RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 TNIP1Q15025 636 aa15.04■□□□□ -0
COL6A3-213ENST00000493475 MPNDQ8N594 471 aa15.04■□□□□ -0
COL6A3-213ENST00000493475 NECTIN2Q92692 538 aa15.04■□□□□ -0
COL6A3-213ENST00000493475 CDHR2Q9BYE9 1310 aa15.03■□□□□ -0
COL6A3-213ENST00000493475 CHL1O00533 1208 aa15.03■□□□□ -0
COL6A3-213ENST00000493475 ITGBL1O95965 494 aaPredicted RBP15.03■□□□□ -0
COL6A3-213ENST00000493475 ECE1P42892 770 aa15.03■□□□□ -0
COL6A3-213ENST00000493475 PDIA6Q15084 440 aa15.03■□□□□ -0
COL6A3-213ENST00000493475 DEFB115Q30KQ5 88 aa15.03■□□□□ -0
COL6A3-213ENST00000493475 MAP1SQ66K74 1059 aaPredicted RBP15.03■□□□□ -0
COL6A3-213ENST00000493475 NLRP10Q86W26 655 aa15.03■□□□□ -0
COL6A3-213ENST00000493475 SP8Q8IXZ3 490 aa15.03■□□□□ -0
COL6A3-213ENST00000493475 CCDC146Q8IYE0 955 aa15.03■□□□□ -0
COL6A3-213ENST00000493475 PLBD2Q8NHP8 589 aa15.03■□□□□ -0
COL6A3-213ENST00000493475 BEGAINQ9BUH8 593 aa15.03■□□□□ -0
COL6A3-213ENST00000493475 HYPKQ9NX55 129 aa15.03■□□□□ -0
COL6A3-213ENST00000493475 ZNRF3Q9ULT6 936 aa15.03■□□□□ -0
COL6A3-213ENST00000493475 ABCC4O15439 1325 aa15.02■□□□□ -0
COL6A3-213ENST00000493475 CTCFP49711 727 aaPredicted RBP15.02■□□□□ -0
COL6A3-213ENST00000493475 MAP2K1Q02750 393 aaPredicted RBP15.02■□□□□ -0
COL6A3-213ENST00000493475 GRAPQ13588 217 aa15.02■□□□□ -0
COL6A3-213ENST00000493475 AOC3Q16853 763 aa15.02■□□□□ -0
COL6A3-213ENST00000493475 GRAPLQ8TC17 118 aaPredicted RBP15.02■□□□□ -0
COL6A3-213ENST00000493475 ADARB2Q9NS39 739 aaKnown RBP15.02■□□□□ -0
COL6A3-213ENST00000493475 SNED1Q8TER0 1413 aa15.01□□□□□ -0.01
COL6A3-213ENST00000493475 RASSF10A6NK89 507 aa15.01□□□□□ -0.01
COL6A3-213ENST00000493475 ANXA1P04083 346 aa15.01□□□□□ -0.01
COL6A3-213ENST00000493475 ATXN8OSP0DMR3 200 aa15.01□□□□□ -0.01
COL6A3-213ENST00000493475 GOLGA2Q08379 1002 aa15.01□□□□□ -0.01
COL6A3-213ENST00000493475 PROSER3Q2NL68 480 aa15.01□□□□□ -0.01
COL6A3-213ENST00000493475 ANKRD13DQ6ZTN6 518 aa15.01□□□□□ -0.01
COL6A3-213ENST00000493475 PAXIP1Q6ZW49 1069 aaPredicted RBP15.01□□□□□ -0.01
COL6A3-213ENST00000493475 LRP10Q7Z4F1 713 aa15.01□□□□□ -0.01
COL6A3-213ENST00000493475 BCL2L13Q9BXK5 485 aa15.01□□□□□ -0.01
COL6A3-213ENST00000493475 RTFDC1Q9BY42 306 aaPredicted RBP15.01□□□□□ -0.01
COL6A3-213ENST00000493475 CHPF2Q9P2E5 772 aa15.01□□□□□ -0.01
COL6A3-213ENST00000493475 HCLS1P14317 486 aaPredicted RBP15□□□□□ -0.01
COL6A3-213ENST00000493475 VEGFBP49765 207 aa15□□□□□ -0.01
COL6A3-213ENST00000493475 CIAPIN1Q6FI81 312 aa15□□□□□ -0.01
COL6A3-213ENST00000493475 CFAP44Q96MT7 982 aa15□□□□□ -0.01
COL6A3-213ENST00000493475 PRDM10Q9NQV6 1147 aa15□□□□□ -0.01
COL6A3-213ENST00000493475 EPS15P42566 896 aa14.99□□□□□ -0.01
COL6A3-213ENST00000493475 SCNN1DP51172 638 aa14.99□□□□□ -0.01
COL6A3-213ENST00000493475 KIAA2012Q0VF49 1180 aa14.99□□□□□ -0.01
COL6A3-213ENST00000493475 GPRC5DQ9NZD1 345 aa14.99□□□□□ -0.01
COL6A3-213ENST00000493475 H7C1D1 291 aa14.98□□□□□ -0.01
COL6A3-213ENST00000493475 GNAI1P63096 354 aa14.98□□□□□ -0.01
COL6A3-213ENST00000493475 C3orf67Q6ZVT6 689 aa14.98□□□□□ -0.01
COL6A3-213ENST00000493475 EYA3Q99504 573 aa14.98□□□□□ -0.01
COL6A3-213ENST00000493475 WDR33Q9C0J8 1336 aaKnown RBP14.97□□□□□ -0.01
COL6A3-213ENST00000493475 SPDYE2BA6NHP3 402 aa14.97□□□□□ -0.01
COL6A3-213ENST00000493475 G3V3G9 751 aa14.97□□□□□ -0.01
COL6A3-213ENST00000493475 DDX58O95786 925 aaKnown RBP14.97□□□□□ -0.01
COL6A3-213ENST00000493475 SPDYE6P0CI01 402 aa14.97□□□□□ -0.01
COL6A3-213ENST00000493475 SPDYE2Q495Y8 402 aa14.97□□□□□ -0.01
COL6A3-213ENST00000493475 DCAF8Q5TAQ9 597 aa14.97□□□□□ -0.01
COL6A3-213ENST00000493475 DUSP27Q5VZP5 1158 aa14.97□□□□□ -0.01
COL6A3-213ENST00000493475 RIC3Q7Z5B4 369 aa14.97□□□□□ -0.01
COL6A3-213ENST00000493475 ZC3H15Q8WU90 426 aaKnown RBP14.97□□□□□ -0.01
COL6A3-213ENST00000493475 ADAMTS8Q9UP79 889 aa14.97□□□□□ -0.01
COL6A3-213ENST00000493475 ANKRD36CQ5JPF3 1778 aa14.96□□□□□ -0.01
COL6A3-213ENST00000493475 ADAMTSL1Q8N6G6 1762 aa14.96□□□□□ -0.01
COL6A3-213ENST00000493475 FOXN1O15353 648 aa14.96□□□□□ -0.01
COL6A3-213ENST00000493475 GMPSP49915 693 aaPredicted RBP14.96□□□□□ -0.01
COL6A3-213ENST00000493475 CXCL9Q07325 125 aa14.96□□□□□ -0.01
COL6A3-213ENST00000493475 WASHC4Q2M389 1173 aa14.96□□□□□ -0.01
COL6A3-213ENST00000493475 IFT57Q9NWB7 429 aa14.96□□□□□ -0.01
COL6A3-213ENST00000493475 TRIM35Q9UPQ4 493 aa14.96□□□□□ -0.01
COL6A3-213ENST00000493475 TRIM28Q13263 835 aaKnown RBP14.95□□□□□ -0.02
COL6A3-213ENST00000493475 SF3B3Q15393 1217 aaKnown RBP14.95□□□□□ -0.02
COL6A3-213ENST00000493475 WBP1LQ9NX94 342 aa14.95□□□□□ -0.02
COL6A3-213ENST00000493475 NSFL1CQ9UNZ2 370 aaKnown RBP14.95□□□□□ -0.02
COL6A3-213ENST00000493475 C6orf229H3BNL8 230 aa14.94□□□□□ -0.02
COL6A3-213ENST00000493475 IRS4O14654 1257 aaPredicted RBP14.94□□□□□ -0.02
COL6A3-213ENST00000493475 RAD17O75943 681 aa14.94□□□□□ -0.02
COL6A3-213ENST00000493475 GRM1Q13255 1194 aa14.94□□□□□ -0.02
COL6A3-213ENST00000493475 CDC37L1Q7L3B6 337 aa14.94□□□□□ -0.02
COL6A3-213ENST00000493475 FAM89AQ96GI7 184 aa14.94□□□□□ -0.02
COL6A3-213ENST00000493475 CAPNS2Q96L46 248 aa14.94□□□□□ -0.02
COL6A3-213ENST00000493475 ISCA1Q9BUE6 129 aa14.94□□□□□ -0.02
COL6A3-213ENST00000493475 ATP5J2-PTCD1G3V325 749 aa14.93□□□□□ -0.02
COL6A3-213ENST00000493475 CA12O43570 354 aa14.93□□□□□ -0.02
COL6A3-213ENST00000493475 RPS12P25398 132 aaKnown RBP14.93□□□□□ -0.02
COL6A3-213ENST00000493475 KRT24Q2M2I5 525 aa14.93□□□□□ -0.02
COL6A3-213ENST00000493475 CCDC30Q5VVM6 783 aa14.93□□□□□ -0.02
COL6A3-213ENST00000493475 DPF2Q92785 391 aa14.93□□□□□ -0.02
COL6A3-213ENST00000493475 GPR101Q96P66 508 aaPredicted RBP14.93□□□□□ -0.02
COL6A3-213ENST00000493475 PRKRIP1Q9H875 184 aaPredicted RBP14.93□□□□□ -0.02
COL6A3-213ENST00000493475 MBIPQ9NS73 344 aa14.93□□□□□ -0.02
COL6A3-213ENST00000493475 TLL2Q9Y6L7 1015 aa14.93□□□□□ -0.02
COL6A3-213ENST00000493475 CELF2O95319 508 aaKnown RBP14.92□□□□□ -0.02
COL6A3-213ENST00000493475 MAP2K2P36507 400 aa14.92□□□□□ -0.02
COL6A3-213ENST00000493475 CCDC152Q4G0S7 254 aa14.92□□□□□ -0.02
COL6A3-213ENST00000493475 ZBTB38Q8NAP3 1195 aaPredicted RBP14.92□□□□□ -0.02
COL6A3-213ENST00000493475 HHIPL1Q96JK4 782 aa14.92□□□□□ -0.02
COL6A3-213ENST00000493475 ZC3H12CQ9C0D7 883 aaKnown RBP14.92□□□□□ -0.02
COL6A3-213ENST00000493475 CNOT7Q9UIV1 285 aaKnown RBP14.92□□□□□ -0.02
COL6A3-213ENST00000493475 COL4A5P29400 1685 aa14.92□□□□□ -0.02
COL6A3-213ENST00000493475 LBX1P52954 281 aa14.91□□□□□ -0.02
COL6A3-213ENST00000493475 RPS8P62241 208 aaKnown RBP14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms