6ZNQ3 347 aa6.69□□□□□ -1.34
USP54-217ENST00000498213 CD163Q86VB7 1156 aa6.69□□□□□ -1.34
USP54-217ENST00000498213 CCDC97Q96F63 343 aaPredicted RBP6.69□□□□□ -1.34
USP54-217ENST00000498213 PSMG3-AS1Q96PY0 264 aa6.69□□□□□ -1.34
USP54-217ENST00000498213 HCN4Q9Y3Q4 1203 aa6.69□□□□□ -1.34
USP54-217ENST00000498213 FAM157BP0CG42 384 aa6.68□□□□□ -1.34
USP54-217ENST00000498213 MAPTP10636 758 aaKnown RBP6.68□□□□□ -1.34
USP54-217ENST00000498213 DGKGP49619 791 aa6.68□□□□□ -1.34
USP54-217ENST00000498213 CDCA8Q53HL2 280 aa6.68□□□□□ -1.34
USP54-217ENST00000498213 SH3PXD2AQ5TCZ1 1133 aa6.68□□□□□ -1.34
USP54-217ENST00000498213 MEX3CQ5U5Q3 659 aaKnown RBP6.68□□□□□ -1.34
USP54-217ENST00000498213 FAM9AQ8IZU1 332 aaPredicted RBP6.68□□□□□ -1.34
USP54-217ENST00000498213 AFAP1Q8N556 730 aa6.68□□□□□ -1.34
USP54-217ENST00000498213 GAS2L2Q8NHY3 880 aa6.68□□□□□ -1.34
USP54-217ENST00000498213 VTI1AQ96AJ9 217 aa6.68□□□□□ -1.34
USP54-217ENST00000498213 NGLY1Q96IV0 654 aa6.68□□□□□ -1.34
USP54-217ENST00000498213 PHACTR1Q9C0D0 580 aa6.68□□□□□ -1.34
USP54-217ENST00000498213 ATAD2Q6PL18 1390 aa6.68□□□□□ -1.34
USP54-217ENST00000498213 LRRC7Q96NW7 1537 aa6.67□□□□□ -1.34
USP54-217ENST00000498213 CD33P20138 364 aa6.67□□□□□ -1.34
USP54-217ENST00000498213 CHRNA4P43681 627 aa6.67□□□□□ -1.34
USP54-217ENST00000498213 SAMD5Q5TGI4 173 aa6.67□□□□□ -1.34
USP54-217ENST00000498213 C1orf53Q5VUE5 145 aa6.67□□□□□ -1.34
USP54-217ENST00000498213 ZNF772Q68DY9 489 aaPredicted RBP6.67□□□□□ -1.34
USP54-217ENST00000498213 CHSY3Q70JA7 882 aa6.67□□□□□ -1.34
USP54-217ENST00000498213 FAM200AQ8TCP9 573 aa6.67□□□□□ -1.34
USP54-217ENST00000498213 ANKIB1Q9P2G1 1089 aa6.67□□□□□ -1.34
USP54-217ENST00000498213 PRR12Q9ULL5 1215 aa6.67□□□□□ -1.34
USP54-217ENST00000498213 ZMYM3Q14202 1370 aa6.67□□□□□ -1.34
USP54-217ENST00000498213 NPATQ14207 1427 aa6.67□□□□□ -1.34
USP54-217ENST00000498213 PLEKHD1A6NEE1 506 aa6.66□□□□□ -1.34
USP54-217ENST00000498213 LGR5O75473 907 aa6.66□□□□□ -1.34
USP54-217ENST00000498213 DKK1O94907 266 aa6.66□□□□□ -1.34
USP54-217ENST00000498213 YY1P25490 414 aa6.66□□□□□ -1.34
USP54-217ENST00000498213 ADH6P28332 368 aa6.66□□□□□ -1.34
USP54-217ENST00000498213 HIRAP54198 1017 aaPredicted RBP6.66□□□□□ -1.34
USP54-217ENST00000498213 TNP2Q05952 138 aa6.66□□□□□ -1.34
USP54-217ENST00000498213 HIF1AQ16665 826 aa6.66□□□□□ -1.34
USP54-217ENST00000498213 MARK1Q9P0L2 795 aa6.66□□□□□ -1.34
USP54-217ENST00000498213 LAMC2Q13753 1193 aa6.65□□□□□ -1.34
USP54-217ENST00000498213 ALDH16A1Q8IZ83 802 aa6.65□□□□□ -1.34
USP54-217ENST00000498213 CEP63Q96MT8 703 aa6.65□□□□□ -1.34
USP54-217ENST00000498213 KLF15Q9UIH9 416 aa6.65□□□□□ -1.34
USP54-217ENST00000498213 NOVA2Q9UNW9 492 aaKnown RBP6.65□□□□□ -1.34
USP54-217ENST00000498213 C21orf2O43822 256 aa6.64□□□□□ -1.35
USP54-217ENST00000498213 IGFBP4P22692 258 aa6.64□□□□□ -1.35
USP54-217ENST00000498213 NEUROD1Q13562 356 aa6.64□□□□□ -1.35
USP54-217ENST00000498213 DOC2BQ14184 412 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms