RNA–Protein interactions for RNA: ENST00000493949.1

PDLIM1-205, Transcript of PDZ and LIM domain 1, humanhuman

TSL 3

Gene PDLIM1, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-205ENST00000493949 MKI67P46013 3256 aaKnown RBP13.54□□□□□ -0.24
PDLIM1-205ENST00000493949 FAM155AB1AL88 458 aaPredicted RBP13.53□□□□□ -0.24
PDLIM1-205ENST00000493949 NBR1Q14596 966 aa13.53□□□□□ -0.24
PDLIM1-205ENST00000493949 CRY2Q49AN0 593 aa13.53□□□□□ -0.24
PDLIM1-205ENST00000493949 ZNF790Q6PG37 636 aa13.53□□□□□ -0.24
PDLIM1-205ENST00000493949 NPM2Q86SE8 214 aaKnown RBP13.53□□□□□ -0.24
PDLIM1-205ENST00000493949 DZIP3Q86Y13 1208 aaKnown RBP13.53□□□□□ -0.24
PDLIM1-205ENST00000493949 GLIS2Q9BZE0 524 aaPredicted RBP13.53□□□□□ -0.24
PDLIM1-205ENST00000493949 PANK3Q9H999 370 aa13.53□□□□□ -0.24
PDLIM1-205ENST00000493949 A1BGP04217 495 aa13.52□□□□□ -0.25
PDLIM1-205ENST00000493949 LARGE2Q8N3Y3 721 aa13.52□□□□□ -0.25
PDLIM1-205ENST00000493949 EXOC6Q8TAG9 804 aa13.52□□□□□ -0.25
PDLIM1-205ENST00000493949 HPS5Q9UPZ3 1129 aa13.52□□□□□ -0.25
PDLIM1-205ENST00000493949 CDHR2Q9BYE9 1310 aa13.52□□□□□ -0.25
PDLIM1-205ENST00000493949 HMOX1P09601 288 aa13.51□□□□□ -0.25
PDLIM1-205ENST00000493949 HUNKP57058 714 aa13.51□□□□□ -0.25
PDLIM1-205ENST00000493949 PKN2Q16513 984 aaKnown RBP13.51□□□□□ -0.25
PDLIM1-205ENST00000493949 CDC37L1Q7L3B6 337 aa13.51□□□□□ -0.25
PDLIM1-205ENST00000493949 RNF186Q9NXI6 227 aa13.51□□□□□ -0.25
PDLIM1-205ENST00000493949 ZNF652Q9Y2D9 606 aa13.51□□□□□ -0.25
PDLIM1-205ENST00000493949 AAMPQ13685 434 aa13.5□□□□□ -0.25
PDLIM1-205ENST00000493949 MTHFSDQ2M296 383 aaKnown RBP13.5□□□□□ -0.25
PDLIM1-205ENST00000493949 RGMBQ6NW40 437 aa13.5□□□□□ -0.25
PDLIM1-205ENST00000493949 VPS33BQ9H267 617 aa13.5□□□□□ -0.25
PDLIM1-205ENST00000493949 RIC1Q4ADV7 1423 aa13.49□□□□□ -0.25
PDLIM1-205ENST00000493949 NUP98P52948 1817 aa13.49□□□□□ -0.25
PDLIM1-205ENST00000493949 HOXA10P31260 410 aaPredicted RBP13.49□□□□□ -0.25
PDLIM1-205ENST00000493949 HIRAP54198 1017 aaPredicted RBP13.49□□□□□ -0.25
PDLIM1-205ENST00000493949 MORC1Q86VD1 984 aa13.49□□□□□ -0.25
PDLIM1-205ENST00000493949 NIM1KQ8IY84 436 aa13.49□□□□□ -0.25
PDLIM1-205ENST00000493949 CCDC102AQ96A19 550 aa13.49□□□□□ -0.25
PDLIM1-205ENST00000493949 ZNF408Q9H9D4 720 aa13.49□□□□□ -0.25
PDLIM1-205ENST00000493949 TRPA1O75762 1119 aa13.48□□□□□ -0.25
PDLIM1-205ENST00000493949 KIF23Q02241 960 aaPredicted RBP13.48□□□□□ -0.25
PDLIM1-205ENST00000493949 CXCL9Q07325 125 aa13.48□□□□□ -0.25
PDLIM1-205ENST00000493949 FMNL2Q96PY5 1086 aa13.48□□□□□ -0.25
PDLIM1-205ENST00000493949 NIP7Q9Y221 180 aaKnown RBP eCLIP13.48□□□□□ -0.25
PDLIM1-205ENST00000493949 PIP4K2AP48426 406 aaPredicted RBP13.47□□□□□ -0.25
PDLIM1-205ENST00000493949 RBBP6Q7Z6E9 1792 aaKnown RBP13.46□□□□□ -0.25
PDLIM1-205ENST00000493949 NEFMP07197 916 aa13.46□□□□□ -0.25
PDLIM1-205ENST00000493949 GMPSP49915 693 aaPredicted RBP13.46□□□□□ -0.25
PDLIM1-205ENST00000493949 FXR1P51114 621 aaKnown RBP eCLIP13.46□□□□□ -0.25
PDLIM1-205ENST00000493949 TEFQ10587 303 aa13.46□□□□□ -0.25
PDLIM1-205ENST00000493949 ZNRF3Q9ULT6 936 aa13.46□□□□□ -0.25
PDLIM1-205ENST00000493949 HTTP42858 3142 aa13.46□□□□□ -0.25
PDLIM1-205ENST00000493949 IL17REQ8NFR9 667 aa13.45□□□□□ -0.26
PDLIM1-205ENST00000493949 CSRNP1Q96S65 589 aa13.45□□□□□ -0.26
PDLIM1-205ENST00000493949 A0A0C4DFX4 3053 aa13.45□□□□□ -0.26
PDLIM1-205ENST00000493949 ABCC12Q96J65 1359 aa13.45□□□□□ -0.26
PDLIM1-205ENST00000493949 ZNF521Q96K83 1311 aa13.44□□□□□ -0.26
PDLIM1-205ENST00000493949 PPIP5K2O43314 1243 aa13.44□□□□□ -0.26
PDLIM1-205ENST00000493949 KCNQ3O43525 872 aa13.44□□□□□ -0.26
PDLIM1-205ENST00000493949 SLC10A3P09131 477 aa13.44□□□□□ -0.26
PDLIM1-205ENST00000493949 SLC51AQ86UW1 340 aa13.44□□□□□ -0.26
PDLIM1-205ENST00000493949 TRPM4Q8TD43 1214 aa13.44□□□□□ -0.26
PDLIM1-205ENST00000493949 CRAMP1Q96RY5 1269 aa13.44□□□□□ -0.26
PDLIM1-205ENST00000493949 GBA2Q9HCG7 927 aaPredicted RBP13.44□□□□□ -0.26
PDLIM1-205ENST00000493949 USP16Q9Y5T5 823 aa13.44□□□□□ -0.26
PDLIM1-205ENST00000493949 KIAA0100Q14667 2235 aaKnown RBP13.44□□□□□ -0.26
PDLIM1-205ENST00000493949 CUL9Q8IWT3 2517 aa13.44□□□□□ -0.26
PDLIM1-205ENST00000493949 SZT2Q5T011 3432 aa13.44□□□□□ -0.26
PDLIM1-205ENST00000493949 CEP290O15078 2479 aa13.43□□□□□ -0.26
PDLIM1-205ENST00000493949 AOC3Q16853 763 aa13.43□□□□□ -0.26
PDLIM1-205ENST00000493949 USP48Q86UV5 1035 aa13.43□□□□□ -0.26
PDLIM1-205ENST00000493949 RTFDC1Q9BY42 306 aaPredicted RBP13.43□□□□□ -0.26
PDLIM1-205ENST00000493949 NYXQ9GZU5 481 aa13.43□□□□□ -0.26
PDLIM1-205ENST00000493949 DAXXQ9UER7 740 aaPredicted RBP13.43□□□□□ -0.26
PDLIM1-205ENST00000493949 CEMIPQ8WUJ3 1361 aa13.43□□□□□ -0.26
PDLIM1-205ENST00000493949 IBTKQ9P2D0 1353 aaPredicted RBP13.43□□□□□ -0.26
PDLIM1-205ENST00000493949 PRAMEF22A3QJZ6 481 aa13.42□□□□□ -0.26
PDLIM1-205ENST00000493949 GTF2E1P29083 439 aaPredicted RBP13.42□□□□□ -0.26
PDLIM1-205ENST00000493949 ZNF157P51786 506 aaPredicted RBP13.42□□□□□ -0.26
PDLIM1-205ENST00000493949 NOM1Q5C9Z4 860 aaKnown RBP13.42□□□□□ -0.26
PDLIM1-205ENST00000493949 C2orf69Q8N8R5 385 aa13.42□□□□□ -0.26
PDLIM1-205ENST00000493949 RPGRQ92834 1020 aaKnown RBP13.42□□□□□ -0.26
PDLIM1-205ENST00000493949 TRIOBPQ9H2D6 2365 aa13.41□□□□□ -0.26
PDLIM1-205ENST00000493949 CENPFP49454 3210 aa13.41□□□□□ -0.26
PDLIM1-205ENST00000493949 FAM177BA6PVY3 158 aa13.41□□□□□ -0.26
PDLIM1-205ENST00000493949 GNAT3A8MTJ3 354 aa13.41□□□□□ -0.26
PDLIM1-205ENST00000493949 PPEF1O14829 653 aaPredicted RBP13.41□□□□□ -0.26
PDLIM1-205ENST00000493949 TNIP1Q15025 636 aa13.41□□□□□ -0.26
PDLIM1-205ENST00000493949 FBXO46Q6PJ61 603 aaPredicted RBP13.41□□□□□ -0.26
PDLIM1-205ENST00000493949 SUPT20HQ8NEM7 779 aa13.41□□□□□ -0.26
PDLIM1-205ENST00000493949 CNOT7Q9UIV1 285 aaKnown RBP13.41□□□□□ -0.26
PDLIM1-205ENST00000493949 MAPK8IP3Q9UPT6 1336 aa13.4□□□□□ -0.26
PDLIM1-205ENST00000493949 NBPF26B4DH59 902 aa13.4□□□□□ -0.26
PDLIM1-205ENST00000493949 CD44P16070 742 aaKnown RBP13.4□□□□□ -0.26
PDLIM1-205ENST00000493949 GOLGA2Q08379 1002 aa13.4□□□□□ -0.26
PDLIM1-205ENST00000493949 GSE1Q14687 1217 aa13.4□□□□□ -0.26
PDLIM1-205ENST00000493949 WDR43Q15061 677 aaKnown RBP eCLIP13.4□□□□□ -0.26
PDLIM1-205ENST00000493949 HLFQ16534 295 aa13.4□□□□□ -0.26
PDLIM1-205ENST00000493949 NBPF10Q6P3W6 841 aaKnown RBP13.4□□□□□ -0.26
PDLIM1-205ENST00000493949 DLK2Q6UY11 383 aa13.4□□□□□ -0.26
PDLIM1-205ENST00000493949 CRBNQ96SW2 442 aa13.4□□□□□ -0.26
PDLIM1-205ENST00000493949 BCL2L13Q9BXK5 485 aa13.4□□□□□ -0.26
PDLIM1-205ENST00000493949 LAMB4A4D0S4 1761 aa13.4□□□□□ -0.26
PDLIM1-205ENST00000493949 H7C1D1 291 aa13.39□□□□□ -0.27
PDLIM1-205ENST00000493949 KIAA2012Q0VF49 1180 aa13.39□□□□□ -0.27
PDLIM1-205ENST00000493949 KRT26Q7Z3Y9 468 aa13.39□□□□□ -0.27
PDLIM1-205ENST00000493949 NUTM1Q86Y26 1132 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms