RNA–Protein interactions for RNA: ENST00000486404.5

CHMP3-208, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 650 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-208ENST00000486404 RBM46Q8TBY0 533 aaKnown RBP16.49■□□□□ 0.23
CHMP3-208ENST00000486404 BBOX1O75936 387 aa16.48■□□□□ 0.23
CHMP3-208ENST00000486404 HSPA6P17066 643 aa16.48■□□□□ 0.23
CHMP3-208ENST00000486404 FLIIQ13045 1269 aa16.48■□□□□ 0.23
CHMP3-208ENST00000486404 FKBP5Q13451 457 aaPredicted RBP16.48■□□□□ 0.23
CHMP3-208ENST00000486404 TMC4Q7Z404 712 aa16.48■□□□□ 0.23
CHMP3-208ENST00000486404 ZNF541Q9H0D2 1346 aa16.47■□□□□ 0.23
CHMP3-208ENST00000486404 CCER2I3L3R5 266 aa16.47■□□□□ 0.23
CHMP3-208ENST00000486404 PCCAP05165 728 aaPredicted RBP16.47■□□□□ 0.23
CHMP3-208ENST00000486404 DPP8Q6V1X1 898 aaPredicted RBP16.47■□□□□ 0.23
CHMP3-208ENST00000486404 SLC51AQ86UW1 340 aa16.47■□□□□ 0.23
CHMP3-208ENST00000486404 LARGE2Q8N3Y3 721 aa16.47■□□□□ 0.23
CHMP3-208ENST00000486404 SUPT20HQ8NEM7 779 aa16.47■□□□□ 0.23
CHMP3-208ENST00000486404 SPINK5Q9NQ38 1064 aaPredicted RBP16.47■□□□□ 0.23
CHMP3-208ENST00000486404 PPIP5K2O43314 1243 aa16.46■□□□□ 0.23
CHMP3-208ENST00000486404 SF3B3Q15393 1217 aaKnown RBP16.46■□□□□ 0.23
CHMP3-208ENST00000486404 G2E3Q7L622 706 aa16.46■□□□□ 0.23
CHMP3-208ENST00000486404 NIM1KQ8IY84 436 aa16.46■□□□□ 0.23
CHMP3-208ENST00000486404 SMC1BQ8NDV3 1235 aa16.46■□□□□ 0.23
CHMP3-208ENST00000486404 COL4A5P29400 1685 aa16.46■□□□□ 0.23
CHMP3-208ENST00000486404 IQCA1LA6NCM1 817 aa16.45■□□□□ 0.22
CHMP3-208ENST00000486404 VAMP4O75379 141 aa16.45■□□□□ 0.22
CHMP3-208ENST00000486404 DDNO94850 711 aaPredicted RBP16.45■□□□□ 0.22
CHMP3-208ENST00000486404 EIF6P56537 245 aaKnown RBP16.45■□□□□ 0.22
CHMP3-208ENST00000486404 FSTL1Q12841 308 aa16.45■□□□□ 0.22
CHMP3-208ENST00000486404 CCDC152Q4G0S7 254 aa16.45■□□□□ 0.22
CHMP3-208ENST00000486404 SP8Q8IXZ3 490 aa16.45■□□□□ 0.22
CHMP3-208ENST00000486404 MPNDQ8N594 471 aa16.45■□□□□ 0.22
CHMP3-208ENST00000486404 DUOX1Q9NRD9 1551 aa16.45■□□□□ 0.22
CHMP3-208ENST00000486404 COL4A1P02462 1669 aa16.45■□□□□ 0.22
CHMP3-208ENST00000486404 LTBP1Q14766 1721 aa16.45■□□□□ 0.22
CHMP3-208ENST00000486404 ZNF521Q96K83 1311 aa16.45■□□□□ 0.22
CHMP3-208ENST00000486404 CDHR2Q9BYE9 1310 aa16.45■□□□□ 0.22
CHMP3-208ENST00000486404 PDE8AO60658 829 aa16.44■□□□□ 0.22
CHMP3-208ENST00000486404 AOC3Q16853 763 aa16.44■□□□□ 0.22
CHMP3-208ENST00000486404 CWF19L2Q2TBE0 894 aaKnown RBP16.44■□□□□ 0.22
CHMP3-208ENST00000486404 DNAAF4Q8WXU2 420 aa16.44■□□□□ 0.22
CHMP3-208ENST00000486404 NEURL1BA8MQ27 555 aa16.43■□□□□ 0.22
CHMP3-208ENST00000486404 E9PSI1 815 aa16.43■□□□□ 0.22
CHMP3-208ENST00000486404 IGKV5-2P06315 115 aa16.43■□□□□ 0.22
CHMP3-208ENST00000486404 JARID2Q92833 1246 aaPredicted RBP16.43■□□□□ 0.22
CHMP3-208ENST00000486404 CELF1Q92879 486 aaKnown RBP16.43■□□□□ 0.22
CHMP3-208ENST00000486404 FZD9O00144 591 aa16.42■□□□□ 0.22
CHMP3-208ENST00000486404 APLP1P51693 650 aa16.42■□□□□ 0.22
CHMP3-208ENST00000486404 UBE3BQ7Z3V4 1068 aa16.42■□□□□ 0.22
CHMP3-208ENST00000486404 L3MBTL3Q96JM7 780 aaPredicted RBP16.42■□□□□ 0.22
CHMP3-208ENST00000486404 CCDC85AQ96PX6 553 aaPredicted RBP16.42■□□□□ 0.22
CHMP3-208ENST00000486404 GJA3Q9Y6H8 435 aa16.42■□□□□ 0.22
CHMP3-208ENST00000486404 CTSWP56202 376 aa16.41■□□□□ 0.22
CHMP3-208ENST00000486404 GPC2Q8N158 579 aa16.41■□□□□ 0.22
CHMP3-208ENST00000486404 RTFDC1Q9BY42 306 aaPredicted RBP16.41■□□□□ 0.22
CHMP3-208ENST00000486404 VPS33BQ9H267 617 aa16.41■□□□□ 0.22
CHMP3-208ENST00000486404 HACL1Q9UJ83 578 aa16.41■□□□□ 0.22
CHMP3-208ENST00000486404 LMOD1P29536 600 aaPredicted RBP16.4■□□□□ 0.22
CHMP3-208ENST00000486404 LINS1Q8NG48 757 aa16.4■□□□□ 0.22
CHMP3-208ENST00000486404 NSFL1CQ9UNZ2 370 aaKnown RBP16.4■□□□□ 0.22
CHMP3-208ENST00000486404 POTECB2RU33 542 aa16.39■□□□□ 0.21
CHMP3-208ENST00000486404 NPM3O75607 178 aaKnown RBP16.39■□□□□ 0.21
CHMP3-208ENST00000486404 RPS8P62241 208 aaKnown RBP16.39■□□□□ 0.21
CHMP3-208ENST00000486404 GCKRQ14397 625 aa16.39■□□□□ 0.21
CHMP3-208ENST00000486404 EAPPQ56P03 285 aaPredicted RBP16.39■□□□□ 0.21
CHMP3-208ENST00000486404 ANKRD18AQ8IVF6 992 aa16.39■□□□□ 0.21
CHMP3-208ENST00000486404 CDC5LQ99459 802 aaKnown RBP16.39■□□□□ 0.21
CHMP3-208ENST00000486404 SEC31BQ9NQW1 1179 aa16.39■□□□□ 0.21
CHMP3-208ENST00000486404 ADAMTSL1Q8N6G6 1762 aa16.38■□□□□ 0.21
CHMP3-208ENST00000486404 C6orf229H3BNL8 230 aa16.38■□□□□ 0.21
CHMP3-208ENST00000486404 KIAA2012Q0VF49 1180 aa16.38■□□□□ 0.21
CHMP3-208ENST00000486404 DIEXFQ68CQ4 756 aaKnown RBP16.38■□□□□ 0.21
CHMP3-208ENST00000486404 EYA3Q99504 573 aa16.38■□□□□ 0.21
CHMP3-208ENST00000486404 ANKIB1Q9P2G1 1089 aa16.38■□□□□ 0.21
CHMP3-208ENST00000486404 A0A1B0GUL6 1792 aa16.37■□□□□ 0.21
CHMP3-208ENST00000486404 F6X3S4 739 aa16.37■□□□□ 0.21
CHMP3-208ENST00000486404 EPHX2P34913 555 aa16.37■□□□□ 0.21
CHMP3-208ENST00000486404 GPSM2P81274 684 aa16.37■□□□□ 0.21
CHMP3-208ENST00000486404 CHADLQ6NUI6 762 aa16.37■□□□□ 0.21
CHMP3-208ENST00000486404 TAF1DQ9H5J8 278 aaPredicted RBP16.37■□□□□ 0.21
CHMP3-208ENST00000486404 ZNRF3Q9ULT6 936 aa16.37■□□□□ 0.21
CHMP3-208ENST00000486404 RTL9Q8NET4 1388 aa16.37■□□□□ 0.21
CHMP3-208ENST00000486404 PSME4Q14997 1843 aa16.36■□□□□ 0.21
CHMP3-208ENST00000486404 UFL1O94874 794 aa16.36■□□□□ 0.21
CHMP3-208ENST00000486404 WASHC4Q2M389 1173 aa16.36■□□□□ 0.21
CHMP3-208ENST00000486404 SLC4A10Q6U841 1118 aa16.36■□□□□ 0.21
CHMP3-208ENST00000486404 LDHDQ86WU2 507 aa16.36■□□□□ 0.21
CHMP3-208ENST00000486404 CEP350Q5VT06 3117 aa16.35■□□□□ 0.21
CHMP3-208ENST00000486404 H7C1W4 665 aa16.35■□□□□ 0.21
CHMP3-208ENST00000486404 RIMBP2O15034 1052 aa16.35■□□□□ 0.21
CHMP3-208ENST00000486404 SLFN5Q08AF3 891 aa16.35■□□□□ 0.21
CHMP3-208ENST00000486404 PNMA8AQ86V59 439 aaPredicted RBP16.35■□□□□ 0.21
CHMP3-208ENST00000486404 GREM2Q9H772 168 aa16.35■□□□□ 0.21
CHMP3-208ENST00000486404 GGA1Q9UJY5 639 aa16.35■□□□□ 0.21
CHMP3-208ENST00000486404 CLEC11AQ9Y240 323 aa16.35■□□□□ 0.21
CHMP3-208ENST00000486404 G3V3G9 751 aa16.34■□□□□ 0.21
CHMP3-208ENST00000486404 POTEIP0CG38 1075 aa16.34■□□□□ 0.21
CHMP3-208ENST00000486404 POTEJP0CG39 1038 aa16.34■□□□□ 0.21
CHMP3-208ENST00000486404 IGHMBP2P38935 993 aaKnown RBP16.34■□□□□ 0.21
CHMP3-208ENST00000486404 DCAF8Q5TAQ9 597 aa16.34■□□□□ 0.21
CHMP3-208ENST00000486404 CIAPIN1Q6FI81 312 aa16.34■□□□□ 0.21
CHMP3-208ENST00000486404 TTLL11Q8NHH1 800 aa16.34■□□□□ 0.21
CHMP3-208ENST00000486404 XDHP47989 1333 aa16.34■□□□□ 0.21
CHMP3-208ENST00000486404 RAD17O75943 681 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms