RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 SIK1P57059 783 aa9.28□□□□□ -0.92
HDAC3-209ENST00000486618 Q3C1V9 767 aa9.28□□□□□ -0.92
HDAC3-209ENST00000486618 MSS51Q4VC12 460 aa9.28□□□□□ -0.92
HDAC3-209ENST00000486618 C16orf71Q8IYS4 520 aaPredicted RBP9.28□□□□□ -0.92
HDAC3-209ENST00000486618 PIGBQ92521 554 aa9.28□□□□□ -0.92
HDAC3-209ENST00000486618 SPG7Q9UQ90 795 aa9.28□□□□□ -0.92
HDAC3-209ENST00000486618 BCS1LQ9Y276 419 aa9.28□□□□□ -0.92
HDAC3-209ENST00000486618 FCF1Q9Y324 198 aaKnown RBP9.28□□□□□ -0.92
HDAC3-209ENST00000486618 KIF24Q5T7B8 1368 aa9.27□□□□□ -0.93
HDAC3-209ENST00000486618 NRG2O14511 850 aaPredicted RBP9.27□□□□□ -0.93
HDAC3-209ENST00000486618 FYB1O15117 783 aa9.27□□□□□ -0.93
HDAC3-209ENST00000486618 MMP10P09238 476 aa9.27□□□□□ -0.93
HDAC3-209ENST00000486618 SSTR3P32745 418 aaPredicted RBP9.27□□□□□ -0.93
HDAC3-209ENST00000486618 GUCA2AQ02747 115 aa9.27□□□□□ -0.93
HDAC3-209ENST00000486618 HSP90AB2PQ58FF8 381 aa9.27□□□□□ -0.93
HDAC3-209ENST00000486618 ARHGAP27Q6ZUM4 889 aa9.27□□□□□ -0.93
HDAC3-209ENST00000486618 AMIGO3Q86WK7 504 aa9.27□□□□□ -0.93
HDAC3-209ENST00000486618 NLGN1Q8N2Q7 840 aa9.27□□□□□ -0.93
HDAC3-209ENST00000486618 GGNBP2Q9H3C7 697 aa9.27□□□□□ -0.93
HDAC3-209ENST00000486618 TMOD3Q9NYL9 352 aa9.27□□□□□ -0.93
HDAC3-209ENST00000486618 PDZRN3Q9UPQ7 1066 aa9.27□□□□□ -0.93
HDAC3-209ENST00000486618 CICQ96RK0 1608 aaPredicted RBP9.27□□□□□ -0.93
HDAC3-209ENST00000486618 FLT4P35916 1363 aa9.26□□□□□ -0.93
HDAC3-209ENST00000486618 TOGARAM1Q9Y4F4 1720 aa9.26□□□□□ -0.93
HDAC3-209ENST00000486618 GIGYF2Q6Y7W6 1299 aaKnown RBP9.26□□□□□ -0.93
HDAC3-209ENST00000486618 TRIM67Q6ZTA4 783 aa9.26□□□□□ -0.93
HDAC3-209ENST00000486618 SMIM5Q71RC9 77 aa9.26□□□□□ -0.93
HDAC3-209ENST00000486618 ZNF598Q86UK7 904 aaKnown RBP9.26□□□□□ -0.93
HDAC3-209ENST00000486618 LINC00116Q8NCU8 138 aa9.26□□□□□ -0.93
HDAC3-209ENST00000486618 PKNOX2Q96KN3 472 aa9.26□□□□□ -0.93
HDAC3-209ENST00000486618 ST20-MTHFSA0A0A6YYL1 179 aa9.25□□□□□ -0.93
HDAC3-209ENST00000486618 A0A0G2JLW4 131 aa9.25□□□□□ -0.93
HDAC3-209ENST00000486618 TRIM66O15016 1216 aa9.25□□□□□ -0.93
HDAC3-209ENST00000486618 TMF1P82094 1093 aa9.25□□□□□ -0.93
HDAC3-209ENST00000486618 FSTL1Q12841 308 aa9.25□□□□□ -0.93
HDAC3-209ENST00000486618 TRAPPC3LQ5T215 181 aa9.25□□□□□ -0.93
HDAC3-209ENST00000486618 NUTM1Q86Y26 1132 aa9.25□□□□□ -0.93
HDAC3-209ENST00000486618 KLRG1Q96E93 195 aa9.25□□□□□ -0.93
HDAC3-209ENST00000486618 TESK2Q96S53 571 aa9.25□□□□□ -0.93
HDAC3-209ENST00000486618 NMRK2Q9NPI5 230 aa9.25□□□□□ -0.93
HDAC3-209ENST00000486618 CCDC87Q9NVE4 849 aa9.25□□□□□ -0.93
HDAC3-209ENST00000486618 RTCBQ9Y3I0 505 aaKnown RBP9.25□□□□□ -0.93
HDAC3-209ENST00000486618 MAP2P11137 1827 aaKnown RBP9.25□□□□□ -0.93
HDAC3-209ENST00000486618 KIF13BQ9NQT8 1826 aa9.25□□□□□ -0.93
HDAC3-209ENST00000486618 PXDNLA1KZ92 1463 aa9.24□□□□□ -0.93
HDAC3-209ENST00000486618 ZNF697Q5TEC3 545 aa9.24□□□□□ -0.93
HDAC3-209ENST00000486618 PARP9Q8IXQ6 854 aa9.24□□□□□ -0.93
HDAC3-209ENST00000486618 IFNL2Q8IZJ0 200 aa9.24□□□□□ -0.93
HDAC3-209ENST00000486618 USB1Q9BQ65 265 aaKnown RBP9.24□□□□□ -0.93
HDAC3-209ENST00000486618 WDR90Q96KV7 1748 aa9.24□□□□□ -0.93
HDAC3-209ENST00000486618 KDM2BQ8NHM5 1336 aa9.24□□□□□ -0.93
HDAC3-209ENST00000486618 N4BP2Q86UW6 1770 aaPredicted RBP9.24□□□□□ -0.93
HDAC3-209ENST00000486618 TONSLQ96HA7 1378 aa9.24□□□□□ -0.93
HDAC3-209ENST00000486618 PLEKHG2Q9H7P9 1386 aa9.24□□□□□ -0.93
HDAC3-209ENST00000486618 PKD1L3Q7Z443 1732 aa9.23□□□□□ -0.93
HDAC3-209ENST00000486618 LCE2BO14633 110 aa9.23□□□□□ -0.93
HDAC3-209ENST00000486618 DPEP1P16444 411 aa9.23□□□□□ -0.93
HDAC3-209ENST00000486618 BRPF1P55201 1214 aaPredicted RBP9.23□□□□□ -0.93
HDAC3-209ENST00000486618 ITPK1Q13572 414 aa9.23□□□□□ -0.93
HDAC3-209ENST00000486618 CDCA8Q53HL2 280 aa9.23□□□□□ -0.93
HDAC3-209ENST00000486618 C9orf131Q5VYM1 1079 aa9.23□□□□□ -0.93
HDAC3-209ENST00000486618 JMYQ8N9B5 988 aa9.23□□□□□ -0.93
HDAC3-209ENST00000486618 ASAP1Q9ULH1 1129 aa9.23□□□□□ -0.93
HDAC3-209ENST00000486618 PARP3Q9Y6F1 533 aa9.23□□□□□ -0.93
HDAC3-209ENST00000486618 RFC4P35249 363 aa9.22□□□□□ -0.93
HDAC3-209ENST00000486618 MMP16P51512 607 aa9.22□□□□□ -0.93
HDAC3-209ENST00000486618 COL13A1Q5TAT6 717 aaPredicted RBP9.22□□□□□ -0.93
HDAC3-209ENST00000486618 RC3H1Q5TC82 1133 aaKnown RBP9.22□□□□□ -0.93
HDAC3-209ENST00000486618 TNS4Q8IZW8 715 aa9.22□□□□□ -0.93
HDAC3-209ENST00000486618 SPIRE2Q8WWL2 714 aa9.22□□□□□ -0.93
HDAC3-209ENST00000486618 PIM2Q9P1W9 311 aa9.22□□□□□ -0.93
HDAC3-209ENST00000486618 C10orf71Q711Q0 1435 aa9.22□□□□□ -0.93
HDAC3-209ENST00000486618 PPM1GO15355 546 aaPredicted RBP9.21□□□□□ -0.94
HDAC3-209ENST00000486618 RPS6KA4O75676 772 aa9.21□□□□□ -0.94
HDAC3-209ENST00000486618 PHKG2P15735 406 aa9.21□□□□□ -0.94
HDAC3-209ENST00000486618 ATG3Q9NT62 314 aa9.21□□□□□ -0.94
HDAC3-209ENST00000486618 KIF20BQ96Q89 1820 aa9.21□□□□□ -0.94
HDAC3-209ENST00000486618 ARFGEF1Q9Y6D6 1849 aa9.21□□□□□ -0.94
HDAC3-209ENST00000486618 KIAA1551Q9HCM1 1747 aa9.2□□□□□ -0.94
HDAC3-209ENST00000486618 BRCA1P38398 1863 aaKnown RBP9.2□□□□□ -0.94
HDAC3-209ENST00000486618 ERVV-2B6SEH9 535 aa9.2□□□□□ -0.94
HDAC3-209ENST00000486618 DXOO77932 396 aaKnown RBP9.2□□□□□ -0.94
HDAC3-209ENST00000486618 GYS1P13807 737 aa9.2□□□□□ -0.94
HDAC3-209ENST00000486618 RPIAP49247 311 aa9.2□□□□□ -0.94
HDAC3-209ENST00000486618 PRR20EP86478 221 aa9.2□□□□□ -0.94
HDAC3-209ENST00000486618 PRR20CP86479 221 aa9.2□□□□□ -0.94
HDAC3-209ENST00000486618 PRR20DP86480 221 aa9.2□□□□□ -0.94
HDAC3-209ENST00000486618 PRR20BP86481 221 aa9.2□□□□□ -0.94
HDAC3-209ENST00000486618 PRR20AP86496 221 aa9.2□□□□□ -0.94
HDAC3-209ENST00000486618 DALRD3Q5D0E6 543 aaKnown RBP9.2□□□□□ -0.94
HDAC3-209ENST00000486618 SMC1BQ8NDV3 1235 aa9.2□□□□□ -0.94
HDAC3-209ENST00000486618 SYMPKQ92797 1274 aaKnown RBP9.2□□□□□ -0.94
HDAC3-209ENST00000486618 BEGAINQ9BUH8 593 aa9.2□□□□□ -0.94
HDAC3-209ENST00000486618 RRAGCQ9HB90 399 aa9.2□□□□□ -0.94
HDAC3-209ENST00000486618 EMILIN1Q9Y6C2 1016 aa9.2□□□□□ -0.94
HDAC3-209ENST00000486618 WASHC2AQ641Q2 1341 aa9.2□□□□□ -0.94
HDAC3-209ENST00000486618 NCAPD2Q15021 1401 aa9.2□□□□□ -0.94
HDAC3-209ENST00000486618 C4AP0C0L4 1744 aa9.19□□□□□ -0.94
HDAC3-209ENST00000486618 RAD21O60216 631 aa9.19□□□□□ -0.94
HDAC3-209ENST00000486618 GDF9O60383 454 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms