RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 CCDC85AQ96PX6 553 aaPredicted RBP23.2■■□□□ 1.3
COL9A3-214ENST00000490398 PSMD1Q99460 953 aa23.2■■□□□ 1.3
COL9A3-214ENST00000490398 SEC31BQ9NQW1 1179 aa23.2■■□□□ 1.3
COL9A3-214ENST00000490398 POTECB2RU33 542 aa23.19■■□□□ 1.3
COL9A3-214ENST00000490398 BBOX1O75936 387 aa23.19■■□□□ 1.3
COL9A3-214ENST00000490398 DNAAF4Q8WXU2 420 aa23.19■■□□□ 1.3
COL9A3-214ENST00000490398 DICER1Q9UPY3 1922 aaKnown RBP23.18■■□□□ 1.3
COL9A3-214ENST00000490398 ZNF541Q9H0D2 1346 aa23.18■■□□□ 1.3
COL9A3-214ENST00000490398 DDNO94850 711 aaPredicted RBP23.18■■□□□ 1.3
COL9A3-214ENST00000490398 SP8Q8IXZ3 490 aa23.18■■□□□ 1.3
COL9A3-214ENST00000490398 NEXNQ0ZGT2 675 aa23.17■■□□□ 1.3
COL9A3-214ENST00000490398 TRMT2AQ8IZ69 625 aaKnown RBP23.17■■□□□ 1.3
COL9A3-214ENST00000490398 PDE8AO60658 829 aa23.16■■□□□ 1.3
COL9A3-214ENST00000490398 CEP350Q5VT06 3117 aa23.16■■□□□ 1.3
COL9A3-214ENST00000490398 CDHR2Q9BYE9 1310 aa23.15■■□□□ 1.3
COL9A3-214ENST00000490398 H7C1W4 665 aa23.15■■□□□ 1.3
COL9A3-214ENST00000490398 GCKRQ14397 625 aa23.15■■□□□ 1.3
COL9A3-214ENST00000490398 MRPL50Q8N5N7 158 aaKnown RBP23.15■■□□□ 1.3
COL9A3-214ENST00000490398 CASP7P55210 303 aa23.14■■□□□ 1.29
COL9A3-214ENST00000490398 UBE3BQ7Z3V4 1068 aa23.14■■□□□ 1.29
COL9A3-214ENST00000490398 TOMM70O94826 608 aa23.13■■□□□ 1.29
COL9A3-214ENST00000490398 BEND3Q5T5X7 828 aa23.13■■□□□ 1.29
COL9A3-214ENST00000490398 LINS1Q8NG48 757 aa23.13■■□□□ 1.29
COL9A3-214ENST00000490398 SSH1Q8WYL5 1049 aa23.13■■□□□ 1.29
COL9A3-214ENST00000490398 FZD9O00144 591 aa23.12■■□□□ 1.29
COL9A3-214ENST00000490398 AOC3Q16853 763 aa23.12■■□□□ 1.29
COL9A3-214ENST00000490398 DPY19L2Q6NUT2 758 aa23.12■■□□□ 1.29
COL9A3-214ENST00000490398 DPP8Q6V1X1 898 aaPredicted RBP23.12■■□□□ 1.29
COL9A3-214ENST00000490398 MPNDQ8N594 471 aa23.12■■□□□ 1.29
COL9A3-214ENST00000490398 BCL2L13Q9BXK5 485 aa23.12■■□□□ 1.29
COL9A3-214ENST00000490398 RTFDC1Q9BY42 306 aaPredicted RBP23.12■■□□□ 1.29
COL9A3-214ENST00000490398 DUOX1Q9NRD9 1551 aa23.12■■□□□ 1.29
COL9A3-214ENST00000490398 CTSWP56202 376 aa23.11■■□□□ 1.29
COL9A3-214ENST00000490398 RPS8P62241 208 aaKnown RBP23.11■■□□□ 1.29
COL9A3-214ENST00000490398 GPSM2P81274 684 aa23.11■■□□□ 1.29
COL9A3-214ENST00000490398 GRIPAP1Q4V328 841 aa23.11■■□□□ 1.29
COL9A3-214ENST00000490398 LARGE2Q8N3Y3 721 aa23.11■■□□□ 1.29
COL9A3-214ENST00000490398 TTLL11Q8NHH1 800 aa23.11■■□□□ 1.29
COL9A3-214ENST00000490398 WDR90Q96KV7 1748 aa23.11■■□□□ 1.29
COL9A3-214ENST00000490398 PPIP5K2O43314 1243 aa23.1■■□□□ 1.29
COL9A3-214ENST00000490398 VEGFAP15692 232 aaPredicted RBP23.1■■□□□ 1.29
COL9A3-214ENST00000490398 CCDC152Q4G0S7 254 aa23.1■■□□□ 1.29
COL9A3-214ENST00000490398 TMX4Q9H1E5 349 aaPredicted RBP23.1■■□□□ 1.29
COL9A3-214ENST00000490398 GREM2Q9H772 168 aa23.1■■□□□ 1.29
COL9A3-214ENST00000490398 LRRC37AA6NMS7 1700 aa23.09■■□□□ 1.29
COL9A3-214ENST00000490398 GPR101Q96P66 508 aaPredicted RBP23.09■■□□□ 1.29
COL9A3-214ENST00000490398 TMC4Q7Z404 712 aa23.08■■□□□ 1.29
COL9A3-214ENST00000490398 C16orf71Q8IYS4 520 aaPredicted RBP23.08■■□□□ 1.29
COL9A3-214ENST00000490398 JDP2Q8WYK2 163 aa23.08■■□□□ 1.29
COL9A3-214ENST00000490398 CACNA1FO60840 1977 aa23.08■■□□□ 1.29
COL9A3-214ENST00000490398 POTEIP0CG38 1075 aa23.07■■□□□ 1.28
COL9A3-214ENST00000490398 POTEJP0CG39 1038 aa23.07■■□□□ 1.28
COL9A3-214ENST00000490398 HSP90B1P14625 803 aaKnown RBP23.07■■□□□ 1.28
COL9A3-214ENST00000490398 SLC4A10Q6U841 1118 aa23.07■■□□□ 1.28
COL9A3-214ENST00000490398 RBM46Q8TBY0 533 aaKnown RBP23.07■■□□□ 1.28
COL9A3-214ENST00000490398 POLLQ9UGP5 575 aa23.07■■□□□ 1.28
COL9A3-214ENST00000490398 NSFL1CQ9UNZ2 370 aaKnown RBP23.07■■□□□ 1.28
COL9A3-214ENST00000490398 PLA2G12BQ9BX93 195 aa23.06■■□□□ 1.28
COL9A3-214ENST00000490398 WTIPA6NIX2 430 aaPredicted RBP23.05■■□□□ 1.28
COL9A3-214ENST00000490398 KIAA2012Q0VF49 1180 aa23.05■■□□□ 1.28
COL9A3-214ENST00000490398 EPHA10Q5JZY3 1008 aa23.05■■□□□ 1.28
COL9A3-214ENST00000490398 SUPT20HQ8NEM7 779 aa23.05■■□□□ 1.28
COL9A3-214ENST00000490398 L3MBTL3Q96JM7 780 aaPredicted RBP23.05■■□□□ 1.28
COL9A3-214ENST00000490398 GJA3Q9Y6H8 435 aa23.05■■□□□ 1.28
COL9A3-214ENST00000490398 CSF1RP07333 972 aa23.04■■□□□ 1.28
COL9A3-214ENST00000490398 HSPA6P17066 643 aa23.04■■□□□ 1.28
COL9A3-214ENST00000490398 FOXO4P98177 505 aa23.04■■□□□ 1.28
COL9A3-214ENST00000490398 FAM161AQ3B820 660 aa23.04■■□□□ 1.28
COL9A3-214ENST00000490398 NIM1KQ8IY84 436 aa23.04■■□□□ 1.28
COL9A3-214ENST00000490398 TBC1D16Q8TBP0 767 aa23.04■■□□□ 1.28
COL9A3-214ENST00000490398 LTBP1Q14766 1721 aa23.03■■□□□ 1.28
COL9A3-214ENST00000490398 RIMBP2O15034 1052 aa23.03■■□□□ 1.28
COL9A3-214ENST00000490398 HNRNPUQ00839 825 aaKnown RBP eCLIP23.03■■□□□ 1.28
COL9A3-214ENST00000490398 RTL9Q8NET4 1388 aa23.02■■□□□ 1.28
COL9A3-214ENST00000490398 YDJCA8MPS7 323 aa23.02■■□□□ 1.28
COL9A3-214ENST00000490398 EIF6P56537 245 aaKnown RBP23.02■■□□□ 1.28
COL9A3-214ENST00000490398 CXCL9Q07325 125 aa23.02■■□□□ 1.28
COL9A3-214ENST00000490398 ANKRD18AQ8IVF6 992 aa23.02■■□□□ 1.28
COL9A3-214ENST00000490398 GPC2Q8N158 579 aa23.02■■□□□ 1.28
COL9A3-214ENST00000490398 SRCIN1Q9C0H9 1055 aa23.02■■□□□ 1.28
COL9A3-214ENST00000490398 VPS33BQ9H267 617 aa23.02■■□□□ 1.28
COL9A3-214ENST00000490398 TAF1DQ9H5J8 278 aaPredicted RBP23.02■■□□□ 1.28
COL9A3-214ENST00000490398 SMC4Q9NTJ3 1288 aa23.02■■□□□ 1.28
COL9A3-214ENST00000490398 ZNRF3Q9ULT6 936 aa23.02■■□□□ 1.28
COL9A3-214ENST00000490398 C6orf229H3BNL8 230 aa23.01■■□□□ 1.27
COL9A3-214ENST00000490398 GRM8O00222 908 aa23.01■■□□□ 1.27
COL9A3-214ENST00000490398 ALDH1L2Q3SY69 923 aa23.01■■□□□ 1.27
COL9A3-214ENST00000490398 ALDH1L1O75891 902 aa23■■□□□ 1.27
COL9A3-214ENST00000490398 ITGA6P23229 1130 aa23■■□□□ 1.27
COL9A3-214ENST00000490398 KAZALD1Q96I82 304 aa23■■□□□ 1.27
COL9A3-214ENST00000490398 CDC5LQ99459 802 aaKnown RBP23■■□□□ 1.27
COL9A3-214ENST00000490398 PODXL2Q9NZ53 605 aa23■■□□□ 1.27
COL9A3-214ENST00000490398 RAD17O75943 681 aa22.99■■□□□ 1.27
COL9A3-214ENST00000490398 NBPF7P0C2Y1 421 aaPredicted RBP22.99■■□□□ 1.27
COL9A3-214ENST00000490398 SCNN1DP51172 638 aa22.99■■□□□ 1.27
COL9A3-214ENST00000490398 DOK7Q18PE1 504 aa22.99■■□□□ 1.27
COL9A3-214ENST00000490398 WASHC4Q2M389 1173 aa22.99■■□□□ 1.27
COL9A3-214ENST00000490398 DBNDD1Q9H9R9 158 aa22.99■■□□□ 1.27
COL9A3-214ENST00000490398 KCNQ5Q9NR82 932 aa22.99■■□□□ 1.27
COL9A3-214ENST00000490398 MINPP1Q9UNW1 487 aa22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms