RNA–Protein interactions for RNA: ENST00000493682.6

COL9A1-210, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 5

Gene COL9A1, Length 1,117 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-210ENST00000493682 MPNDQ8N594 471 aa22.7■■□□□ 1.22
COL9A1-210ENST00000493682 RUNDC1Q96C34 613 aa22.7■■□□□ 1.22
COL9A1-210ENST00000493682 WDR33Q9C0J8 1336 aaKnown RBP22.69■■□□□ 1.22
COL9A1-210ENST00000493682 GRAPQ13588 217 aa22.69■■□□□ 1.22
COL9A1-210ENST00000493682 GRAPLQ8TC17 118 aaPredicted RBP22.69■■□□□ 1.22
COL9A1-210ENST00000493682 ADARB2Q9NS39 739 aaKnown RBP22.69■■□□□ 1.22
COL9A1-210ENST00000493682 TRAF5O00463 557 aa22.68■■□□□ 1.22
COL9A1-210ENST00000493682 KIAA2012Q0VF49 1180 aa22.68■■□□□ 1.22
COL9A1-210ENST00000493682 ZNF428Q96B54 188 aa22.68■■□□□ 1.22
COL9A1-210ENST00000493682 WDR43Q15061 677 aaKnown RBP eCLIP22.67■■□□□ 1.22
COL9A1-210ENST00000493682 HDGFL1Q5TGJ6 251 aa22.67■■□□□ 1.22
COL9A1-210ENST00000493682 CST9Q5W186 159 aa22.67■■□□□ 1.22
COL9A1-210ENST00000493682 PLBD2Q8NHP8 589 aa22.67■■□□□ 1.22
COL9A1-210ENST00000493682 GMPSP49915 693 aaPredicted RBP22.66■■□□□ 1.22
COL9A1-210ENST00000493682 LBX1P52954 281 aa22.66■■□□□ 1.22
COL9A1-210ENST00000493682 ADAMTS8Q9UP79 889 aa22.66■■□□□ 1.22
COL9A1-210ENST00000493682 HOXB7P09629 217 aa22.65■■□□□ 1.22
COL9A1-210ENST00000493682 MAP2K1Q02750 393 aaPredicted RBP22.65■■□□□ 1.22
COL9A1-210ENST00000493682 CIAPIN1Q6FI81 312 aa22.65■■□□□ 1.22
COL9A1-210ENST00000493682 ANKRD13DQ6ZTN6 518 aa22.65■■□□□ 1.22
COL9A1-210ENST00000493682 RAD17O75943 681 aa22.64■■□□□ 1.21
COL9A1-210ENST00000493682 TMC4Q7Z404 712 aa22.64■■□□□ 1.21
COL9A1-210ENST00000493682 ISCA1Q9BUE6 129 aa22.64■■□□□ 1.21
COL9A1-210ENST00000493682 DBF4Q9UBU7 674 aaPredicted RBP22.64■■□□□ 1.21
COL9A1-210ENST00000493682 TAF1P21675 1872 aa22.63■■□□□ 1.21
COL9A1-210ENST00000493682 TNIP1Q15025 636 aa22.63■■□□□ 1.21
COL9A1-210ENST00000493682 FAM89AQ96GI7 184 aa22.63■■□□□ 1.21
COL9A1-210ENST00000493682 CAPNS2Q96L46 248 aa22.63■■□□□ 1.21
COL9A1-210ENST00000493682 DUOX1Q9NRD9 1551 aa22.63■■□□□ 1.21
COL9A1-210ENST00000493682 CDHR2Q9BYE9 1310 aa22.62■■□□□ 1.21
COL9A1-210ENST00000493682 ATP5J2-PTCD1G3V325 749 aa22.62■■□□□ 1.21
COL9A1-210ENST00000493682 HSPA8P11142 646 aaKnown RBP22.62■■□□□ 1.21
COL9A1-210ENST00000493682 ECE1P42892 770 aa22.62■■□□□ 1.21
COL9A1-210ENST00000493682 PAXIP1Q6ZW49 1069 aaPredicted RBP22.62■■□□□ 1.21
COL9A1-210ENST00000493682 CFAP44Q96MT7 982 aa22.62■■□□□ 1.21
COL9A1-210ENST00000493682 BCL2L13Q9BXK5 485 aa22.62■■□□□ 1.21
COL9A1-210ENST00000493682 DDX60Q8IY21 1712 aaKnown RBP22.62■■□□□ 1.21
COL9A1-210ENST00000493682 YDJCA8MPS7 323 aa22.61■■□□□ 1.21
COL9A1-210ENST00000493682 SF3B3Q15393 1217 aaKnown RBP22.61■■□□□ 1.21
COL9A1-210ENST00000493682 DUSP27Q5VZP5 1158 aa22.61■■□□□ 1.21
COL9A1-210ENST00000493682 CYP4F22Q6NT55 531 aa22.61■■□□□ 1.21
COL9A1-210ENST00000493682 TRPM7Q96QT4 1865 aa22.61■■□□□ 1.21
COL9A1-210ENST00000493682 HYPKQ9NX55 129 aa22.61■■□□□ 1.21
COL9A1-210ENST00000493682 PGAP2Q9UHJ9 254 aa22.61■■□□□ 1.21
COL9A1-210ENST00000493682 TLL2Q9Y6L7 1015 aa22.61■■□□□ 1.21
COL9A1-210ENST00000493682 LRRC37AA6NMS7 1700 aa22.6■■□□□ 1.21
COL9A1-210ENST00000493682 HIRAP54198 1017 aaPredicted RBP22.6■■□□□ 1.21
COL9A1-210ENST00000493682 GRM1Q13255 1194 aa22.6■■□□□ 1.21
COL9A1-210ENST00000493682 CELF1Q92879 486 aaKnown RBP22.6■■□□□ 1.21
COL9A1-210ENST00000493682 MBIPQ9NS73 344 aa22.6■■□□□ 1.21
COL9A1-210ENST00000493682 THSD7BQ9C0I4 1608 aa22.6■■□□□ 1.21
COL9A1-210ENST00000493682 GPR101Q96P66 508 aaPredicted RBP22.59■■□□□ 1.21
COL9A1-210ENST00000493682 GLIS2Q9BZE0 524 aaPredicted RBP22.59■■□□□ 1.21
COL9A1-210ENST00000493682 CNOT7Q9UIV1 285 aaKnown RBP22.59■■□□□ 1.21
COL9A1-210ENST00000493682 CELF2O95319 508 aaKnown RBP22.58■■□□□ 1.21
COL9A1-210ENST00000493682 TRIM28Q13263 835 aaKnown RBP22.58■■□□□ 1.21
COL9A1-210ENST00000493682 WASHC4Q2M389 1173 aa22.58■■□□□ 1.21
COL9A1-210ENST00000493682 RTL5Q5HYW3 569 aaPredicted RBP22.58■■□□□ 1.21
COL9A1-210ENST00000493682 TRPM4Q8TD43 1214 aa22.58■■□□□ 1.21
COL9A1-210ENST00000493682 ZC3H15Q8WU90 426 aaKnown RBP22.58■■□□□ 1.21
COL9A1-210ENST00000493682 NSFL1CQ9UNZ2 370 aaKnown RBP22.58■■□□□ 1.21
COL9A1-210ENST00000493682 SHTN1A0MZ66 631 aa22.57■■□□□ 1.2
COL9A1-210ENST00000493682 COL4A1P02462 1669 aa22.56■■□□□ 1.2
COL9A1-210ENST00000493682 IRS4O14654 1257 aaPredicted RBP22.56■■□□□ 1.2
COL9A1-210ENST00000493682 ZNF853P0CG23 659 aa22.56■■□□□ 1.2
COL9A1-210ENST00000493682 SAPCD2Q86UD0 394 aa22.56■■□□□ 1.2
COL9A1-210ENST00000493682 ZBTB12Q9Y330 459 aaPredicted RBP22.56■■□□□ 1.2
COL9A1-210ENST00000493682 C6orf229H3BNL8 230 aa22.55■■□□□ 1.2
COL9A1-210ENST00000493682 H7C1D1 291 aa22.55■■□□□ 1.2
COL9A1-210ENST00000493682 GPSM2P81274 684 aa22.55■■□□□ 1.2
COL9A1-210ENST00000493682 MICALL2Q8IY33 904 aa22.55■■□□□ 1.2
COL9A1-210ENST00000493682 BEGAINQ9BUH8 593 aa22.55■■□□□ 1.2
COL9A1-210ENST00000493682 DBNDD1Q9H9R9 158 aa22.55■■□□□ 1.2
COL9A1-210ENST00000493682 POLLQ9UGP5 575 aa22.55■■□□□ 1.2
COL9A1-210ENST00000493682 RIMBP2O15034 1052 aa22.54■■□□□ 1.2
COL9A1-210ENST00000493682 AOC2O75106 756 aa22.54■■□□□ 1.2
COL9A1-210ENST00000493682 MAP2K2P36507 400 aa22.54■■□□□ 1.2
COL9A1-210ENST00000493682 CDC37L1Q7L3B6 337 aa22.54■■□□□ 1.2
COL9A1-210ENST00000493682 PSMD14O00487 310 aa22.53■■□□□ 1.2
COL9A1-210ENST00000493682 RPS8P62241 208 aaKnown RBP22.53■■□□□ 1.2
COL9A1-210ENST00000493682 GOLGA2Q08379 1002 aa22.53■■□□□ 1.2
COL9A1-210ENST00000493682 RIC3Q7Z5B4 369 aa22.53■■□□□ 1.2
COL9A1-210ENST00000493682 DPF2Q92785 391 aa22.53■■□□□ 1.2
COL9A1-210ENST00000493682 PRKRIP1Q9H875 184 aaPredicted RBP22.53■■□□□ 1.2
COL9A1-210ENST00000493682 ZNF408Q9H9D4 720 aa22.53■■□□□ 1.2
COL9A1-210ENST00000493682 APAF1O14727 1248 aa22.52■■□□□ 1.2
COL9A1-210ENST00000493682 ZBTB38Q8NAP3 1195 aaPredicted RBP22.52■■□□□ 1.2
COL9A1-210ENST00000493682 HHIPL1Q96JK4 782 aa22.52■■□□□ 1.2
COL9A1-210ENST00000493682 PHAXQ9H814 394 aaKnown RBP22.52■■□□□ 1.2
COL9A1-210ENST00000493682 IFT57Q9NWB7 429 aa22.52■■□□□ 1.2
COL9A1-210ENST00000493682 ELL2O00472 640 aaPredicted RBP22.51■■□□□ 1.19
COL9A1-210ENST00000493682 SAMD7Q7Z3H4 446 aa22.51■■□□□ 1.19
COL9A1-210ENST00000493682 TBC1D16Q8TBP0 767 aa22.51■■□□□ 1.19
COL9A1-210ENST00000493682 EYA3Q99504 573 aa22.51■■□□□ 1.19
COL9A1-210ENST00000493682 KCNQ5Q9NR82 932 aa22.51■■□□□ 1.19
COL9A1-210ENST00000493682 ECE2O60344 883 aa22.5■■□□□ 1.19
COL9A1-210ENST00000493682 GNAI1P63096 354 aa22.5■■□□□ 1.19
COL9A1-210ENST00000493682 CALD1Q05682 793 aaKnown RBP22.5■■□□□ 1.19
COL9A1-210ENST00000493682 DOK7Q18PE1 504 aa22.5■■□□□ 1.19
COL9A1-210ENST00000493682 USP48Q86UV5 1035 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms