RNA–Protein interactions for RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 SHISA2Q6UWI4 295 aa8.87□□□□□ -0.99
SMC4-227ENST00000497984 LENG1Q96BZ8 264 aaPredicted RBP8.87□□□□□ -0.99
SMC4-227ENST00000497984 LPIN3Q9BQK8 851 aa8.87□□□□□ -0.99
SMC4-227ENST00000497984 RGS9O75916 674 aaPredicted RBP8.86□□□□□ -0.99
SMC4-227ENST00000497984 MICAL2O94851 1124 aa8.86□□□□□ -0.99
SMC4-227ENST00000497984 ARSDP51689 593 aa8.86□□□□□ -0.99
SMC4-227ENST00000497984 RAC1P63000 192 aa8.86□□□□□ -0.99
SMC4-227ENST00000497984 GRIK5Q16478 980 aa8.86□□□□□ -0.99
SMC4-227ENST00000497984 FAM35AQ86V20 835 aa8.86□□□□□ -0.99
SMC4-227ENST00000497984 FMR1NBQ8N0W7 255 aaPredicted RBP8.86□□□□□ -0.99
SMC4-227ENST00000497984 IFT43Q96FT9 208 aa8.86□□□□□ -0.99
SMC4-227ENST00000497984 C11orf16Q9NQ32 467 aa8.86□□□□□ -0.99
SMC4-227ENST00000497984 TARSP26639 723 aaKnown RBP8.85□□□□□ -0.99
SMC4-227ENST00000497984 C11orf91Q3C1V1 193 aa8.85□□□□□ -0.99
SMC4-227ENST00000497984 KRT25Q7Z3Z0 450 aa8.85□□□□□ -0.99
SMC4-227ENST00000497984 DMRTC2Q8IXT2 367 aaPredicted RBP8.85□□□□□ -0.99
SMC4-227ENST00000497984 TRPM4Q8TD43 1214 aa8.85□□□□□ -0.99
SMC4-227ENST00000497984 FRRS1LQ9P0K9 344 aa8.85□□□□□ -0.99
SMC4-227ENST00000497984 LRFN2Q9ULH4 789 aa8.85□□□□□ -0.99
SMC4-227ENST00000497984 OPLAHO14841 1288 aa8.84□□□□□ -0.99
SMC4-227ENST00000497984 CPB1P15086 417 aa8.84□□□□□ -0.99
SMC4-227ENST00000497984 PLAURQ03405 335 aa8.84□□□□□ -0.99
SMC4-227ENST00000497984 PCSK7Q16549 785 aa8.84□□□□□ -0.99
SMC4-227ENST00000497984 PERM1Q5SV97 790 aa8.84□□□□□ -0.99
SMC4-227ENST00000497984 DHX32Q7L7V1 743 aaKnown RBP8.84□□□□□ -0.99
SMC4-227ENST00000497984 TXNRD3Q86VQ6 643 aa8.84□□□□□ -0.99
SMC4-227ENST00000497984 SASH3O75995 380 aa8.83□□□□□ -1
SMC4-227ENST00000497984 GPLD1P80108 840 aa8.83□□□□□ -1
SMC4-227ENST00000497984 MSL1Q68DK7 614 aa8.83□□□□□ -1
SMC4-227ENST00000497984 FAM200AQ8TCP9 573 aa8.83□□□□□ -1
SMC4-227ENST00000497984 VTI1AQ96AJ9 217 aa8.83□□□□□ -1
SMC4-227ENST00000497984 RARAP10276 462 aa8.82□□□□□ -1
SMC4-227ENST00000497984 NRG1Q02297 640 aaPredicted RBP8.82□□□□□ -1
SMC4-227ENST00000497984 CDCA8Q53HL2 280 aa8.82□□□□□ -1
SMC4-227ENST00000497984 PRSS36Q5K4E3 855 aa8.82□□□□□ -1
SMC4-227ENST00000497984 SSBP4Q9BWG4 385 aaPredicted RBP8.82□□□□□ -1
SMC4-227ENST00000497984 ZNF777Q9ULD5 760 aaPredicted RBP8.82□□□□□ -1
SMC4-227ENST00000497984 USP20Q9Y2K6 914 aa8.82□□□□□ -1
SMC4-227ENST00000497984 H2AFB1P0C5Y9 115 aa8.81□□□□□ -1
SMC4-227ENST00000497984 H2AFB2P0C5Z0 115 aa8.81□□□□□ -1
SMC4-227ENST00000497984 MLLT1Q03111 559 aaPredicted RBP8.81□□□□□ -1
SMC4-227ENST00000497984 FKBP5Q13451 457 aaPredicted RBP8.81□□□□□ -1
SMC4-227ENST00000497984 TTC9Q92623 222 aa8.81□□□□□ -1
SMC4-227ENST00000497984 RTCBQ9Y3I0 505 aaKnown RBP8.81□□□□□ -1
SMC4-227ENST00000497984 EGFRP00533 1210 aa8.8□□□□□ -1
SMC4-227ENST00000497984 COX20Q5RI15 118 aa8.8□□□□□ -1
SMC4-227ENST00000497984 DTWD1Q8N5C7 304 aa8.8□□□□□ -1
SMC4-227ENST00000497984 NOVA2Q9UNW9 492 aaKnown RBP8.8□□□□□ -1
SMC4-227ENST00000497984 NRLP54845 237 aa8.79□□□□□ -1
SMC4-227ENST00000497984 ELMSAN1Q6PJG2 1045 aa8.79□□□□□ -1
SMC4-227ENST00000497984 FBXO11Q86XK2 927 aa8.79□□□□□ -1
SMC4-227ENST00000497984 TREML1Q86YW5 311 aa8.79□□□□□ -1
SMC4-227ENST00000497984 RFX1P22670 979 aa8.78□□□□□ -1
SMC4-227ENST00000497984 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.78□□□□□ -12e-129■■■■■ 884.5
SMC4-227ENST00000497984 TLR7Q9NYK1 1049 aaKnown RBP8.78□□□□□ -1
SMC4-227ENST00000497984 ZMIZ1Q9ULJ6 1067 aa8.78□□□□□ -1
SMC4-227ENST00000497984 KCNMB2Q9Y691 235 aa8.78□□□□□ -1
SMC4-227ENST00000497984 XYLBO75191 536 aa8.77□□□□□ -1.01
SMC4-227ENST00000497984 OCLNQ16625 522 aa8.77□□□□□ -1.01
SMC4-227ENST00000497984 SWI5Q1ZZU3 235 aa8.77□□□□□ -1.01
SMC4-227ENST00000497984 HFE2Q6ZVN8 426 aa8.77□□□□□ -1.01
SMC4-227ENST00000497984 WFDC8Q8IUA0 241 aa8.77□□□□□ -1.01
SMC4-227ENST00000497984 PRIMPOLQ96LW4 560 aa8.77□□□□□ -1.01
SMC4-227ENST00000497984 SMG9Q9H0W8 520 aaKnown RBP8.77□□□□□ -1.01
SMC4-227ENST00000497984 USP21Q9UK80 565 aa8.77□□□□□ -1.01
SMC4-227ENST00000497984 ACIN1Q9UKV3 1341 aaKnown RBP8.77□□□□□ -1.01
SMC4-227ENST00000497984 BTBD11A6QL63 1104 aa8.76□□□□□ -1.01
SMC4-227ENST00000497984 DEAF1O75398 565 aaPredicted RBP8.76□□□□□ -1.01
SMC4-227ENST00000497984 FAM69CQ0P6D2 419 aa8.76□□□□□ -1.01
SMC4-227ENST00000497984 KRTAP19-1Q8IUB9 90 aa8.76□□□□□ -1.01
SMC4-227ENST00000497984 RGL4Q8IZJ4 473 aa8.76□□□□□ -1.01
SMC4-227ENST00000497984 CMTR1Q8N1G2 835 aaKnown RBP8.76□□□□□ -1.01
SMC4-227ENST00000497984 TP53INP1Q96A56 240 aa8.76□□□□□ -1.01
SMC4-227ENST00000497984 SCO2A0A1W2PP80 73 aa8.75□□□□□ -1.01
SMC4-227ENST00000497984 PRMT3O60678 531 aa8.75□□□□□ -1.01
SMC4-227ENST00000497984 ELOAQ14241 798 aaKnown RBP8.75□□□□□ -1.01
SMC4-227ENST00000497984 ETFBKMTQ8IXQ9 262 aa8.75□□□□□ -1.01
SMC4-227ENST00000497984 WFDC12Q8WWY7 111 aa8.75□□□□□ -1.01
SMC4-227ENST00000497984 SAP130Q9H0E3 1048 aa8.75□□□□□ -1.01
SMC4-227ENST00000497984 MMP20O60882 483 aa8.74□□□□□ -1.01
SMC4-227ENST00000497984 HOXD8P13378 290 aaPredicted RBP8.74□□□□□ -1.01
SMC4-227ENST00000497984 EIF2AK2P19525 551 aaKnown RBP8.74□□□□□ -1.01
SMC4-227ENST00000497984 ARID4AP29374 1257 aaPredicted RBP8.74□□□□□ -1.01
SMC4-227ENST00000497984 SRPK2P78362 688 aaKnown RBP8.74□□□□□ -1.01
SMC4-227ENST00000497984 FAM26DQ5JW98 314 aa8.74□□□□□ -1.01
SMC4-227ENST00000497984 ARTNQ5T4W7 220 aa8.74□□□□□ -1.01
SMC4-227ENST00000497984 J3QW42 95 aa8.73□□□□□ -1.01
SMC4-227ENST00000497984 NOS3P29474 1203 aa8.73□□□□□ -1.01
SMC4-227ENST00000497984 IGF2-ASQ6U949 168 aa8.73□□□□□ -1.01
SMC4-227ENST00000497984 STK32AQ8WU08 396 aa8.73□□□□□ -1.01
SMC4-227ENST00000497984 LOC102724428A0A0B4J2F2 783 aa8.72□□□□□ -1.01
SMC4-227ENST00000497984 DLL1O00548 723 aa8.72□□□□□ -1.01
SMC4-227ENST00000497984 SOX18P35713 384 aa8.72□□□□□ -1.01
SMC4-227ENST00000497984 IREB2P48200 963 aaKnown RBP8.72□□□□□ -1.01
SMC4-227ENST00000497984 SIK1P57059 783 aa8.72□□□□□ -1.01
SMC4-227ENST00000497984 TRIP4Q15650 581 aaPredicted RBP8.72□□□□□ -1.01
SMC4-227ENST00000497984 PLD4Q96BZ4 506 aa8.72□□□□□ -1.01
SMC4-227ENST00000497984 ZFP64Q9NPA5 681 aa8.72□□□□□ -1.01
SMC4-227ENST00000497984 TNFRSF10BO14763 440 aa8.71□□□□□ -1.02
SMC4-227ENST00000497984 PSAPP07602 524 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms