RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 SRGNP10124 158 aa24.24■■□□□ 1.47
CCM2-216ENST00000488727 KCNA3P22001 575 aa24.24■■□□□ 1.47
CCM2-216ENST00000488727 C2CD5Q86YS7 1000 aa24.24■■□□□ 1.47
CCM2-216ENST00000488727 KAZALD1Q96I82 304 aa24.24■■□□□ 1.47
CCM2-216ENST00000488727 SUCLG2Q96I99 432 aa24.24■■□□□ 1.47
CCM2-216ENST00000488727 PLA2G12BQ9BX93 195 aa24.24■■□□□ 1.47
CCM2-216ENST00000488727 GOLGB1Q14789 3259 aaKnown RBP24.24■■□□□ 1.47
CCM2-216ENST00000488727 MVPQ14764 893 aaKnown RBP24.24■■□□□ 1.47
CCM2-216ENST00000488727 TAF1P21675 1872 aa24.23■■□□□ 1.47
CCM2-216ENST00000488727 H0YIN7 160 aa24.23■■□□□ 1.47
CCM2-216ENST00000488727 EPHA10Q5JZY3 1008 aa24.23■■□□□ 1.47
CCM2-216ENST00000488727 CACNA1SQ13698 1873 aa24.23■■□□□ 1.47
CCM2-216ENST00000488727 CTSWP56202 376 aa24.22■■□□□ 1.47
CCM2-216ENST00000488727 FOXO4P98177 505 aa24.22■■□□□ 1.47
CCM2-216ENST00000488727 SF3B3Q15393 1217 aaKnown RBP24.22■■□□□ 1.47
CCM2-216ENST00000488727 ZBTB7BO15156 539 aaPredicted RBP24.21■■□□□ 1.47
CCM2-216ENST00000488727 UBTFL1P0CB47 393 aaPredicted RBP24.21■■□□□ 1.47
CCM2-216ENST00000488727 HSP90B1P14625 803 aaKnown RBP24.21■■□□□ 1.47
CCM2-216ENST00000488727 COL4A1P02462 1669 aa24.21■■□□□ 1.47
CCM2-216ENST00000488727 TTLL11Q8NHH1 800 aa24.21■■□□□ 1.47
CCM2-216ENST00000488727 PDZRN3Q9UPQ7 1066 aa24.21■■□□□ 1.47
CCM2-216ENST00000488727 AAMPQ13685 434 aa24.2■■□□□ 1.46
CCM2-216ENST00000488727 CCDC85AQ96PX6 553 aaPredicted RBP24.2■■□□□ 1.46
CCM2-216ENST00000488727 GNAI3P08754 354 aa24.19■■□□□ 1.46
CCM2-216ENST00000488727 MASTLQ96GX5 879 aa24.19■■□□□ 1.46
CCM2-216ENST00000488727 BICC1Q9H694 974 aaKnown RBP24.19■■□□□ 1.46
CCM2-216ENST00000488727 WWC3Q9ULE0 1092 aa24.19■■□□□ 1.46
CCM2-216ENST00000488727 NPR1P16066 1061 aa24.18■■□□□ 1.46
CCM2-216ENST00000488727 RPGRQ92834 1020 aaKnown RBP24.18■■□□□ 1.46
CCM2-216ENST00000488727 DDX19BQ9UMR2 479 aa24.18■■□□□ 1.46
CCM2-216ENST00000488727 LRRFIP2Q9Y608 721 aaKnown RBP24.18■■□□□ 1.46
CCM2-216ENST00000488727 CSF1RP07333 972 aa24.18■■□□□ 1.46
CCM2-216ENST00000488727 HOXA10P31260 410 aaPredicted RBP24.18■■□□□ 1.46
CCM2-216ENST00000488727 ANKRD44Q8N8A2 993 aa24.18■■□□□ 1.46
CCM2-216ENST00000488727 ZNF622Q969S3 477 aaKnown RBP eCLIP24.18■■□□□ 1.46
CCM2-216ENST00000488727 SLX4Q8IY92 1834 aa24.17■■□□□ 1.46
CCM2-216ENST00000488727 STYK1Q6J9G0 422 aa24.17■■□□□ 1.46
CCM2-216ENST00000488727 LMBR1LQ6UX01 489 aa24.17■■□□□ 1.46
CCM2-216ENST00000488727 GREM2Q9H772 168 aa24.17■■□□□ 1.46
CCM2-216ENST00000488727 RABL6Q3YEC7 729 aaPredicted RBP24.16■■□□□ 1.46
CCM2-216ENST00000488727 CCDC152Q4G0S7 254 aa24.16■■□□□ 1.46
CCM2-216ENST00000488727 BACH2Q9BYV9 841 aa24.16■■□□□ 1.46
CCM2-216ENST00000488727 PDE4AP27815 886 aa24.15■■□□□ 1.46
CCM2-216ENST00000488727 SEC31BQ9NQW1 1179 aa24.15■■□□□ 1.46
CCM2-216ENST00000488727 PIM2Q9P1W9 311 aa24.15■■□□□ 1.46
CCM2-216ENST00000488727 FAM161AQ3B820 660 aa24.15■■□□□ 1.46
CCM2-216ENST00000488727 RBM17Q96I25 401 aaKnown RBP24.15■■□□□ 1.46
CCM2-216ENST00000488727 CRAMP1Q96RY5 1269 aa24.15■■□□□ 1.46
CCM2-216ENST00000488727 DDX46Q7L014 1031 aaKnown RBP24.14■■□□□ 1.45
CCM2-216ENST00000488727 C1orf115Q9H7X2 142 aa24.14■■□□□ 1.45
CCM2-216ENST00000488727 RTL9Q8NET4 1388 aa24.14■■□□□ 1.45
CCM2-216ENST00000488727 SPEF2Q9C093 1822 aa24.14■■□□□ 1.45
CCM2-216ENST00000488727 GNAI2P04899 355 aa24.13■■□□□ 1.45
CCM2-216ENST00000488727 ZBTB40Q9NUA8 1239 aa24.13■■□□□ 1.45
CCM2-216ENST00000488727 ANP32AP39687 249 aaKnown RBP24.13■■□□□ 1.45
CCM2-216ENST00000488727 PRPF40BQ6NWY9 871 aaKnown RBP24.13■■□□□ 1.45
CCM2-216ENST00000488727 TTLL6Q8N841 843 aa24.13■■□□□ 1.45
CCM2-216ENST00000488727 CELF1Q92879 486 aaKnown RBP24.13■■□□□ 1.45
CCM2-216ENST00000488727 CNKSR1Q969H4 720 aa24.13■■□□□ 1.45
CCM2-216ENST00000488727 ARFGEF1Q9Y6D6 1849 aa24.12■■□□□ 1.45
CCM2-216ENST00000488727 ITGA6P23229 1130 aa24.12■■□□□ 1.45
CCM2-216ENST00000488727 ALDH1B1P30837 517 aa24.12■■□□□ 1.45
CCM2-216ENST00000488727 HDAC5Q9UQL6 1122 aa24.12■■□□□ 1.45
CCM2-216ENST00000488727 CHMP3Q9Y3E7 222 aa24.12■■□□□ 1.45
CCM2-216ENST00000488727 GRAPQ13588 217 aa24.11■■□□□ 1.45
CCM2-216ENST00000488727 SLC51AQ86UW1 340 aa24.11■■□□□ 1.45
CCM2-216ENST00000488727 GRAPLQ8TC17 118 aaPredicted RBP24.11■■□□□ 1.45
CCM2-216ENST00000488727 DALRD3Q5D0E6 543 aaKnown RBP24.1■■□□□ 1.45
CCM2-216ENST00000488727 BCS1LQ9Y276 419 aa24.1■■□□□ 1.45
CCM2-216ENST00000488727 IFIT5Q13325 482 aaKnown RBP24.08■■□□□ 1.45
CCM2-216ENST00000488727 LRRC37AA6NMS7 1700 aa24.08■■□□□ 1.44
CCM2-216ENST00000488727 YBX3P16989 372 aaKnown RBP eCLIP24.07■■□□□ 1.442e-6■■□□□ 12.1
CCM2-216ENST00000488727 MTX1Q13505 466 aa24.07■■□□□ 1.44
CCM2-216ENST00000488727 CHMP4BQ9H444 224 aaKnown RBP24.07■■□□□ 1.44
CCM2-216ENST00000488727 ANKRD18BA2A2Z9 1011 aa24.07■■□□□ 1.44
CCM2-216ENST00000488727 PPEF1O14829 653 aaPredicted RBP24.07■■□□□ 1.44
CCM2-216ENST00000488727 RPS8P62241 208 aaKnown RBP24.07■■□□□ 1.44
CCM2-216ENST00000488727 CCDC57Q2TAC2 916 aa24.07■■□□□ 1.44
CCM2-216ENST00000488727 OLFM4Q6UX06 510 aa24.07■■□□□ 1.44
CCM2-216ENST00000488727 C7orf43Q8WVR3 580 aa24.07■■□□□ 1.44
CCM2-216ENST00000488727 CDC5LQ99459 802 aaKnown RBP24.07■■□□□ 1.44
CCM2-216ENST00000488727 UTRNP46939 3433 aa24.06■■□□□ 1.44
CCM2-216ENST00000488727 ZNF594Q96JF6 807 aaPredicted RBP24.06■■□□□ 1.44
CCM2-216ENST00000488727 ZNF219Q9P2Y4 722 aaPredicted RBP24.06■■□□□ 1.44
CCM2-216ENST00000488727 PNMA6EA0A0J9YXQ4 647 aa24.05■■□□□ 1.44
CCM2-216ENST00000488727 C21orf2O43822 256 aa24.05■■□□□ 1.44
CCM2-216ENST00000488727 BBOX1O75936 387 aa24.05■■□□□ 1.44
CCM2-216ENST00000488727 RFX5P48382 616 aaPredicted RBP24.05■■□□□ 1.44
CCM2-216ENST00000488727 ANKRD18AQ8IVF6 992 aa24.05■■□□□ 1.44
CCM2-216ENST00000488727 IPO9Q96P70 1041 aaKnown RBP24.05■■□□□ 1.44
CCM2-216ENST00000488727 CEP85Q6P2H3 762 aa24.04■■□□□ 1.44
CCM2-216ENST00000488727 ERICH6Q7L0X2 663 aa24.04■■□□□ 1.44
CCM2-216ENST00000488727 KLHDC4Q8TBB5 520 aa24.04■■□□□ 1.44
CCM2-216ENST00000488727 SRGAP3O43295 1099 aa24.04■■□□□ 1.44
CCM2-216ENST00000488727 SKAP1Q86WV1 359 aa24.03■■□□□ 1.44
CCM2-216ENST00000488727 ATP6V0A2Q9Y487 856 aa24.03■■□□□ 1.44
CCM2-216ENST00000488727 ATP8B2P98198 1209 aa24.02■■□□□ 1.44
CCM2-216ENST00000488727 SNED1Q8TER0 1413 aa24.02■■□□□ 1.44
CCM2-216ENST00000488727 FER1L6Q2WGJ9 1857 aa24.01■■□□□ 1.43
CCM2-216ENST00000488727 IGHMBP2P38935 993 aaKnown RBP24.01■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 468.3 ms