RNA–Protein interactions for RNA: ENST00000494503.1

UBR4-216, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-216ENST00000494503 SH3TC1Q8TE82 1336 aa12.57□□□□□ -0.4
UBR4-216ENST00000494503 RTL5Q5HYW3 569 aaPredicted RBP12.56□□□□□ -0.4
UBR4-216ENST00000494503 HDGFL1Q5TGJ6 251 aa12.56□□□□□ -0.4
UBR4-216ENST00000494503 CIAPIN1Q6FI81 312 aa12.56□□□□□ -0.4
UBR4-216ENST00000494503 NLRP10Q86W26 655 aa12.56□□□□□ -0.4
UBR4-216ENST00000494503 GPRC5DQ9NZD1 345 aa12.56□□□□□ -0.4
UBR4-216ENST00000494503 CHPF2Q9P2E5 772 aa12.56□□□□□ -0.4
UBR4-216ENST00000494503 BBOX1O75936 387 aa12.55□□□□□ -0.4
UBR4-216ENST00000494503 CELF2O95319 508 aaKnown RBP12.55□□□□□ -0.4
UBR4-216ENST00000494503 CXCL9Q07325 125 aa12.55□□□□□ -0.4
UBR4-216ENST00000494503 DDX10Q13206 875 aaKnown RBP12.55□□□□□ -0.4
UBR4-216ENST00000494503 GRAPQ13588 217 aa12.55□□□□□ -0.4
UBR4-216ENST00000494503 TNIP1Q15025 636 aa12.55□□□□□ -0.4
UBR4-216ENST00000494503 GRAPLQ8TC17 118 aaPredicted RBP12.55□□□□□ -0.4
UBR4-216ENST00000494503 GPR101Q96P66 508 aaPredicted RBP12.55□□□□□ -0.4
UBR4-216ENST00000494503 ATP5J2-PTCD1G3V325 749 aa12.54□□□□□ -0.4
UBR4-216ENST00000494503 HSPA8P11142 646 aaKnown RBP12.54□□□□□ -0.4
UBR4-216ENST00000494503 TCIRG1Q13488 830 aa12.54□□□□□ -0.4
UBR4-216ENST00000494503 SLC10A5Q5PT55 438 aa12.54□□□□□ -0.4
UBR4-216ENST00000494503 LRP10Q7Z4F1 713 aa12.54□□□□□ -0.4
UBR4-216ENST00000494503 SP8Q8IXZ3 490 aa12.54□□□□□ -0.4
UBR4-216ENST00000494503 GLIS2Q9BZE0 524 aaPredicted RBP12.54□□□□□ -0.4
UBR4-216ENST00000494503 BABAM1Q9NWV8 329 aa12.54□□□□□ -0.4
UBR4-216ENST00000494503 TSKSQ9UJT2 592 aa12.54□□□□□ -0.4
UBR4-216ENST00000494503 C6orf229H3BNL8 230 aa12.53□□□□□ -0.4
UBR4-216ENST00000494503 RIMBP2O15034 1052 aa12.53□□□□□ -0.4
UBR4-216ENST00000494503 AOC2O75106 756 aa12.53□□□□□ -0.4
UBR4-216ENST00000494503 KIAA2012Q0VF49 1180 aa12.53□□□□□ -0.4
UBR4-216ENST00000494503 FAM89AQ96GI7 184 aa12.53□□□□□ -0.4
UBR4-216ENST00000494503 CFAP44Q96MT7 982 aa12.53□□□□□ -0.4
UBR4-216ENST00000494503 VPS33BQ9H267 617 aa12.53□□□□□ -0.4
UBR4-216ENST00000494503 NSFL1CQ9UNZ2 370 aaKnown RBP12.53□□□□□ -0.4
UBR4-216ENST00000494503 MYBBP1AQ9BQG0 1328 aaKnown RBP12.53□□□□□ -0.4
UBR4-216ENST00000494503 DDX60Q8IY21 1712 aaKnown RBP12.53□□□□□ -0.4
UBR4-216ENST00000494503 G3V3G9 751 aa12.52□□□□□ -0.41
UBR4-216ENST00000494503 H7C1D1 291 aa12.52□□□□□ -0.41
UBR4-216ENST00000494503 DCAF8Q5TAQ9 597 aa12.52□□□□□ -0.41
UBR4-216ENST00000494503 CST9Q5W186 159 aa12.52□□□□□ -0.41
UBR4-216ENST00000494503 RUNDC1Q96C34 613 aa12.52□□□□□ -0.41
UBR4-216ENST00000494503 RTFDC1Q9BY42 306 aaPredicted RBP12.52□□□□□ -0.41
UBR4-216ENST00000494503 DBNDD1Q9H9R9 158 aa12.52□□□□□ -0.41
UBR4-216ENST00000494503 TLL2Q9Y6L7 1015 aa12.52□□□□□ -0.41
UBR4-216ENST00000494503 WASHC4Q2M389 1173 aa12.51□□□□□ -0.41
UBR4-216ENST00000494503 RBM26Q5T8P6 1007 aaKnown RBP12.51□□□□□ -0.41
UBR4-216ENST00000494503 ANKRD13DQ6ZTN6 518 aa12.51□□□□□ -0.41
UBR4-216ENST00000494503 MICALL2Q8IY33 904 aa12.51□□□□□ -0.41
UBR4-216ENST00000494503 PLBD2Q8NHP8 589 aa12.51□□□□□ -0.41
UBR4-216ENST00000494503 TRPM4Q8TD43 1214 aa12.51□□□□□ -0.41
UBR4-216ENST00000494503 DBF4Q9UBU7 674 aaPredicted RBP12.51□□□□□ -0.41
UBR4-216ENST00000494503 CNOT7Q9UIV1 285 aaKnown RBP12.51□□□□□ -0.41
UBR4-216ENST00000494503 ZBTB12Q9Y330 459 aaPredicted RBP12.51□□□□□ -0.41
UBR4-216ENST00000494503 SHTN1A0MZ66 631 aa12.5□□□□□ -0.41
UBR4-216ENST00000494503 CCDC85CA6NKD9 419 aa12.5□□□□□ -0.41
UBR4-216ENST00000494503 CHL1O00533 1208 aa12.5□□□□□ -0.41
UBR4-216ENST00000494503 GOLGA2Q08379 1002 aa12.5□□□□□ -0.41
UBR4-216ENST00000494503 DOK7Q18PE1 504 aa12.5□□□□□ -0.41
UBR4-216ENST00000494503 TMC4Q7Z404 712 aa12.5□□□□□ -0.41
UBR4-216ENST00000494503 RIC3Q7Z5B4 369 aa12.5□□□□□ -0.41
UBR4-216ENST00000494503 CELF1Q92879 486 aaKnown RBP12.5□□□□□ -0.41
UBR4-216ENST00000494503 ABHD8Q96I13 439 aa12.5□□□□□ -0.41
UBR4-216ENST00000494503 CDHR2Q9BYE9 1310 aa12.5□□□□□ -0.41
UBR4-216ENST00000494503 POLR2AP24928 1970 aaKnown RBP12.49□□□□□ -0.41
UBR4-216ENST00000494503 CASP8AP2Q9UKL3 1982 aa12.49□□□□□ -0.41
UBR4-216ENST00000494503 LRRC37AA6NMS7 1700 aa12.49□□□□□ -0.41
UBR4-216ENST00000494503 THSD7BQ9C0I4 1608 aa12.49□□□□□ -0.41
UBR4-216ENST00000494503 YDJCA8MPS7 323 aa12.49□□□□□ -0.41
UBR4-216ENST00000494503 ELL2O00472 640 aaPredicted RBP12.49□□□□□ -0.41
UBR4-216ENST00000494503 IRS4O14654 1257 aaPredicted RBP12.49□□□□□ -0.41
UBR4-216ENST00000494503 TBC1D10BQ4KMP7 808 aaPredicted RBP12.49□□□□□ -0.41
UBR4-216ENST00000494503 DUSP27Q5VZP5 1158 aa12.49□□□□□ -0.41
UBR4-216ENST00000494503 CDC37L1Q7L3B6 337 aa12.49□□□□□ -0.41
UBR4-216ENST00000494503 SAPCD2Q86UD0 394 aa12.49□□□□□ -0.41
UBR4-216ENST00000494503 USP48Q86UV5 1035 aa12.49□□□□□ -0.41
UBR4-216ENST00000494503 HYPKQ9NX55 129 aa12.49□□□□□ -0.41
UBR4-216ENST00000494503 TRIM35Q9UPQ4 493 aa12.49□□□□□ -0.41
UBR4-216ENST00000494503 DUOX1Q9NRD9 1551 aa12.48□□□□□ -0.41
UBR4-216ENST00000494503 PSMD14O00487 310 aa12.48□□□□□ -0.41
UBR4-216ENST00000494503 GPSM2P81274 684 aa12.48□□□□□ -0.41
UBR4-216ENST00000494503 SAMD7Q7Z3H4 446 aa12.48□□□□□ -0.41
UBR4-216ENST00000494503 CCDC85AQ96PX6 553 aaPredicted RBP12.48□□□□□ -0.41
UBR4-216ENST00000494503 EYA3Q99504 573 aa12.48□□□□□ -0.41
UBR4-216ENST00000494503 ANKIB1Q9P2G1 1089 aa12.48□□□□□ -0.41
UBR4-216ENST00000494503 ADAMTS8Q9UP79 889 aa12.48□□□□□ -0.41
UBR4-216ENST00000494503 ECE2O60344 883 aa12.47□□□□□ -0.41
UBR4-216ENST00000494503 HOXB7P09629 217 aa12.47□□□□□ -0.41
UBR4-216ENST00000494503 MAP2K2P36507 400 aa12.47□□□□□ -0.41
UBR4-216ENST00000494503 HIRAP54198 1017 aaPredicted RBP12.47□□□□□ -0.41
UBR4-216ENST00000494503 HUNKP57058 714 aa12.47□□□□□ -0.41
UBR4-216ENST00000494503 KRT26Q7Z3Y9 468 aa12.47□□□□□ -0.41
UBR4-216ENST00000494503 ZC3H15Q8WU90 426 aaKnown RBP12.47□□□□□ -0.41
UBR4-216ENST00000494503 DCPSQ96C86 337 aaKnown RBP12.47□□□□□ -0.41
UBR4-216ENST00000494503 MYD88Q99836 296 aa12.47□□□□□ -0.41
UBR4-216ENST00000494503 MBIPQ9NS73 344 aa12.47□□□□□ -0.41
UBR4-216ENST00000494503 UFL1O94874 794 aa12.46□□□□□ -0.41
UBR4-216ENST00000494503 FAM161AQ3B820 660 aa12.46□□□□□ -0.41
UBR4-216ENST00000494503 DLK2Q6UY11 383 aa12.46□□□□□ -0.41
UBR4-216ENST00000494503 ISCA1Q9BUE6 129 aa12.46□□□□□ -0.41
UBR4-216ENST00000494503 ZC3H12CQ9C0D7 883 aaKnown RBP12.46□□□□□ -0.41
UBR4-216ENST00000494503 POLLQ9UGP5 575 aa12.46□□□□□ -0.41
UBR4-216ENST00000494503 ADM5C9JUS6 153 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms