RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 UBN2Q6ZU65 1347 aa13.88□□□□□ -0.19
COL6A3-214ENST00000493608 NFKBIEO00221 500 aa13.87□□□□□ -0.19
COL6A3-214ENST00000493608 ELL2O00472 640 aaPredicted RBP13.87□□□□□ -0.19
COL6A3-214ENST00000493608 HDGFL1Q5TGJ6 251 aa13.87□□□□□ -0.19
COL6A3-214ENST00000493608 DUSP27Q5VZP5 1158 aa13.87□□□□□ -0.19
COL6A3-214ENST00000493608 PRPF40BQ6NWY9 871 aaKnown RBP13.87□□□□□ -0.19
COL6A3-214ENST00000493608 CDAN1Q8IWY9 1227 aa13.87□□□□□ -0.19
COL6A3-214ENST00000493608 ZNF34Q8IZ26 560 aa13.87□□□□□ -0.19
COL6A3-214ENST00000493608 ZNF428Q96B54 188 aa13.87□□□□□ -0.19
COL6A3-214ENST00000493608 MRS2Q9HD23 443 aa13.87□□□□□ -0.19
COL6A3-214ENST00000493608 NMRK2Q9NPI5 230 aa13.87□□□□□ -0.19
COL6A3-214ENST00000493608 CHPF2Q9P2E5 772 aa13.87□□□□□ -0.19
COL6A3-214ENST00000493608 KIF3CO14782 793 aa13.86□□□□□ -0.19
COL6A3-214ENST00000493608 ZNF853P0CG23 659 aa13.86□□□□□ -0.19
COL6A3-214ENST00000493608 NPR1P16066 1061 aa13.86□□□□□ -0.19
COL6A3-214ENST00000493608 MARVELD3Q96A59 401 aa13.86□□□□□ -0.19
COL6A3-214ENST00000493608 NYXQ9GZU5 481 aa13.86□□□□□ -0.19
COL6A3-214ENST00000493608 DDX21Q9NR30 783 aaKnown RBP eCLIP13.86□□□□□ -0.19
COL6A3-214ENST00000493608 ABCC12Q96J65 1359 aa13.85□□□□□ -0.19
COL6A3-214ENST00000493608 FER1L6Q2WGJ9 1857 aa13.85□□□□□ -0.19
COL6A3-214ENST00000493608 KLRG2A4D1S0 409 aaPredicted RBP13.85□□□□□ -0.19
COL6A3-214ENST00000493608 LMNB1P20700 586 aa13.85□□□□□ -0.19
COL6A3-214ENST00000493608 OLFM4Q6UX06 510 aa13.85□□□□□ -0.19
COL6A3-214ENST00000493608 TNRC6CQ9HCJ0 1690 aaKnown RBP13.85□□□□□ -0.19
COL6A3-214ENST00000493608 GNAI1P63096 354 aa13.84□□□□□ -0.19
COL6A3-214ENST00000493608 RRAGCQ9HB90 399 aa13.84□□□□□ -0.19
COL6A3-214ENST00000493608 IFT57Q9NWB7 429 aa13.84□□□□□ -0.19
COL6A3-214ENST00000493608 SALL2Q9Y467 1007 aaPredicted RBP13.84□□□□□ -0.19
COL6A3-214ENST00000493608 ARFGEF2Q9Y6D5 1785 aa13.83□□□□□ -0.19
COL6A3-214ENST00000493608 NTSR2O95665 410 aa13.83□□□□□ -0.2
COL6A3-214ENST00000493608 CALD1Q05682 793 aaKnown RBP13.83□□□□□ -0.2
COL6A3-214ENST00000493608 PPP1R42Q7Z4L9 355 aa13.83□□□□□ -0.2
COL6A3-214ENST00000493608 C8orf58Q8NAV2 365 aa13.83□□□□□ -0.2
COL6A3-214ENST00000493608 C7orf43Q8WVR3 580 aa13.83□□□□□ -0.2
COL6A3-214ENST00000493608 TCERG1O14776 1098 aaKnown RBP13.82□□□□□ -0.2
COL6A3-214ENST00000493608 HOXB7P09629 217 aa13.82□□□□□ -0.2
COL6A3-214ENST00000493608 SYNE4Q8N205 404 aa13.82□□□□□ -0.2
COL6A3-214ENST00000493608 TSR2Q969E8 191 aaKnown RBP13.82□□□□□ -0.2
COL6A3-214ENST00000493608 UTP14AQ9BVJ6 771 aaKnown RBP13.82□□□□□ -0.2
COL6A3-214ENST00000493608 DBF4Q9UBU7 674 aaPredicted RBP13.82□□□□□ -0.2
COL6A3-214ENST00000493608 DICER1Q9UPY3 1922 aaKnown RBP13.82□□□□□ -0.2
COL6A3-214ENST00000493608 ANKRD36CQ5JPF3 1778 aa13.81□□□□□ -0.2
COL6A3-214ENST00000493608 ALDH1B1P30837 517 aa13.81□□□□□ -0.2
COL6A3-214ENST00000493608 TCIRG1Q13488 830 aa13.81□□□□□ -0.2
COL6A3-214ENST00000493608 PARP10Q53GL7 1025 aa13.81□□□□□ -0.2
COL6A3-214ENST00000493608 SLC51AQ86UW1 340 aa13.81□□□□□ -0.2
COL6A3-214ENST00000493608 NLRP10Q86W26 655 aa13.81□□□□□ -0.2
COL6A3-214ENST00000493608 RPGRQ92834 1020 aaKnown RBP13.81□□□□□ -0.2
COL6A3-214ENST00000493608 TAOK3Q9H2K8 898 aa13.81□□□□□ -0.2
COL6A3-214ENST00000493608 PHAXQ9H814 394 aaKnown RBP13.81□□□□□ -0.2
COL6A3-214ENST00000493608 KDM2BQ8NHM5 1336 aa13.81□□□□□ -0.2
COL6A3-214ENST00000493608 HCLS1P14317 486 aaPredicted RBP13.8□□□□□ -0.2
COL6A3-214ENST00000493608 CRY2Q49AN0 593 aa13.8□□□□□ -0.2
COL6A3-214ENST00000493608 CCDC93Q567U6 631 aa13.8□□□□□ -0.2
COL6A3-214ENST00000493608 ANKRD13DQ6ZTN6 518 aa13.8□□□□□ -0.2
COL6A3-214ENST00000493608 WWC1Q8IX03 1113 aa13.8□□□□□ -0.2
COL6A3-214ENST00000493608 FAM9BQ8IZU0 186 aa13.8□□□□□ -0.2
COL6A3-214ENST00000493608 TSPYL6Q8N831 410 aa13.8□□□□□ -0.2
COL6A3-214ENST00000493608 HYPKQ9NX55 129 aa13.8□□□□□ -0.2
COL6A3-214ENST00000493608 TIAM2Q8IVF5 1701 aa13.8□□□□□ -0.2
COL6A3-214ENST00000493608 GLTPD2A6NH11 291 aa13.79□□□□□ -0.2
COL6A3-214ENST00000493608 ATP5J2-PTCD1G3V325 749 aa13.79□□□□□ -0.2
COL6A3-214ENST00000493608 HSP90AB3PQ58FF7 597 aa13.79□□□□□ -0.2
COL6A3-214ENST00000493608 SOGA3Q5TF21 947 aa13.79□□□□□ -0.2
COL6A3-214ENST00000493608 PLBD2Q8NHP8 589 aa13.79□□□□□ -0.2
COL6A3-214ENST00000493608 RBM17Q96I25 401 aaKnown RBP13.79□□□□□ -0.2
COL6A3-214ENST00000493608 NLRP3Q96P20 1036 aa13.79□□□□□ -0.2
COL6A3-214ENST00000493608 TRMT112Q9UI30 125 aaKnown RBP13.79□□□□□ -0.2
COL6A3-214ENST00000493608 IBTKQ9P2D0 1353 aaPredicted RBP13.79□□□□□ -0.2
COL6A3-214ENST00000493608 TOMM70O94826 608 aa13.78□□□□□ -0.2
COL6A3-214ENST00000493608 CCDC27Q2M243 656 aa13.78□□□□□ -0.2
COL6A3-214ENST00000493608 RTL5Q5HYW3 569 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-214ENST00000493608 SLC10A5Q5PT55 438 aa13.78□□□□□ -0.2
COL6A3-214ENST00000493608 C16orf71Q8IYS4 520 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-214ENST00000493608 ZNF277Q9NRM2 450 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-214ENST00000493608 LTBP3Q9NS15 1303 aa13.78□□□□□ -0.2
COL6A3-214ENST00000493608 TAF1P21675 1872 aa13.78□□□□□ -0.2
COL6A3-214ENST00000493608 HOXA10P31260 410 aaPredicted RBP13.77□□□□□ -0.21
COL6A3-214ENST00000493608 LAMB2P55268 1798 aa13.77□□□□□ -0.21
COL6A3-214ENST00000493608 RIC3Q7Z5B4 369 aa13.77□□□□□ -0.21
COL6A3-214ENST00000493608 ZC3H4Q9UPT8 1303 aaKnown RBP13.76□□□□□ -0.21
COL6A3-214ENST00000493608 HSPA6P17066 643 aa13.76□□□□□ -0.21
COL6A3-214ENST00000493608 EMP3P54852 163 aa13.76□□□□□ -0.21
COL6A3-214ENST00000493608 FKBP4Q02790 459 aaKnown RBP eCLIP13.76□□□□□ -0.21
COL6A3-214ENST00000493608 RTKN2Q8IZC4 609 aa13.76□□□□□ -0.21
COL6A3-214ENST00000493608 HS6ST3Q8IZP7 471 aa13.76□□□□□ -0.21
COL6A3-214ENST00000493608 FAM89AQ96GI7 184 aa13.76□□□□□ -0.21
COL6A3-214ENST00000493608 CRAMP1Q96RY5 1269 aa13.76□□□□□ -0.21
COL6A3-214ENST00000493608 ISCA1Q9BUE6 129 aa13.76□□□□□ -0.21
COL6A3-214ENST00000493608 RIC1Q4ADV7 1423 aa13.75□□□□□ -0.21
COL6A3-214ENST00000493608 SH3TC1Q8TE82 1336 aa13.75□□□□□ -0.21
COL6A3-214ENST00000493608 POTEB3A0JP26 581 aa13.75□□□□□ -0.21
COL6A3-214ENST00000493608 POTECB2RU33 542 aa13.75□□□□□ -0.21
COL6A3-214ENST00000493608 PPEF1O14829 653 aaPredicted RBP13.75□□□□□ -0.21
COL6A3-214ENST00000493608 DDNO94850 711 aaPredicted RBP13.75□□□□□ -0.21
COL6A3-214ENST00000493608 DOK7Q18PE1 504 aa13.75□□□□□ -0.21
COL6A3-214ENST00000493608 CCDC30Q5VVM6 783 aa13.75□□□□□ -0.21
COL6A3-214ENST00000493608 POTEBQ6S5H4 581 aa13.75□□□□□ -0.21
COL6A3-214ENST00000493608 VEGFAP15692 232 aaPredicted RBP13.74□□□□□ -0.21
COL6A3-214ENST00000493608 JARID2Q92833 1246 aaPredicted RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms