RNA–Protein interactions for RNA: ENST00000487996.5

HLA-DMB-261, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,746 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-261ENST00000487996 CNBD1Q8NA66 436 aa13.13□□□□□ -0.31
HLA-DMB-261ENST00000487996 ZBTB47Q9UFB7 747 aaPredicted RBP13.13□□□□□ -0.31
HLA-DMB-261ENST00000487996 PNMA6EA0A0J9YXQ4 647 aa13.12□□□□□ -0.31
HLA-DMB-261ENST00000487996 TM4SF1P30408 202 aa13.12□□□□□ -0.31
HLA-DMB-261ENST00000487996 CTSWP56202 376 aa13.12□□□□□ -0.31
HLA-DMB-261ENST00000487996 ST5P78524 1137 aa13.12□□□□□ -0.31
HLA-DMB-261ENST00000487996 FOXO4P98177 505 aa13.12□□□□□ -0.31
HLA-DMB-261ENST00000487996 LMBR1LQ6UX01 489 aa13.12□□□□□ -0.31
HLA-DMB-261ENST00000487996 JARID2Q92833 1246 aaPredicted RBP13.12□□□□□ -0.31
HLA-DMB-261ENST00000487996 DCTPP1Q9H773 170 aa13.12□□□□□ -0.31
HLA-DMB-261ENST00000487996 SLC10A5Q5PT55 438 aa13.11□□□□□ -0.31
HLA-DMB-261ENST00000487996 SMC5Q8IY18 1101 aa13.11□□□□□ -0.31
HLA-DMB-261ENST00000487996 CHMP3Q9Y3E7 222 aa13.11□□□□□ -0.31
HLA-DMB-261ENST00000487996 RIC1Q4ADV7 1423 aa13.11□□□□□ -0.31
HLA-DMB-261ENST00000487996 SERPINB2P05120 415 aa13.1□□□□□ -0.31
HLA-DMB-261ENST00000487996 CSF1RP07333 972 aa13.1□□□□□ -0.31
HLA-DMB-261ENST00000487996 CCDC57Q2TAC2 916 aa13.1□□□□□ -0.31
HLA-DMB-261ENST00000487996 CCDC152Q4G0S7 254 aa13.1□□□□□ -0.31
HLA-DMB-261ENST00000487996 EPHA10Q5JZY3 1008 aa13.1□□□□□ -0.31
HLA-DMB-261ENST00000487996 NUTM1Q86Y26 1132 aa13.1□□□□□ -0.31
HLA-DMB-261ENST00000487996 PARP3Q9Y6F1 533 aa13.1□□□□□ -0.31
HLA-DMB-261ENST00000487996 POLRMTO00411 1230 aaKnown RBP13.1□□□□□ -0.31
HLA-DMB-261ENST00000487996 IFIT5Q13325 482 aaKnown RBP13.1□□□□□ -0.31
HLA-DMB-261ENST00000487996 ERFEQ4G0M1 354 aa13.1□□□□□ -0.31
HLA-DMB-261ENST00000487996 ERC1Q8IUD2 1116 aa13.1□□□□□ -0.31
HLA-DMB-261ENST00000487996 NLRP3Q96P20 1036 aa13.1□□□□□ -0.31
HLA-DMB-261ENST00000487996 DDX60Q8IY21 1712 aaKnown RBP13.1□□□□□ -0.31
HLA-DMB-261ENST00000487996 RTL9Q8NET4 1388 aa13.09□□□□□ -0.31
HLA-DMB-261ENST00000487996 RAB11FIP3O75154 756 aa13.09□□□□□ -0.31
HLA-DMB-261ENST00000487996 SURF6O75683 361 aaKnown RBP13.09□□□□□ -0.31
HLA-DMB-261ENST00000487996 MMP10P09238 476 aa13.09□□□□□ -0.31
HLA-DMB-261ENST00000487996 HCLS1P14317 486 aaPredicted RBP13.09□□□□□ -0.31
HLA-DMB-261ENST00000487996 SYNE4Q8N205 404 aa13.09□□□□□ -0.31
HLA-DMB-261ENST00000487996 TTLL11Q8NHH1 800 aa13.09□□□□□ -0.31
HLA-DMB-261ENST00000487996 COPRSQ9NQ92 184 aa13.09□□□□□ -0.31
HLA-DMB-261ENST00000487996 FBXO3Q9UK99 471 aa13.09□□□□□ -0.31
HLA-DMB-261ENST00000487996 ANKRD18BA2A2Z9 1011 aa13.08□□□□□ -0.32
HLA-DMB-261ENST00000487996 OS9Q13438 667 aaPredicted RBP13.08□□□□□ -0.32
HLA-DMB-261ENST00000487996 TAF7LQ5H9L4 462 aa13.08□□□□□ -0.32
HLA-DMB-261ENST00000487996 NOP58Q9Y2X3 529 aaKnown RBP13.08□□□□□ -0.32
HLA-DMB-261ENST00000487996 ABCC12Q96J65 1359 aa13.08□□□□□ -0.32
HLA-DMB-261ENST00000487996 DDR1Q08345 913 aa13.08□□□□□ -0.32
HLA-DMB-261ENST00000487996 G3BP1Q13283 466 aaKnown RBP eCLIP13.08□□□□□ -0.32
HLA-DMB-261ENST00000487996 SF3B3Q15393 1217 aaKnown RBP13.08□□□□□ -0.32
HLA-DMB-261ENST00000487996 PRR5LQ6MZQ0 368 aa13.08□□□□□ -0.32
HLA-DMB-261ENST00000487996 NRXN2Q9P2S2 1712 aa13.07□□□□□ -0.32
HLA-DMB-261ENST00000487996 ITGA6P23229 1130 aa13.07□□□□□ -0.32
HLA-DMB-261ENST00000487996 FAM161AQ3B820 660 aa13.07□□□□□ -0.32
HLA-DMB-261ENST00000487996 KIF1BPQ96EK5 621 aa13.07□□□□□ -0.32
HLA-DMB-261ENST00000487996 CDC5LQ99459 802 aaKnown RBP13.07□□□□□ -0.32
HLA-DMB-261ENST00000487996 RFX5P48382 616 aaPredicted RBP13.06□□□□□ -0.32
HLA-DMB-261ENST00000487996 NUCB1Q02818 461 aa13.06□□□□□ -0.32
HLA-DMB-261ENST00000487996 PTPN12Q05209 780 aaKnown RBP13.06□□□□□ -0.32
HLA-DMB-261ENST00000487996 MSL1Q68DK7 614 aa13.06□□□□□ -0.32
HLA-DMB-261ENST00000487996 LRRCC1Q9C099 1032 aa13.06□□□□□ -0.32
HLA-DMB-261ENST00000487996 GREM2Q9H772 168 aa13.06□□□□□ -0.32
HLA-DMB-261ENST00000487996 EXOC6BQ9Y2D4 811 aa13.06□□□□□ -0.32
HLA-DMB-261ENST00000487996 CIAO1O76071 339 aa13.05□□□□□ -0.32
HLA-DMB-261ENST00000487996 ANKRD45Q5TZF3 282 aa13.05□□□□□ -0.32
HLA-DMB-261ENST00000487996 BRIP1Q9BX63 1249 aa13.05□□□□□ -0.32
HLA-DMB-261ENST00000487996 MTFR1LQ9H019 292 aa13.05□□□□□ -0.32
HLA-DMB-261ENST00000487996 CHD1LQ86WJ1 897 aa13.05□□□□□ -0.32
HLA-DMB-261ENST00000487996 PDZRN3Q9UPQ7 1066 aa13.05□□□□□ -0.32
HLA-DMB-261ENST00000487996 CASZ1Q86V15 1759 aa13.04□□□□□ -0.32
HLA-DMB-261ENST00000487996 POLD1P28340 1107 aa13.04□□□□□ -0.32
HLA-DMB-261ENST00000487996 PDE6BP35913 854 aa13.04□□□□□ -0.32
HLA-DMB-261ENST00000487996 IGHMBP2P38935 993 aaKnown RBP13.04□□□□□ -0.32
HLA-DMB-261ENST00000487996 IL15P40933 162 aaPredicted RBP13.04□□□□□ -0.32
HLA-DMB-261ENST00000487996 DDX46Q7L014 1031 aaKnown RBP13.04□□□□□ -0.32
HLA-DMB-261ENST00000487996 CCDC85AQ96PX6 553 aaPredicted RBP13.04□□□□□ -0.32
HLA-DMB-261ENST00000487996 PA2G4Q9UQ80 394 aaKnown RBP13.04□□□□□ -0.32
HLA-DMB-261ENST00000487996 EYA2O00167 538 aa13.03□□□□□ -0.32
HLA-DMB-261ENST00000487996 CRY2Q49AN0 593 aa13.03□□□□□ -0.32
HLA-DMB-261ENST00000487996 LDHAL6AQ6ZMR3 332 aa13.03□□□□□ -0.32
HLA-DMB-261ENST00000487996 RHPN1Q8TCX5 695 aa13.03□□□□□ -0.32
HLA-DMB-261ENST00000487996 RPGRQ92834 1020 aaKnown RBP13.03□□□□□ -0.32
HLA-DMB-261ENST00000487996 MPHOSPH8Q99549 860 aa13.03□□□□□ -0.32
HLA-DMB-261ENST00000487996 SIL1Q9H173 461 aa13.03□□□□□ -0.32
HLA-DMB-261ENST00000487996 APBB1O00213 710 aa13.02□□□□□ -0.32
HLA-DMB-261ENST00000487996 ANKRD18AQ8IVF6 992 aa13.02□□□□□ -0.32
HLA-DMB-261ENST00000487996 CLASRPQ8N2M8 674 aaKnown RBP13.02□□□□□ -0.32
HLA-DMB-261ENST00000487996 CNNM1Q9NRU3 951 aa13.02□□□□□ -0.32
HLA-DMB-261ENST00000487996 KLRG2A4D1S0 409 aaPredicted RBP13.02□□□□□ -0.33
HLA-DMB-261ENST00000487996 ATXN8OSP0DMR3 200 aa13.02□□□□□ -0.33
HLA-DMB-261ENST00000487996 KLHDC4Q8TBB5 520 aa13.02□□□□□ -0.33
HLA-DMB-261ENST00000487996 RBM17Q96I25 401 aaKnown RBP13.02□□□□□ -0.33
HLA-DMB-261ENST00000487996 LNPKQ9C0E8 428 aa13.02□□□□□ -0.33
HLA-DMB-261ENST00000487996 PDGFDQ9GZP0 370 aaPredicted RBP13.02□□□□□ -0.33
HLA-DMB-261ENST00000487996 TNRC6CQ9HCJ0 1690 aaKnown RBP13.01□□□□□ -0.33
HLA-DMB-261ENST00000487996 CCDC24Q8N4L8 307 aa13.01□□□□□ -0.33
HLA-DMB-261ENST00000487996 CEP126Q9P2H0 1117 aa13.01□□□□□ -0.33
HLA-DMB-261ENST00000487996 MROH5Q6ZUA9 1318 aa13.01□□□□□ -0.33
HLA-DMB-261ENST00000487996 C3orf67Q6ZVT6 689 aa13□□□□□ -0.33
HLA-DMB-261ENST00000487996 ZNF594Q96JF6 807 aaPredicted RBP13□□□□□ -0.33
HLA-DMB-261ENST00000487996 GPR108Q9NPR9 543 aa13□□□□□ -0.33
HLA-DMB-261ENST00000487996 SEC31BQ9NQW1 1179 aa13□□□□□ -0.33
HLA-DMB-261ENST00000487996 AKAP2Q9Y2D5 859 aa13□□□□□ -0.33
HLA-DMB-261ENST00000487996 ZBTB7AO95365 584 aa12.99□□□□□ -0.33
HLA-DMB-261ENST00000487996 HOXA10P31260 410 aaPredicted RBP12.99□□□□□ -0.33
HLA-DMB-261ENST00000487996 RPS8P62241 208 aaKnown RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms