RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 SLC10A5Q5PT55 438 aa14.18□□□□□ -0.14
C9orf3-220ENST00000489318 KLHDC4Q8TBB5 520 aa14.18□□□□□ -0.14
C9orf3-220ENST00000489318 PNPLA7Q6ZV29 1317 aa14.17□□□□□ -0.14
C9orf3-220ENST00000489318 AK9Q5TCS8 1911 aa14.17□□□□□ -0.14
C9orf3-220ENST00000489318 COL4A1P02462 1669 aa14.17□□□□□ -0.14
C9orf3-220ENST00000489318 ZNF609O15014 1411 aa14.17□□□□□ -0.14
C9orf3-220ENST00000489318 ANKRD31Q8N7Z5 1873 aa14.17□□□□□ -0.14
C9orf3-220ENST00000489318 APBB1O00213 710 aa14.17□□□□□ -0.14
C9orf3-220ENST00000489318 BAG6P46379 1132 aa14.17□□□□□ -0.14
C9orf3-220ENST00000489318 G3BP1Q13283 466 aaKnown RBP eCLIP14.17□□□□□ -0.14
C9orf3-220ENST00000489318 EZH2Q15910 746 aaKnown RBP14.17□□□□□ -0.14
C9orf3-220ENST00000489318 C8orf34Q49A92 452 aa14.17□□□□□ -0.14
C9orf3-220ENST00000489318 ATG9AQ7Z3C6 839 aa14.17□□□□□ -0.14
C9orf3-220ENST00000489318 OTUD7AQ8TE49 926 aaPredicted RBP14.17□□□□□ -0.14
C9orf3-220ENST00000489318 SETDB2Q96T68 719 aa14.17□□□□□ -0.14
C9orf3-220ENST00000489318 STAP2Q9UGK3 403 aa14.17□□□□□ -0.14
C9orf3-220ENST00000489318 EYA2O00167 538 aa14.16□□□□□ -0.14
C9orf3-220ENST00000489318 MX1P20591 662 aa14.16□□□□□ -0.14
C9orf3-220ENST00000489318 IL15P40933 162 aaPredicted RBP14.16□□□□□ -0.14
C9orf3-220ENST00000489318 PDE1AP54750 535 aa14.16□□□□□ -0.14
C9orf3-220ENST00000489318 IFIT5Q13325 482 aaKnown RBP14.16□□□□□ -0.14
C9orf3-220ENST00000489318 OS9Q13438 667 aaPredicted RBP14.16□□□□□ -0.14
C9orf3-220ENST00000489318 NFIXQ14938 502 aa14.16□□□□□ -0.14
C9orf3-220ENST00000489318 CCDC57Q2TAC2 916 aa14.16□□□□□ -0.14
C9orf3-220ENST00000489318 TTC22Q5TAA0 569 aa14.16□□□□□ -0.14
C9orf3-220ENST00000489318 CCDC125Q86Z20 511 aa14.16□□□□□ -0.14
C9orf3-220ENST00000489318 C16orf71Q8IYS4 520 aaPredicted RBP14.16□□□□□ -0.14
C9orf3-220ENST00000489318 GREM2Q9H772 168 aa14.16□□□□□ -0.14
C9orf3-220ENST00000489318 CHMP3Q9Y3E7 222 aa14.16□□□□□ -0.14
C9orf3-220ENST00000489318 ITGA6P23229 1130 aa14.15□□□□□ -0.14
C9orf3-220ENST00000489318 TM4SF1P30408 202 aa14.15□□□□□ -0.14
C9orf3-220ENST00000489318 EN1Q05925 392 aaPredicted RBP14.15□□□□□ -0.14
C9orf3-220ENST00000489318 SF3B3Q15393 1217 aaKnown RBP14.15□□□□□ -0.14
C9orf3-220ENST00000489318 ERFEQ4G0M1 354 aa14.15□□□□□ -0.14
C9orf3-220ENST00000489318 NUTM1Q86Y26 1132 aa14.15□□□□□ -0.14
C9orf3-220ENST00000489318 CLASRPQ8N2M8 674 aaKnown RBP14.15□□□□□ -0.14
C9orf3-220ENST00000489318 BACH2Q9BYV9 841 aa14.15□□□□□ -0.14
C9orf3-220ENST00000489318 SIL1Q9H173 461 aa14.15□□□□□ -0.14
C9orf3-220ENST00000489318 ANO8Q9HCE9 1232 aaPredicted RBP14.15□□□□□ -0.14
C9orf3-220ENST00000489318 IL1RAPL2Q9NP60 686 aa14.15□□□□□ -0.14
C9orf3-220ENST00000489318 GPR108Q9NPR9 543 aa14.15□□□□□ -0.14
C9orf3-220ENST00000489318 TSHZ2Q9NRE2 1034 aa14.15□□□□□ -0.14
C9orf3-220ENST00000489318 TFCP2L1Q9NZI6 479 aa14.15□□□□□ -0.14
C9orf3-220ENST00000489318 TTC41PQ6P2S7 1318 aa14.15□□□□□ -0.15
C9orf3-220ENST00000489318 ANKRD18BA2A2Z9 1011 aa14.14□□□□□ -0.15
C9orf3-220ENST00000489318 HCLS1P14317 486 aaPredicted RBP14.14□□□□□ -0.15
C9orf3-220ENST00000489318 GSPT1P15170 499 aaKnown RBP14.14□□□□□ -0.15
C9orf3-220ENST00000489318 SF3B2Q13435 895 aaKnown RBP14.14□□□□□ -0.15
C9orf3-220ENST00000489318 SLC15A2Q16348 729 aa14.14□□□□□ -0.15
C9orf3-220ENST00000489318 CCDC152Q4G0S7 254 aa14.14□□□□□ -0.15
C9orf3-220ENST00000489318 TPTE2Q6XPS3 522 aa14.14□□□□□ -0.15
C9orf3-220ENST00000489318 BICDL1Q6ZP65 573 aa14.14□□□□□ -0.15
C9orf3-220ENST00000489318 NBPF5PQ86XG9 351 aaPredicted RBP14.14□□□□□ -0.15
C9orf3-220ENST00000489318 COL23A1Q86Y22 540 aaPredicted RBP14.14□□□□□ -0.15
C9orf3-220ENST00000489318 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.14□□□□□ -0.15
C9orf3-220ENST00000489318 LRRC37AA6NMS7 1700 aa14.13□□□□□ -0.15
C9orf3-220ENST00000489318 TAF1P21675 1872 aa14.13□□□□□ -0.15
C9orf3-220ENST00000489318 FAM177BA6PVY3 158 aa14.13□□□□□ -0.15
C9orf3-220ENST00000489318 COL11A2P13942 1736 aaPredicted RBP14.12□□□□□ -0.15
C9orf3-220ENST00000489318 POLRMTO00411 1230 aaKnown RBP14.12□□□□□ -0.15
C9orf3-220ENST00000489318 DDR1Q08345 913 aa14.12□□□□□ -0.15
C9orf3-220ENST00000489318 LRRC24Q50LG9 513 aa14.12□□□□□ -0.15
C9orf3-220ENST00000489318 TNNI3KQ59H18 835 aa14.12□□□□□ -0.15
C9orf3-220ENST00000489318 PI4K2BQ8TCG2 481 aa14.12□□□□□ -0.15
C9orf3-220ENST00000489318 EAF2Q96CJ1 260 aaPredicted RBP14.12□□□□□ -0.15
C9orf3-220ENST00000489318 ZNF594Q96JF6 807 aaPredicted RBP14.12□□□□□ -0.15
C9orf3-220ENST00000489318 FPGT-TNNI3KV9GXZ4 949 aa14.12□□□□□ -0.15
C9orf3-220ENST00000489318 TFCP2Q12800 502 aa14.11□□□□□ -0.15
C9orf3-220ENST00000489318 PRR5LQ6MZQ0 368 aa14.11□□□□□ -0.15
C9orf3-220ENST00000489318 C3orf67Q6ZVT6 689 aa14.11□□□□□ -0.15
C9orf3-220ENST00000489318 AACSQ86V21 672 aa14.11□□□□□ -0.15
C9orf3-220ENST00000489318 NLGN1Q8N2Q7 840 aa14.11□□□□□ -0.15
C9orf3-220ENST00000489318 VGLL2Q8N8G2 317 aa14.11□□□□□ -0.15
C9orf3-220ENST00000489318 CNBD1Q8NA66 436 aa14.11□□□□□ -0.15
C9orf3-220ENST00000489318 PUS3Q9BZE2 481 aaKnown RBP14.11□□□□□ -0.15
C9orf3-220ENST00000489318 STK32BQ9NY57 414 aa14.11□□□□□ -0.15
C9orf3-220ENST00000489318 RIPOR2Q9Y4F9 1068 aa14.11□□□□□ -0.15
C9orf3-220ENST00000489318 DEFB132Q7Z7B7 95 aa14.1□□□□□ -0.15
C9orf3-220ENST00000489318 CCDC85AQ96PX6 553 aaPredicted RBP14.1□□□□□ -0.15
C9orf3-220ENST00000489318 DLEC1Q9Y238 1755 aa14.09□□□□□ -0.15
C9orf3-220ENST00000489318 SERPINB2P05120 415 aa14.09□□□□□ -0.15
C9orf3-220ENST00000489318 IFIT2P09913 472 aaKnown RBP14.09□□□□□ -0.15
C9orf3-220ENST00000489318 GTF2E1P29083 439 aaPredicted RBP14.09□□□□□ -0.15
C9orf3-220ENST00000489318 CRY2Q49AN0 593 aa14.09□□□□□ -0.15
C9orf3-220ENST00000489318 TAF7LQ5H9L4 462 aa14.09□□□□□ -0.15
C9orf3-220ENST00000489318 GPATCH3Q96I76 525 aa14.09□□□□□ -0.15
C9orf3-220ENST00000489318 NLRP3Q96P20 1036 aa14.09□□□□□ -0.15
C9orf3-220ENST00000489318 CDC5LQ99459 802 aaKnown RBP14.09□□□□□ -0.15
C9orf3-220ENST00000489318 ECHDC1Q9NTX5 307 aa14.09□□□□□ -0.15
C9orf3-220ENST00000489318 DBNLQ9UJU6 430 aaKnown RBP14.09□□□□□ -0.15
C9orf3-220ENST00000489318 MROH5Q6ZUA9 1318 aa14.09□□□□□ -0.15
C9orf3-220ENST00000489318 LTBP1Q14766 1721 aa14.08□□□□□ -0.16
C9orf3-220ENST00000489318 KLRG2A4D1S0 409 aaPredicted RBP14.08□□□□□ -0.16
C9orf3-220ENST00000489318 GLRX3O76003 335 aaKnown RBP14.08□□□□□ -0.16
C9orf3-220ENST00000489318 LDHAL6AQ6ZMR3 332 aa14.08□□□□□ -0.16
C9orf3-220ENST00000489318 SEC31BQ9NQW1 1179 aa14.08□□□□□ -0.16
C9orf3-220ENST00000489318 TLR7Q9NYK1 1049 aaKnown RBP14.08□□□□□ -0.16
C9orf3-220ENST00000489318 KIF13BQ9NQT8 1826 aa14.08□□□□□ -0.16
C9orf3-220ENST00000489318 ERC2O15083 957 aa14.07□□□□□ -0.16
C9orf3-220ENST00000489318 SDSP20132 328 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms