RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 CSRNP1Q96S65 589 aa12.37□□□□□ -0.43
COL17A1-207ENST00000488320 ZBTB3Q9H5J0 574 aa12.37□□□□□ -0.43
COL17A1-207ENST00000488320 HPS5Q9UPZ3 1129 aa12.37□□□□□ -0.43
COL17A1-207ENST00000488320 POLR2AP24928 1970 aaKnown RBP12.37□□□□□ -0.43
COL17A1-207ENST00000488320 SHTN1A0MZ66 631 aa12.36□□□□□ -0.43
COL17A1-207ENST00000488320 MYL6BP14649 208 aa12.36□□□□□ -0.43
COL17A1-207ENST00000488320 RBM26Q5T8P6 1007 aaKnown RBP12.36□□□□□ -0.43
COL17A1-207ENST00000488320 TTLL7Q6ZT98 887 aa12.36□□□□□ -0.43
COL17A1-207ENST00000488320 SAMD7Q7Z3H4 446 aa12.36□□□□□ -0.43
COL17A1-207ENST00000488320 BBOX1O75936 387 aa12.35□□□□□ -0.43
COL17A1-207ENST00000488320 KIAA2012Q0VF49 1180 aa12.35□□□□□ -0.43
COL17A1-207ENST00000488320 DCTN1Q14203 1278 aa12.35□□□□□ -0.43
COL17A1-207ENST00000488320 TAF7Q15545 349 aaPredicted RBP12.35□□□□□ -0.43
COL17A1-207ENST00000488320 PKN2Q16513 984 aaKnown RBP12.35□□□□□ -0.43
COL17A1-207ENST00000488320 TBC1D10BQ4KMP7 808 aaPredicted RBP12.35□□□□□ -0.43
COL17A1-207ENST00000488320 C3orf67Q6ZVT6 689 aa12.35□□□□□ -0.43
COL17A1-207ENST00000488320 SP8Q8IXZ3 490 aa12.35□□□□□ -0.43
COL17A1-207ENST00000488320 RTFDC1Q9BY42 306 aaPredicted RBP12.35□□□□□ -0.43
COL17A1-207ENST00000488320 MIS18AQ9NYP9 233 aa12.35□□□□□ -0.43
COL17A1-207ENST00000488320 ZBTB12Q9Y330 459 aaPredicted RBP12.35□□□□□ -0.43
COL17A1-207ENST00000488320 RIC1Q4ADV7 1423 aa12.35□□□□□ -0.43
COL17A1-207ENST00000488320 UBN2Q6ZU65 1347 aa12.35□□□□□ -0.43
COL17A1-207ENST00000488320 ADM5C9JUS6 153 aa12.34□□□□□ -0.43
COL17A1-207ENST00000488320 REM2Q8IYK8 340 aaPredicted RBP12.34□□□□□ -0.43
COL17A1-207ENST00000488320 ABCC4O15439 1325 aa12.34□□□□□ -0.43
COL17A1-207ENST00000488320 NTSR2O95665 410 aa12.33□□□□□ -0.44
COL17A1-207ENST00000488320 SLC10A3P09131 477 aa12.33□□□□□ -0.44
COL17A1-207ENST00000488320 PARP10Q53GL7 1025 aa12.33□□□□□ -0.44
COL17A1-207ENST00000488320 DDX46Q7L014 1031 aaKnown RBP12.33□□□□□ -0.44
COL17A1-207ENST00000488320 ZNF34Q8IZ26 560 aa12.33□□□□□ -0.44
COL17A1-207ENST00000488320 DPF2Q92785 391 aa12.33□□□□□ -0.44
COL17A1-207ENST00000488320 UTP14AQ9BVJ6 771 aaKnown RBP12.33□□□□□ -0.44
COL17A1-207ENST00000488320 RSPH6AQ9H0K4 717 aa12.33□□□□□ -0.44
COL17A1-207ENST00000488320 NUDCQ9Y266 331 aa12.33□□□□□ -0.44
COL17A1-207ENST00000488320 IBTKQ9P2D0 1353 aaPredicted RBP12.32□□□□□ -0.44
COL17A1-207ENST00000488320 YDJCA8MPS7 323 aa12.32□□□□□ -0.44
COL17A1-207ENST00000488320 GIGYF2Q6Y7W6 1299 aaKnown RBP12.32□□□□□ -0.44
COL17A1-207ENST00000488320 SULF1Q8IWU6 871 aa12.32□□□□□ -0.44
COL17A1-207ENST00000488320 CFAP53Q96M91 514 aa12.32□□□□□ -0.44
COL17A1-207ENST00000488320 PSMD14O00487 310 aa12.31□□□□□ -0.44
COL17A1-207ENST00000488320 RIMBP2O15034 1052 aa12.31□□□□□ -0.44
COL17A1-207ENST00000488320 HTATSF1O43719 755 aaKnown RBP12.31□□□□□ -0.44
COL17A1-207ENST00000488320 TBC1D8O95759 1140 aa12.31□□□□□ -0.44
COL17A1-207ENST00000488320 WASHC4Q2M389 1173 aa12.31□□□□□ -0.44
COL17A1-207ENST00000488320 HABP4Q5JVS0 413 aaKnown RBP12.31□□□□□ -0.44
COL17A1-207ENST00000488320 SLC10A5Q5PT55 438 aa12.31□□□□□ -0.44
COL17A1-207ENST00000488320 PER1O15534 1290 aaPredicted RBP12.3□□□□□ -0.44
COL17A1-207ENST00000488320 EGFRP00533 1210 aa12.3□□□□□ -0.44
COL17A1-207ENST00000488320 U2AF1L5P0DN76 240 aaPredicted RBP12.3□□□□□ -0.44
COL17A1-207ENST00000488320 U2AF1Q01081 240 aaKnown RBP eCLIP12.3□□□□□ -0.44
COL17A1-207ENST00000488320 ZNF296Q8WUU4 475 aaPredicted RBP12.3□□□□□ -0.44
COL17A1-207ENST00000488320 DBNDD1Q9H9R9 158 aa12.3□□□□□ -0.44
COL17A1-207ENST00000488320 COL3A1P02461 1466 aaPredicted RBP12.29□□□□□ -0.44
COL17A1-207ENST00000488320 HCLS1P14317 486 aaPredicted RBP12.29□□□□□ -0.44
COL17A1-207ENST00000488320 RPS12P25398 132 aaKnown RBP12.29□□□□□ -0.44
COL17A1-207ENST00000488320 GRAPQ13588 217 aa12.29□□□□□ -0.44
COL17A1-207ENST00000488320 RASAL3Q86YV0 1011 aa12.29□□□□□ -0.44
COL17A1-207ENST00000488320 GRAPLQ8TC17 118 aaPredicted RBP12.29□□□□□ -0.44
COL17A1-207ENST00000488320 PNISRQ8TF01 805 aaKnown RBP12.29□□□□□ -0.44
COL17A1-207ENST00000488320 CDCA5Q96FF9 252 aa12.29□□□□□ -0.44
COL17A1-207ENST00000488320 LAMB4A4D0S4 1761 aa12.28□□□□□ -0.44
COL17A1-207ENST00000488320 C6orf229H3BNL8 230 aa12.28□□□□□ -0.44
COL17A1-207ENST00000488320 KIF4BQ2VIQ3 1234 aa12.28□□□□□ -0.44
COL17A1-207ENST00000488320 FBXO46Q6PJ61 603 aaPredicted RBP12.28□□□□□ -0.44
COL17A1-207ENST00000488320 NSFL1CQ9UNZ2 370 aaKnown RBP12.28□□□□□ -0.44
COL17A1-207ENST00000488320 G3V3G9 751 aa12.27□□□□□ -0.45
COL17A1-207ENST00000488320 NEFMP07197 916 aa12.27□□□□□ -0.45
COL17A1-207ENST00000488320 EIF4A1P60842 406 aaKnown RBP12.27□□□□□ -0.45
COL17A1-207ENST00000488320 DOK7Q18PE1 504 aa12.27□□□□□ -0.45
COL17A1-207ENST00000488320 DCAF8Q5TAQ9 597 aa12.27□□□□□ -0.45
COL17A1-207ENST00000488320 TMC4Q7Z404 712 aa12.27□□□□□ -0.45
COL17A1-207ENST00000488320 THUMPD2Q9BTF0 503 aaKnown RBP12.27□□□□□ -0.45
COL17A1-207ENST00000488320 GGA3Q9NZ52 723 aa12.27□□□□□ -0.45
COL17A1-207ENST00000488320 GPR25O00155 361 aa12.26□□□□□ -0.45
COL17A1-207ENST00000488320 ECE2O60344 883 aa12.26□□□□□ -0.45
COL17A1-207ENST00000488320 EYA3Q99504 573 aa12.26□□□□□ -0.45
COL17A1-207ENST00000488320 PCGF6Q9BYE7 350 aa12.26□□□□□ -0.45
COL17A1-207ENST00000488320 KCNQ5Q9NR82 932 aa12.26□□□□□ -0.45
COL17A1-207ENST00000488320 TRMT112Q9UI30 125 aaKnown RBP12.26□□□□□ -0.45
COL17A1-207ENST00000488320 TAF1P21675 1872 aa12.25□□□□□ -0.45
COL17A1-207ENST00000488320 EIF2S2P20042 333 aaKnown RBP12.25□□□□□ -0.45
COL17A1-207ENST00000488320 FKBP1BP68106 108 aa12.25□□□□□ -0.45
COL17A1-207ENST00000488320 SCARF1Q14162 830 aa12.25□□□□□ -0.45
COL17A1-207ENST00000488320 TTLL12Q14166 644 aaPredicted RBP12.25□□□□□ -0.45
COL17A1-207ENST00000488320 HSP90AB3PQ58FF7 597 aa12.25□□□□□ -0.45
COL17A1-207ENST00000488320 ANGEL2Q5VTE6 544 aaKnown RBP12.25□□□□□ -0.45
COL17A1-207ENST00000488320 ANKRD36CQ5JPF3 1778 aa12.25□□□□□ -0.45
COL17A1-207ENST00000488320 UBE2Q2LH0YL09 131 aa12.24□□□□□ -0.45
COL17A1-207ENST00000488320 FKTNO75072 461 aa12.24□□□□□ -0.45
COL17A1-207ENST00000488320 ASTN2O75129 1339 aaPredicted RBP12.24□□□□□ -0.45
COL17A1-207ENST00000488320 LAMB2P55268 1798 aa12.24□□□□□ -0.45
COL17A1-207ENST00000488320 ZC3H12CQ9C0D7 883 aaKnown RBP12.24□□□□□ -0.45
COL17A1-207ENST00000488320 ERBB4Q15303 1308 aa12.23□□□□□ -0.45
COL17A1-207ENST00000488320 SH3TC1Q8TE82 1336 aa12.23□□□□□ -0.45
COL17A1-207ENST00000488320 TM4SF4P48230 202 aa12.23□□□□□ -0.45
COL17A1-207ENST00000488320 AIMP1Q12904 312 aaKnown RBP12.23□□□□□ -0.45
COL17A1-207ENST00000488320 MKRN3Q13064 507 aaKnown RBP12.23□□□□□ -0.45
COL17A1-207ENST00000488320 MOB2Q70IA6 237 aa12.23□□□□□ -0.45
COL17A1-207ENST00000488320 NLRP10Q86W26 655 aa12.23□□□□□ -0.45
COL17A1-207ENST00000488320 POLLQ9UGP5 575 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms