RNA–Protein interactions for RNA: ENST00000496024.1

CALD1-223, Transcript of caldesmon 1, human

TSL 4

Gene CALD1, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALD1-223	ENST00000496024	SOGA3	Q5TF21	947 aa		12.45	□□□□□ -0.42
CALD1-223	ENST00000496024	FRAT1	Q92837	279 aa	Predicted RBP	12.45	□□□□□ -0.42
CALD1-223	ENST00000496024	C9orf78	Q9NZ63	289 aa	Predicted RBP	12.45	□□□□□ -0.42
CALD1-223	ENST00000496024	ALDH1L1	O75891	902 aa		12.44	□□□□□ -0.42
CALD1-223	ENST00000496024	PRELP	P51888	382 aa		12.44	□□□□□ -0.42
CALD1-223	ENST00000496024	CTSW	P56202	376 aa		12.44	□□□□□ -0.42
CALD1-223	ENST00000496024	GRAP	Q13588	217 aa		12.44	□□□□□ -0.42
CALD1-223	ENST00000496024	CCDC152	Q4G0S7	254 aa		12.44	□□□□□ -0.42
CALD1-223	ENST00000496024	GRAPL	Q8TC17	118 aa	Predicted RBP	12.44	□□□□□ -0.42
CALD1-223	ENST00000496024	CELF1	Q92879	486 aa	Known RBP	12.44	□□□□□ -0.42
CALD1-223	ENST00000496024	TMX4	Q9H1E5	349 aa	Predicted RBP	12.44	□□□□□ -0.42
CALD1-223	ENST00000496024	TAOK3	Q9H2K8	898 aa		12.44	□□□□□ -0.42
CALD1-223	ENST00000496024	SEC31B	Q9NQW1	1179 aa		12.44	□□□□□ -0.42
CALD1-223	ENST00000496024	MYH3	P11055	1940 aa		12.44	□□□□□ -0.42
CALD1-223	ENST00000496024	GRM8	O00222	908 aa		12.43	□□□□□ -0.42
CALD1-223	ENST00000496024	BBOX1	O75936	387 aa		12.43	□□□□□ -0.42
CALD1-223	ENST00000496024	LMNB1	P20700	586 aa		12.43	□□□□□ -0.42
CALD1-223	ENST00000496024	ZNF526	Q8TF50	670 aa	Predicted RBP	12.43	□□□□□ -0.42
CALD1-223	ENST00000496024	KIF16B	Q96L93	1317 aa		12.42	□□□□□ -0.42
CALD1-223	ENST00000496024	CASP7	P55210	303 aa		12.42	□□□□□ -0.42
CALD1-223	ENST00000496024	RTKN2	Q8IZC4	609 aa		12.42	□□□□□ -0.42
CALD1-223	ENST00000496024	TTLL11	Q8NHH1	800 aa		12.42	□□□□□ -0.42
CALD1-223	ENST00000496024	API5	Q9BZZ5	524 aa	Known RBP	12.42	□□□□□ -0.42
CALD1-223	ENST00000496024	ZNF277	Q9NRM2	450 aa	Predicted RBP	12.42	□□□□□ -0.42
CALD1-223	ENST00000496024	TNN	Q9UQP3	1299 aa		12.42	□□□□□ -0.42
CALD1-223	ENST00000496024	CHMP3	Q9Y3E7	222 aa		12.42	□□□□□ -0.42
CALD1-223	ENST00000496024	ATP6V0A2	Q9Y487	856 aa		12.42	□□□□□ -0.42
CALD1-223	ENST00000496024	COL4A1	P02462	1669 aa		12.42	□□□□□ -0.42
CALD1-223	ENST00000496024	BRPF1	P55201	1214 aa	Predicted RBP	12.41	□□□□□ -0.42
CALD1-223	ENST00000496024	RPS8	P62241	208 aa	Known RBP	12.41	□□□□□ -0.42
CALD1-223	ENST00000496024	FKBP4	Q02790	459 aa	Known RBP eCLIP	12.41	□□□□□ -0.42
CALD1-223	ENST00000496024	CC2D2B	Q6DHV5	1058 aa		12.41	□□□□□ -0.42
CALD1-223	ENST00000496024	SP8	Q8IXZ3	490 aa		12.41	□□□□□ -0.42
CALD1-223	ENST00000496024	ZNF784	Q8NCA9	323 aa	Predicted RBP	12.41	□□□□□ -0.42
CALD1-223	ENST00000496024	GREM2	Q9H772	168 aa		12.41	□□□□□ -0.42
CALD1-223	ENST00000496024	IPO8	O15397	1037 aa	Known RBP	12.4	□□□□□ -0.42
CALD1-223	ENST00000496024	NBPF7	P0C2Y1	421 aa	Predicted RBP	12.4	□□□□□ -0.42
CALD1-223	ENST00000496024	FAM161A	Q3B820	660 aa		12.4	□□□□□ -0.42
CALD1-223	ENST00000496024	EPHA10	Q5JZY3	1008 aa		12.4	□□□□□ -0.42
CALD1-223	ENST00000496024	CLUAP1	Q96AJ1	413 aa		12.4	□□□□□ -0.42
CALD1-223	ENST00000496024	PLA2G12B	Q9BX93	195 aa		12.4	□□□□□ -0.42
CALD1-223	ENST00000496024	LTBP3	Q9NS15	1303 aa		12.39	□□□□□ -0.43
CALD1-223	ENST00000496024	SPEF2	Q9C093	1822 aa		12.39	□□□□□ -0.43
CALD1-223	ENST00000496024	CCT4	P50991	539 aa	Known RBP	12.39	□□□□□ -0.43
CALD1-223	ENST00000496024	LMBR1L	Q6UX01	489 aa		12.39	□□□□□ -0.43
CALD1-223	ENST00000496024	DPP8	Q6V1X1	898 aa	Predicted RBP	12.39	□□□□□ -0.43
CALD1-223	ENST00000496024	ANKRD18A	Q8IVF6	992 aa		12.39	□□□□□ -0.43
CALD1-223	ENST00000496024	MPND	Q8N594	471 aa		12.39	□□□□□ -0.43
CALD1-223	ENST00000496024	SUCLG2	Q96I99	432 aa		12.39	□□□□□ -0.43
CALD1-223	ENST00000496024	CDC5L	Q99459	802 aa	Known RBP	12.39	□□□□□ -0.43
CALD1-223	ENST00000496024	CSF1R	P07333	972 aa		12.38	□□□□□ -0.43
CALD1-223	ENST00000496024	TRIM27	P14373	513 aa		12.38	□□□□□ -0.43
CALD1-223	ENST00000496024	ITGA6	P23229	1130 aa		12.38	□□□□□ -0.43
CALD1-223	ENST00000496024	IARS	P41252	1262 aa	Known RBP	12.38	□□□□□ -0.43
CALD1-223	ENST00000496024	FOXO4	P98177	505 aa		12.38	□□□□□ -0.43
CALD1-223	ENST00000496024	ZKSCAN2	Q63HK3	967 aa		12.38	□□□□□ -0.43
CALD1-223	ENST00000496024	ATF7IP	Q6VMQ6	1270 aa		12.38	□□□□□ -0.43
CALD1-223	ENST00000496024	TMC4	Q7Z404	712 aa		12.38	□□□□□ -0.43
CALD1-223	ENST00000496024	ARHGAP45	Q92619	1136 aa		12.38	□□□□□ -0.43
CALD1-223	ENST00000496024	PSMD1	Q99460	953 aa		12.38	□□□□□ -0.43
CALD1-223	ENST00000496024	USP44	Q9H0E7	712 aa		12.38	□□□□□ -0.43
CALD1-223	ENST00000496024	NSFL1C	Q9UNZ2	370 aa	Known RBP	12.38	□□□□□ -0.43
CALD1-223	ENST00000496024	DICER1	Q9UPY3	1922 aa	Known RBP	12.38	□□□□□ -0.43
CALD1-223	ENST00000496024	TIAM2	Q8IVF5	1701 aa		12.37	□□□□□ -0.43
CALD1-223	ENST00000496024	IGHMBP2	P38935	993 aa	Known RBP	12.37	□□□□□ -0.43
CALD1-223	ENST00000496024	GPSM2	P81274	684 aa		12.37	□□□□□ -0.43
CALD1-223	ENST00000496024	LARGE2	Q8N3Y3	721 aa		12.37	□□□□□ -0.43
CALD1-223	ENST00000496024	BICC1	Q9H694	974 aa	Known RBP	12.37	□□□□□ -0.43
CALD1-223	ENST00000496024	SNED1	Q8TER0	1413 aa		12.37	□□□□□ -0.43
CALD1-223	ENST00000496024	RTL9	Q8NET4	1388 aa		12.36	□□□□□ -0.43
CALD1-223	ENST00000496024	ANKRD18B	A2A2Z9	1011 aa		12.36	□□□□□ -0.43
CALD1-223	ENST00000496024	C6orf229	H3BNL8	230 aa		12.36	□□□□□ -0.43
CALD1-223	ENST00000496024	PPIP5K2	O43314	1243 aa		12.36	□□□□□ -0.43
CALD1-223	ENST00000496024	IFIT5	Q13325	482 aa	Known RBP	12.36	□□□□□ -0.43
CALD1-223	ENST00000496024	AOC3	Q16853	763 aa		12.36	□□□□□ -0.43
CALD1-223	ENST00000496024	CCDC57	Q2TAC2	916 aa		12.36	□□□□□ -0.43
CALD1-223	ENST00000496024	GRIPAP1	Q4V328	841 aa		12.36	□□□□□ -0.43
CALD1-223	ENST00000496024	TAF7L	Q5H9L4	462 aa		12.36	□□□□□ -0.43
CALD1-223	ENST00000496024	KAZALD1	Q96I82	304 aa		12.36	□□□□□ -0.43
CALD1-223	ENST00000496024	GPR101	Q96P66	508 aa	Predicted RBP	12.36	□□□□□ -0.43
CALD1-223	ENST00000496024	GPBP1L1	Q9HC44	474 aa	Predicted RBP	12.36	□□□□□ -0.43
CALD1-223	ENST00000496024	ANKIB1	Q9P2G1	1089 aa		12.36	□□□□□ -0.43
CALD1-223	ENST00000496024	UTY	O14607	1347 aa		12.36	□□□□□ -0.43
CALD1-223	ENST00000496024	UBTFL1	P0CB47	393 aa	Predicted RBP	12.35	□□□□□ -0.43
CALD1-223	ENST00000496024	FTSJ3	Q8IY81	847 aa	Known RBP	12.35	□□□□□ -0.43
CALD1-223	ENST00000496024	TMEM57	Q8N5G2	664 aa		12.35	□□□□□ -0.43
CALD1-223	ENST00000496024	SUPT20H	Q8NEM7	779 aa		12.35	□□□□□ -0.43
CALD1-223	ENST00000496024	JDP2	Q8WYK2	163 aa		12.35	□□□□□ -0.43
CALD1-223	ENST00000496024	ZNF594	Q96JF6	807 aa	Predicted RBP	12.35	□□□□□ -0.43
CALD1-223	ENST00000496024	MPHOSPH8	Q99549	860 aa		12.35	□□□□□ -0.43
CALD1-223	ENST00000496024	MEIS3	Q99687	375 aa		12.35	□□□□□ -0.43
CALD1-223	ENST00000496024	RCAN3	Q9UKA8	241 aa		12.35	□□□□□ -0.43
CALD1-223	ENST00000496024	LRRC37A	A6NMS7	1700 aa		12.34	□□□□□ -0.43
CALD1-223	ENST00000496024	RIMBP2	O15034	1052 aa		12.34	□□□□□ -0.43
CALD1-223	ENST00000496024	UFL1	O94874	794 aa		12.34	□□□□□ -0.43
CALD1-223	ENST00000496024	INTS3	Q68E01	1043 aa	Known RBP	12.34	□□□□□ -0.43
CALD1-223	ENST00000496024	ANKRD44	Q8N8A2	993 aa		12.34	□□□□□ -0.43
CALD1-223	ENST00000496024	BSDC1	Q9NW68	430 aa	Predicted RBP	12.34	□□□□□ -0.43
CALD1-223	ENST00000496024	POLL	Q9UGP5	575 aa		12.34	□□□□□ -0.43
CALD1-223	ENST00000496024	MINPP1	Q9UNW1	487 aa		12.34	□□□□□ -0.43

Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms