RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 GLTPD2A6NH11 291 aa17.78■□□□□ 0.44
SYNE1-226ENST00000488376 IARSP41252 1262 aaKnown RBP17.78■□□□□ 0.44
SYNE1-226ENST00000488376 NEXNQ0ZGT2 675 aa17.78■□□□□ 0.44
SYNE1-226ENST00000488376 PSMD1Q99460 953 aa17.78■□□□□ 0.44
SYNE1-226ENST00000488376 KDM2BQ8NHM5 1336 aa17.77■□□□□ 0.44
SYNE1-226ENST00000488376 ZNF541Q9H0D2 1346 aa17.77■□□□□ 0.44
SYNE1-226ENST00000488376 GCKRQ14397 625 aa17.77■□□□□ 0.44
SYNE1-226ENST00000488376 UBE3BQ7Z3V4 1068 aa17.77■□□□□ 0.44
SYNE1-226ENST00000488376 CDHR2Q9BYE9 1310 aa17.76■□□□□ 0.43
SYNE1-226ENST00000488376 POTECB2RU33 542 aa17.76■□□□□ 0.43
SYNE1-226ENST00000488376 BBOX1O75936 387 aa17.76■□□□□ 0.43
SYNE1-226ENST00000488376 DDNO94850 711 aaPredicted RBP17.76■□□□□ 0.43
SYNE1-226ENST00000488376 CASP7P55210 303 aa17.76■□□□□ 0.43
SYNE1-226ENST00000488376 CC2D2BQ6DHV5 1058 aa17.76■□□□□ 0.43
SYNE1-226ENST00000488376 SP8Q8IXZ3 490 aa17.76■□□□□ 0.43
SYNE1-226ENST00000488376 MRPL50Q8N5N7 158 aaKnown RBP17.76■□□□□ 0.43
SYNE1-226ENST00000488376 BCL2L13Q9BXK5 485 aa17.76■□□□□ 0.43
SYNE1-226ENST00000488376 DUOX1Q9NRD9 1551 aa17.75■□□□□ 0.43
SYNE1-226ENST00000488376 DICER1Q9UPY3 1922 aaKnown RBP17.75■□□□□ 0.43
SYNE1-226ENST00000488376 H7C1W4 665 aa17.75■□□□□ 0.43
SYNE1-226ENST00000488376 PDE8AO60658 829 aa17.75■□□□□ 0.43
SYNE1-226ENST00000488376 BEND3Q5T5X7 828 aa17.75■□□□□ 0.43
SYNE1-226ENST00000488376 LINS1Q8NG48 757 aa17.75■□□□□ 0.43
SYNE1-226ENST00000488376 SSH1Q8WYL5 1049 aa17.75■□□□□ 0.43
SYNE1-226ENST00000488376 CTSWP56202 376 aa17.74■□□□□ 0.43
SYNE1-226ENST00000488376 AOC3Q16853 763 aa17.74■□□□□ 0.43
SYNE1-226ENST00000488376 LRRC37AA6NMS7 1700 aa17.73■□□□□ 0.43
SYNE1-226ENST00000488376 DPP8Q6V1X1 898 aaPredicted RBP17.73■□□□□ 0.43
SYNE1-226ENST00000488376 RTFDC1Q9BY42 306 aaPredicted RBP17.73■□□□□ 0.43
SYNE1-226ENST00000488376 FZD9O00144 591 aa17.72■□□□□ 0.43
SYNE1-226ENST00000488376 RPS8P62241 208 aaKnown RBP17.72■□□□□ 0.43
SYNE1-226ENST00000488376 GPSM2P81274 684 aa17.72■□□□□ 0.43
SYNE1-226ENST00000488376 CCDC152Q4G0S7 254 aa17.72■□□□□ 0.43
SYNE1-226ENST00000488376 MPNDQ8N594 471 aa17.72■□□□□ 0.43
SYNE1-226ENST00000488376 TTLL11Q8NHH1 800 aa17.72■□□□□ 0.43
SYNE1-226ENST00000488376 GREM2Q9H772 168 aa17.72■□□□□ 0.43
SYNE1-226ENST00000488376 PPIP5K2O43314 1243 aa17.71■□□□□ 0.43
SYNE1-226ENST00000488376 DPY19L2Q6NUT2 758 aa17.71■□□□□ 0.43
SYNE1-226ENST00000488376 SLC4A10Q6U841 1118 aa17.71■□□□□ 0.43
SYNE1-226ENST00000488376 LARGE2Q8N3Y3 721 aa17.71■□□□□ 0.43
SYNE1-226ENST00000488376 GPR101Q96P66 508 aaPredicted RBP17.71■□□□□ 0.43
SYNE1-226ENST00000488376 WDR90Q96KV7 1748 aa17.71■□□□□ 0.43
SYNE1-226ENST00000488376 TOMM70O94826 608 aa17.7■□□□□ 0.42
SYNE1-226ENST00000488376 GRIPAP1Q4V328 841 aa17.7■□□□□ 0.42
SYNE1-226ENST00000488376 POLLQ9UGP5 575 aa17.7■□□□□ 0.42
SYNE1-226ENST00000488376 LTBP1Q14766 1721 aa17.69■□□□□ 0.42
SYNE1-226ENST00000488376 WTIPA6NIX2 430 aaPredicted RBP17.69■□□□□ 0.42
SYNE1-226ENST00000488376 HSP90B1P14625 803 aaKnown RBP17.69■□□□□ 0.42
SYNE1-226ENST00000488376 VEGFAP15692 232 aaPredicted RBP17.69■□□□□ 0.42
SYNE1-226ENST00000488376 HNRNPUQ00839 825 aaKnown RBP eCLIP17.69■□□□□ 0.42
SYNE1-226ENST00000488376 JDP2Q8WYK2 163 aa17.69■□□□□ 0.42
SYNE1-226ENST00000488376 TMX4Q9H1E5 349 aaPredicted RBP17.69■□□□□ 0.42
SYNE1-226ENST00000488376 NSFL1CQ9UNZ2 370 aaKnown RBP17.69■□□□□ 0.42
SYNE1-226ENST00000488376 CACNA1FO60840 1977 aa17.68■□□□□ 0.42
SYNE1-226ENST00000488376 POTEIP0CG38 1075 aa17.68■□□□□ 0.42
SYNE1-226ENST00000488376 POTEJP0CG39 1038 aa17.68■□□□□ 0.42
SYNE1-226ENST00000488376 FAM161AQ3B820 660 aa17.68■□□□□ 0.42
SYNE1-226ENST00000488376 EPHA10Q5JZY3 1008 aa17.68■□□□□ 0.42
SYNE1-226ENST00000488376 TMC4Q7Z404 712 aa17.68■□□□□ 0.42
SYNE1-226ENST00000488376 PLA2G12BQ9BX93 195 aa17.68■□□□□ 0.42
SYNE1-226ENST00000488376 FOXO4P98177 505 aa17.67■□□□□ 0.42
SYNE1-226ENST00000488376 KIAA2012Q0VF49 1180 aa17.67■□□□□ 0.42
SYNE1-226ENST00000488376 NIM1KQ8IY84 436 aa17.67■□□□□ 0.42
SYNE1-226ENST00000488376 C16orf71Q8IYS4 520 aaPredicted RBP17.67■□□□□ 0.42
SYNE1-226ENST00000488376 RBM46Q8TBY0 533 aaKnown RBP17.67■□□□□ 0.42
SYNE1-226ENST00000488376 L3MBTL3Q96JM7 780 aaPredicted RBP17.67■□□□□ 0.42
SYNE1-226ENST00000488376 SMC4Q9NTJ3 1288 aa17.67■□□□□ 0.42
SYNE1-226ENST00000488376 RTL9Q8NET4 1388 aa17.66■□□□□ 0.42
SYNE1-226ENST00000488376 ANKRD18AQ8IVF6 992 aa17.66■□□□□ 0.42
SYNE1-226ENST00000488376 SUPT20HQ8NEM7 779 aa17.66■□□□□ 0.42
SYNE1-226ENST00000488376 SRCIN1Q9C0H9 1055 aa17.66■□□□□ 0.42
SYNE1-226ENST00000488376 GJA3Q9Y6H8 435 aa17.66■□□□□ 0.42
SYNE1-226ENST00000488376 YDJCA8MPS7 323 aa17.65■□□□□ 0.42
SYNE1-226ENST00000488376 C6orf229H3BNL8 230 aa17.65■□□□□ 0.42
SYNE1-226ENST00000488376 GRM8O00222 908 aa17.65■□□□□ 0.42
SYNE1-226ENST00000488376 RIMBP2O15034 1052 aa17.65■□□□□ 0.42
SYNE1-226ENST00000488376 CSF1RP07333 972 aa17.65■□□□□ 0.42
SYNE1-226ENST00000488376 ITGA6P23229 1130 aa17.65■□□□□ 0.42
SYNE1-226ENST00000488376 ALDH1L2Q3SY69 923 aa17.65■□□□□ 0.42
SYNE1-226ENST00000488376 TBC1D16Q8TBP0 767 aa17.65■□□□□ 0.42
SYNE1-226ENST00000488376 PTPRCP08575 1304 aa17.65■□□□□ 0.42
SYNE1-226ENST00000488376 ALDH1L1O75891 902 aa17.64■□□□□ 0.41
SYNE1-226ENST00000488376 NBPF7P0C2Y1 421 aaPredicted RBP17.64■□□□□ 0.41
SYNE1-226ENST00000488376 EIF6P56537 245 aaKnown RBP17.64■□□□□ 0.41
SYNE1-226ENST00000488376 GPC2Q8N158 579 aa17.64■□□□□ 0.41
SYNE1-226ENST00000488376 KAZALD1Q96I82 304 aa17.64■□□□□ 0.41
SYNE1-226ENST00000488376 UFL1O94874 794 aa17.63■□□□□ 0.41
SYNE1-226ENST00000488376 HSPA6P17066 643 aa17.63■□□□□ 0.41
SYNE1-226ENST00000488376 RARSP54136 660 aaKnown RBP17.63■□□□□ 0.41
SYNE1-226ENST00000488376 CXCL9Q07325 125 aa17.63■□□□□ 0.41
SYNE1-226ENST00000488376 DOK7Q18PE1 504 aa17.63■□□□□ 0.41
SYNE1-226ENST00000488376 WASHC4Q2M389 1173 aa17.63■□□□□ 0.41
SYNE1-226ENST00000488376 SUCLG2Q96I99 432 aa17.63■□□□□ 0.41
SYNE1-226ENST00000488376 CDC5LQ99459 802 aaKnown RBP17.63■□□□□ 0.41
SYNE1-226ENST00000488376 VPS33BQ9H267 617 aa17.63■□□□□ 0.41
SYNE1-226ENST00000488376 TAF1DQ9H5J8 278 aaPredicted RBP17.63■□□□□ 0.41
SYNE1-226ENST00000488376 DBNDD1Q9H9R9 158 aa17.63■□□□□ 0.41
SYNE1-226ENST00000488376 KCNQ5Q9NR82 932 aa17.63■□□□□ 0.41
SYNE1-226ENST00000488376 PODXL2Q9NZ53 605 aa17.63■□□□□ 0.41
SYNE1-226ENST00000488376 C9orf78Q9NZ63 289 aaPredicted RBP17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms