RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 DDX60Q8IY21 1712 aaKnown RBP26.15■■□□□ 1.78
HDAC4-209ENST00000487617 IGKV5-2P06315 115 aa26.15■■□□□ 1.78
HDAC4-209ENST00000487617 FKBP5Q13451 457 aaPredicted RBP26.15■■□□□ 1.78
HDAC4-209ENST00000487617 JDP2Q8WYK2 163 aa26.15■■□□□ 1.78
HDAC4-209ENST00000487617 POTECB2RU33 542 aa26.14■■□□□ 1.78
HDAC4-209ENST00000487617 TMC4Q7Z404 712 aa26.14■■□□□ 1.78
HDAC4-209ENST00000487617 LARGE2Q8N3Y3 721 aa26.14■■□□□ 1.78
HDAC4-209ENST00000487617 ZNF541Q9H0D2 1346 aa26.13■■□□□ 1.77
HDAC4-209ENST00000487617 FZD9O00144 591 aa26.12■■□□□ 1.77
HDAC4-209ENST00000487617 CWF19L2Q2TBE0 894 aaKnown RBP26.12■■□□□ 1.77
HDAC4-209ENST00000487617 DPP8Q6V1X1 898 aaPredicted RBP26.12■■□□□ 1.77
HDAC4-209ENST00000487617 MPNDQ8N594 471 aa26.12■■□□□ 1.77
HDAC4-209ENST00000487617 CELF1Q92879 486 aaKnown RBP26.12■■□□□ 1.77
HDAC4-209ENST00000487617 NEURL1BA8MQ27 555 aa26.11■■□□□ 1.77
HDAC4-209ENST00000487617 PDE8AO60658 829 aa26.11■■□□□ 1.77
HDAC4-209ENST00000487617 FSTL1Q12841 308 aa26.11■■□□□ 1.77
HDAC4-209ENST00000487617 SUPT20HQ8NEM7 779 aa26.11■■□□□ 1.77
HDAC4-209ENST00000487617 DNAAF4Q8WXU2 420 aa26.11■■□□□ 1.77
HDAC4-209ENST00000487617 WDR90Q96KV7 1748 aa26.11■■□□□ 1.77
HDAC4-209ENST00000487617 PPIP5K2O43314 1243 aa26.1■■□□□ 1.77
HDAC4-209ENST00000487617 RTFDC1Q9BY42 306 aaPredicted RBP26.1■■□□□ 1.77
HDAC4-209ENST00000487617 CDHR2Q9BYE9 1310 aa26.1■■□□□ 1.77
HDAC4-209ENST00000487617 EIF6P56537 245 aaKnown RBP26.09■■□□□ 1.77
HDAC4-209ENST00000487617 AOC3Q16853 763 aa26.09■■□□□ 1.77
HDAC4-209ENST00000487617 CCDC152Q4G0S7 254 aa26.09■■□□□ 1.77
HDAC4-209ENST00000487617 SMC1BQ8NDV3 1235 aa26.09■■□□□ 1.77
HDAC4-209ENST00000487617 E9PSI1 815 aa26.08■■□□□ 1.77
HDAC4-209ENST00000487617 NIM1KQ8IY84 436 aa26.08■■□□□ 1.77
HDAC4-209ENST00000487617 L3MBTL3Q96JM7 780 aaPredicted RBP26.08■■□□□ 1.77
HDAC4-209ENST00000487617 VPS33BQ9H267 617 aa26.08■■□□□ 1.77
HDAC4-209ENST00000487617 COL4A5P29400 1685 aa26.07■■□□□ 1.76
HDAC4-209ENST00000487617 IQCA1LA6NCM1 817 aa26.07■■□□□ 1.76
HDAC4-209ENST00000487617 RPS8P62241 208 aaKnown RBP26.07■■□□□ 1.76
HDAC4-209ENST00000487617 CCDC85AQ96PX6 553 aaPredicted RBP26.07■■□□□ 1.76
HDAC4-209ENST00000487617 SEC31BQ9NQW1 1179 aa26.07■■□□□ 1.76
HDAC4-209ENST00000487617 TAF1P21675 1872 aa26.05■■□□□ 1.76
HDAC4-209ENST00000487617 CTSWP56202 376 aa26.05■■□□□ 1.76
HDAC4-209ENST00000487617 GCKRQ14397 625 aa26.05■■□□□ 1.76
HDAC4-209ENST00000487617 UBE3BQ7Z3V4 1068 aa26.05■■□□□ 1.76
HDAC4-209ENST00000487617 GPC2Q8N158 579 aa26.05■■□□□ 1.76
HDAC4-209ENST00000487617 LINS1Q8NG48 757 aa26.05■■□□□ 1.76
HDAC4-209ENST00000487617 F6X3S4 739 aa26.04■■□□□ 1.76
HDAC4-209ENST00000487617 H7C1W4 665 aa26.04■■□□□ 1.76
HDAC4-209ENST00000487617 APLP1P51693 650 aa26.04■■□□□ 1.76
HDAC4-209ENST00000487617 SLFN5Q08AF3 891 aa26.04■■□□□ 1.76
HDAC4-209ENST00000487617 NSFL1CQ9UNZ2 370 aaKnown RBP26.04■■□□□ 1.76
HDAC4-209ENST00000487617 GJA3Q9Y6H8 435 aa26.04■■□□□ 1.76
HDAC4-209ENST00000487617 KIAA2012Q0VF49 1180 aa26.03■■□□□ 1.76
HDAC4-209ENST00000487617 COL4A1P02462 1669 aa26.03■■□□□ 1.76
HDAC4-209ENST00000487617 GPSM2P81274 684 aa26.02■■□□□ 1.76
HDAC4-209ENST00000487617 DIEXFQ68CQ4 756 aaKnown RBP26.02■■□□□ 1.76
HDAC4-209ENST00000487617 TAF1DQ9H5J8 278 aaPredicted RBP26.02■■□□□ 1.76
HDAC4-209ENST00000487617 HACL1Q9UJ83 578 aa26.02■■□□□ 1.76
HDAC4-209ENST00000487617 CACNA1FO60840 1977 aa26.02■■□□□ 1.76
HDAC4-209ENST00000487617 TTLL11Q8NHH1 800 aa26.01■■□□□ 1.75
HDAC4-209ENST00000487617 ZNRF3Q9ULT6 936 aa26.01■■□□□ 1.75
HDAC4-209ENST00000487617 C6orf229H3BNL8 230 aa26■■□□□ 1.75
HDAC4-209ENST00000487617 ANKRD18AQ8IVF6 992 aa26■■□□□ 1.75
HDAC4-209ENST00000487617 CDCA7LQ96GN5 454 aa26■■□□□ 1.75
HDAC4-209ENST00000487617 LRRC37AA6NMS7 1700 aa26■■□□□ 1.75
HDAC4-209ENST00000487617 WASHC4Q2M389 1173 aa25.99■■□□□ 1.75
HDAC4-209ENST00000487617 BEND3Q5T5X7 828 aa25.99■■□□□ 1.75
HDAC4-209ENST00000487617 CDC5LQ99459 802 aaKnown RBP25.99■■□□□ 1.75
HDAC4-209ENST00000487617 POTEIP0CG38 1075 aa25.98■■□□□ 1.75
HDAC4-209ENST00000487617 POTEJP0CG39 1038 aa25.98■■□□□ 1.75
HDAC4-209ENST00000487617 EPHX2P34913 555 aa25.98■■□□□ 1.75
HDAC4-209ENST00000487617 CASP7P55210 303 aa25.98■■□□□ 1.75
HDAC4-209ENST00000487617 GREM2Q9H772 168 aa25.98■■□□□ 1.75
HDAC4-209ENST00000487617 POLLQ9UGP5 575 aa25.98■■□□□ 1.75
HDAC4-209ENST00000487617 DUOX1Q9NRD9 1551 aa25.98■■□□□ 1.75
HDAC4-209ENST00000487617 EAPPQ56P03 285 aaPredicted RBP25.97■■□□□ 1.75
HDAC4-209ENST00000487617 CHADLQ6NUI6 762 aa25.97■■□□□ 1.75
HDAC4-209ENST00000487617 MIER1Q8N108 512 aa25.97■■□□□ 1.75
HDAC4-209ENST00000487617 PLA2G12BQ9BX93 195 aa25.97■■□□□ 1.75
HDAC4-209ENST00000487617 ANKIB1Q9P2G1 1089 aa25.97■■□□□ 1.75
HDAC4-209ENST00000487617 RIMBP2O15034 1052 aa25.96■■□□□ 1.75
HDAC4-209ENST00000487617 LMOD1P29536 600 aaPredicted RBP25.96■■□□□ 1.75
HDAC4-209ENST00000487617 CXCL9Q07325 125 aa25.96■■□□□ 1.75
HDAC4-209ENST00000487617 SLC4A10Q6U841 1118 aa25.96■■□□□ 1.75
HDAC4-209ENST00000487617 LDHDQ86WU2 507 aa25.96■■□□□ 1.75
HDAC4-209ENST00000487617 MRPL50Q8N5N7 158 aaKnown RBP25.96■■□□□ 1.75
HDAC4-209ENST00000487617 TBC1D16Q8TBP0 767 aa25.96■■□□□ 1.75
HDAC4-209ENST00000487617 EYA3Q99504 573 aa25.96■■□□□ 1.75
HDAC4-209ENST00000487617 PODXL2Q9NZ53 605 aa25.95■■□□□ 1.74
HDAC4-209ENST00000487617 SCN4AP35499 1836 aa25.95■■□□□ 1.74
HDAC4-209ENST00000487617 RTL9Q8NET4 1388 aa25.95■■□□□ 1.74
HDAC4-209ENST00000487617 CIAPIN1Q6FI81 312 aa25.94■■□□□ 1.74
HDAC4-209ENST00000487617 PNMA8AQ86V59 439 aaPredicted RBP25.94■■□□□ 1.74
HDAC4-209ENST00000487617 GPR101Q96P66 508 aaPredicted RBP25.94■■□□□ 1.74
HDAC4-209ENST00000487617 GGA1Q9UJY5 639 aa25.94■■□□□ 1.74
HDAC4-209ENST00000487617 RAD17O75943 681 aa25.93■■□□□ 1.74
HDAC4-209ENST00000487617 UFL1O94874 794 aa25.93■■□□□ 1.74
HDAC4-209ENST00000487617 SCNN1DP51172 638 aa25.93■■□□□ 1.74
HDAC4-209ENST00000487617 TRMT2AQ8IZ69 625 aaKnown RBP25.93■■□□□ 1.74
HDAC4-209ENST00000487617 SSH1Q8WYL5 1049 aa25.93■■□□□ 1.74
HDAC4-209ENST00000487617 CLEC11AQ9Y240 323 aa25.93■■□□□ 1.74
HDAC4-209ENST00000487617 HTRA3P83110 453 aa25.92■■□□□ 1.74
HDAC4-209ENST00000487617 TNIP1Q15025 636 aa25.92■■□□□ 1.74
HDAC4-209ENST00000487617 DBNDD1Q9H9R9 158 aa25.92■■□□□ 1.74
HDAC4-209ENST00000487617 BSDC1Q9NW68 430 aaPredicted RBP25.92■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 114.8 ms