RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 SLC10A5Q5PT55 438 aa15.7■□□□□ 0.1
VPS52-220ENST00000493674 ANKRD45Q5TZF3 282 aa15.7■□□□□ 0.1
VPS52-220ENST00000493674 COL23A1Q86Y22 540 aaPredicted RBP15.7■□□□□ 0.1
VPS52-220ENST00000493674 SALL3Q9BXA9 1300 aa15.69■□□□□ 0.1
VPS52-220ENST00000493674 SURF6O75683 361 aaKnown RBP15.69■□□□□ 0.1
VPS52-220ENST00000493674 TM4SF1P30408 202 aa15.69■□□□□ 0.1
VPS52-220ENST00000493674 NFIXQ14938 502 aa15.69■□□□□ 0.1
VPS52-220ENST00000493674 HSP90AB4PQ58FF6 505 aa15.69■□□□□ 0.1
VPS52-220ENST00000493674 TTLL11Q8NHH1 800 aa15.69■□□□□ 0.1
VPS52-220ENST00000493674 SETDB2Q96T68 719 aa15.69■□□□□ 0.1
VPS52-220ENST00000493674 LNPKQ9C0E8 428 aa15.69■□□□□ 0.1
VPS52-220ENST00000493674 NYXQ9GZU5 481 aa15.69■□□□□ 0.1
VPS52-220ENST00000493674 TFCP2L1Q9NZI6 479 aa15.69■□□□□ 0.1
VPS52-220ENST00000493674 PA2G4Q9UQ80 394 aaKnown RBP15.69■□□□□ 0.1
VPS52-220ENST00000493674 MYH7P12883 1935 aa15.68■□□□□ 0.1
VPS52-220ENST00000493674 MYH13Q9UKX3 1938 aa15.68■□□□□ 0.1
VPS52-220ENST00000493674 HSP90B1P14625 803 aaKnown RBP15.68■□□□□ 0.1
VPS52-220ENST00000493674 PELP1Q8IZL8 1130 aaKnown RBP15.68■□□□□ 0.1
VPS52-220ENST00000493674 LRRCC1Q9C099 1032 aa15.68■□□□□ 0.1
VPS52-220ENST00000493674 AKAP11Q9UKA4 1901 aa15.67■□□□□ 0.1
VPS52-220ENST00000493674 FAM161AQ3B820 660 aa15.67■□□□□ 0.1
VPS52-220ENST00000493674 ERFEQ4G0M1 354 aa15.67■□□□□ 0.1
VPS52-220ENST00000493674 ERC1Q8IUD2 1116 aa15.67■□□□□ 0.1
VPS52-220ENST00000493674 KIF1BPQ96EK5 621 aa15.67■□□□□ 0.1
VPS52-220ENST00000493674 FBXO3Q9UK99 471 aa15.67■□□□□ 0.1
VPS52-220ENST00000493674 SMARCA5O60264 1052 aaPredicted RBP15.66■□□□□ 0.1
VPS52-220ENST00000493674 SASH1O94885 1247 aa15.66■□□□□ 0.1
VPS52-220ENST00000493674 RGS3P49796 1198 aa15.66■□□□□ 0.1
VPS52-220ENST00000493674 BICDL1Q6ZP65 573 aa15.66■□□□□ 0.1
VPS52-220ENST00000493674 NUTM1Q86Y26 1132 aa15.66■□□□□ 0.1
VPS52-220ENST00000493674 KLHDC4Q8TBB5 520 aa15.66■□□□□ 0.1
VPS52-220ENST00000493674 RHPN1Q8TCX5 695 aa15.66■□□□□ 0.1
VPS52-220ENST00000493674 SLC16A10Q8TF71 515 aa15.66■□□□□ 0.1
VPS52-220ENST00000493674 CIAO1O76071 339 aa15.65■□□□□ 0.1
VPS52-220ENST00000493674 HCLS1P14317 486 aaPredicted RBP15.65■□□□□ 0.1
VPS52-220ENST00000493674 DDR1Q08345 913 aa15.65■□□□□ 0.1
VPS52-220ENST00000493674 SF3B3Q15393 1217 aaKnown RBP15.65■□□□□ 0.1
VPS52-220ENST00000493674 ATG9AQ7Z3C6 839 aa15.65■□□□□ 0.1
VPS52-220ENST00000493674 NBPF5PQ86XG9 351 aaPredicted RBP15.65■□□□□ 0.1
VPS52-220ENST00000493674 GREM2Q9H772 168 aa15.65■□□□□ 0.1
VPS52-220ENST00000493674 LTBP1Q14766 1721 aa15.65■□□□□ 0.1
VPS52-220ENST00000493674 KIAA1551Q9HCM1 1747 aa15.65■□□□□ 0.1
VPS52-220ENST00000493674 FAM177BA6PVY3 158 aa15.64■□□□□ 0.09
VPS52-220ENST00000493674 POLRMTO00411 1230 aaKnown RBP15.64■□□□□ 0.09
VPS52-220ENST00000493674 TPTE2Q6XPS3 522 aa15.64■□□□□ 0.09
VPS52-220ENST00000493674 PLEKHM2Q8IWE5 1019 aa15.64■□□□□ 0.09
VPS52-220ENST00000493674 MYO5AQ9Y4I1 1855 aaKnown RBP15.63■□□□□ 0.09
VPS52-220ENST00000493674 ZNF609O15014 1411 aa15.63■□□□□ 0.09
VPS52-220ENST00000493674 EYA2O00167 538 aa15.63■□□□□ 0.09
VPS52-220ENST00000493674 ITGA6P23229 1130 aa15.63■□□□□ 0.09
VPS52-220ENST00000493674 G3BP1Q13283 466 aaKnown RBP eCLIP15.63■□□□□ 0.09
VPS52-220ENST00000493674 PRR5LQ6MZQ0 368 aa15.63■□□□□ 0.09
VPS52-220ENST00000493674 C3orf67Q6ZVT6 689 aa15.63■□□□□ 0.09
VPS52-220ENST00000493674 NLGN1Q8N2Q7 840 aa15.63■□□□□ 0.09
VPS52-220ENST00000493674 OTUD7AQ8TE49 926 aaPredicted RBP15.63■□□□□ 0.09
VPS52-220ENST00000493674 MTFR1LQ9H019 292 aa15.63■□□□□ 0.09
VPS52-220ENST00000493674 OSBPL3Q9H4L5 887 aa15.63■□□□□ 0.09
VPS52-220ENST00000493674 SPON1Q9HCB6 807 aa15.63■□□□□ 0.09
VPS52-220ENST00000493674 CHMP3Q9Y3E7 222 aa15.63■□□□□ 0.09
VPS52-220ENST00000493674 BRCA1P38398 1863 aaKnown RBP15.63■□□□□ 0.09
VPS52-220ENST00000493674 APBB1O00213 710 aa15.62■□□□□ 0.09
VPS52-220ENST00000493674 IFIT5Q13325 482 aaKnown RBP15.62■□□□□ 0.09
VPS52-220ENST00000493674 CCDC57Q2TAC2 916 aa15.62■□□□□ 0.09
VPS52-220ENST00000493674 CCDC152Q4G0S7 254 aa15.62■□□□□ 0.09
VPS52-220ENST00000493674 C16orf71Q8IYS4 520 aaPredicted RBP15.62■□□□□ 0.09
VPS52-220ENST00000493674 ZNF594Q96JF6 807 aaPredicted RBP15.62■□□□□ 0.09
VPS52-220ENST00000493674 SIL1Q9H173 461 aa15.62■□□□□ 0.09
VPS52-220ENST00000493674 STAP2Q9UGK3 403 aa15.62■□□□□ 0.09
VPS52-220ENST00000493674 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.62■□□□□ 0.09
VPS52-220ENST00000493674 AOX1Q06278 1338 aa15.62■□□□□ 0.09
VPS52-220ENST00000493674 DOCK2Q92608 1830 aa15.61■□□□□ 0.09
VPS52-220ENST00000493674 ANKRD18BA2A2Z9 1011 aa15.61■□□□□ 0.09
VPS52-220ENST00000493674 SERPINB2P05120 415 aa15.61■□□□□ 0.09
VPS52-220ENST00000493674 IL15P40933 162 aaPredicted RBP15.61■□□□□ 0.09
VPS52-220ENST00000493674 CNBD1Q8NA66 436 aa15.61■□□□□ 0.09
VPS52-220ENST00000493674 IL1RAPL2Q9NP60 686 aa15.61■□□□□ 0.09
VPS52-220ENST00000493674 GPR108Q9NPR9 543 aa15.61■□□□□ 0.09
VPS52-220ENST00000493674 ZBTB47Q9UFB7 747 aaPredicted RBP15.61■□□□□ 0.09
VPS52-220ENST00000493674 OS9Q13438 667 aaPredicted RBP15.6■□□□□ 0.09
VPS52-220ENST00000493674 LRRC24Q50LG9 513 aa15.6■□□□□ 0.09
VPS52-220ENST00000493674 RIPOR2Q9Y4F9 1068 aa15.6■□□□□ 0.09
VPS52-220ENST00000493674 KLRG2A4D1S0 409 aaPredicted RBP15.59■□□□□ 0.09
VPS52-220ENST00000493674 PDE1AP54750 535 aa15.59■□□□□ 0.09
VPS52-220ENST00000493674 BMP2KLQ5H9B9 411 aa15.59■□□□□ 0.09
VPS52-220ENST00000493674 CCDC85AQ96PX6 553 aaPredicted RBP15.59■□□□□ 0.09
VPS52-220ENST00000493674 PUS3Q9BZE2 481 aaKnown RBP15.59■□□□□ 0.09
VPS52-220ENST00000493674 MX1P20591 662 aa15.58■□□□□ 0.08
VPS52-220ENST00000493674 TFCP2Q12800 502 aa15.58■□□□□ 0.08
VPS52-220ENST00000493674 CRY2Q49AN0 593 aa15.58■□□□□ 0.08
VPS52-220ENST00000493674 TTC22Q5TAA0 569 aa15.58■□□□□ 0.08
VPS52-220ENST00000493674 CLASRPQ8N2M8 674 aaKnown RBP15.58■□□□□ 0.08
VPS52-220ENST00000493674 VGLL2Q8N8G2 317 aa15.58■□□□□ 0.08
VPS52-220ENST00000493674 EAF2Q96CJ1 260 aaPredicted RBP15.58■□□□□ 0.08
VPS52-220ENST00000493674 NLRP3Q96P20 1036 aa15.58■□□□□ 0.08
VPS52-220ENST00000493674 PDGFDQ9GZP0 370 aaPredicted RBP15.58■□□□□ 0.08
VPS52-220ENST00000493674 SEC31BQ9NQW1 1179 aa15.58■□□□□ 0.08
VPS52-220ENST00000493674 ZBTB7AO95365 584 aa15.57■□□□□ 0.08
VPS52-220ENST00000493674 GTF2E1P29083 439 aaPredicted RBP15.57■□□□□ 0.08
VPS52-220ENST00000493674 ST5P78524 1137 aa15.57■□□□□ 0.08
VPS52-220ENST00000493674 TNNI3KQ59H18 835 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms