RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 DPP8Q6V1X1 898 aaPredicted RBP17.06■□□□□ 0.32
HDAC6-227ENST00000485102 XAGE3Q8WTP9 111 aa17.06■□□□□ 0.32
HDAC6-227ENST00000485102 HHIPL1Q96JK4 782 aa17.06■□□□□ 0.32
HDAC6-227ENST00000485102 GRAPQ13588 217 aa17.05■□□□□ 0.32
HDAC6-227ENST00000485102 TNIP1Q15025 636 aa17.05■□□□□ 0.32
HDAC6-227ENST00000485102 CIAPIN1Q6FI81 312 aa17.05■□□□□ 0.32
HDAC6-227ENST00000485102 DDX46Q7L014 1031 aaKnown RBP17.05■□□□□ 0.32
HDAC6-227ENST00000485102 GRAPLQ8TC17 118 aaPredicted RBP17.05■□□□□ 0.32
HDAC6-227ENST00000485102 GPR101Q96P66 508 aaPredicted RBP17.05■□□□□ 0.32
HDAC6-227ENST00000485102 LAMB2P55268 1798 aa17.05■□□□□ 0.32
HDAC6-227ENST00000485102 TRAF5O00463 557 aa17.04■□□□□ 0.32
HDAC6-227ENST00000485102 HOXB7P09629 217 aa17.04■□□□□ 0.32
HDAC6-227ENST00000485102 HCLS1P14317 486 aaPredicted RBP17.04■□□□□ 0.32
HDAC6-227ENST00000485102 GMPSP49915 693 aaPredicted RBP17.04■□□□□ 0.32
HDAC6-227ENST00000485102 SAPCD2Q86UD0 394 aa17.04■□□□□ 0.32
HDAC6-227ENST00000485102 TRMT112Q9UI30 125 aaKnown RBP17.04■□□□□ 0.32
HDAC6-227ENST00000485102 AIMP1Q12904 312 aaKnown RBP17.03■□□□□ 0.32
HDAC6-227ENST00000485102 CYP4F22Q6NT55 531 aa17.03■□□□□ 0.32
HDAC6-227ENST00000485102 SF3B3Q15393 1217 aaKnown RBP17.02■□□□□ 0.32
HDAC6-227ENST00000485102 PLBD2Q8NHP8 589 aa17.02■□□□□ 0.32
HDAC6-227ENST00000485102 BEGAINQ9BUH8 593 aa17.02■□□□□ 0.32
HDAC6-227ENST00000485102 CA12O43570 354 aa17.01■□□□□ 0.31
HDAC6-227ENST00000485102 HIRAP54198 1017 aaPredicted RBP17.01■□□□□ 0.31
HDAC6-227ENST00000485102 TRIM28Q13263 835 aaKnown RBP17.01■□□□□ 0.31
HDAC6-227ENST00000485102 CDC37L1Q7L3B6 337 aa17.01■□□□□ 0.31
HDAC6-227ENST00000485102 DPF2Q92785 391 aa17.01■□□□□ 0.31
HDAC6-227ENST00000485102 ABHD8Q96I13 439 aa17.01■□□□□ 0.31
HDAC6-227ENST00000485102 ISCA1Q9BUE6 129 aa17.01■□□□□ 0.31
HDAC6-227ENST00000485102 LRRC37AA6NMS7 1700 aa17■□□□□ 0.31
HDAC6-227ENST00000485102 YDJCA8MPS7 323 aa17■□□□□ 0.31
HDAC6-227ENST00000485102 CELF2O95319 508 aaKnown RBP17■□□□□ 0.31
HDAC6-227ENST00000485102 ANKRD13DQ6ZTN6 518 aa17■□□□□ 0.31
HDAC6-227ENST00000485102 BCL2L13Q9BXK5 485 aa17■□□□□ 0.31
HDAC6-227ENST00000485102 CNOT7Q9UIV1 285 aaKnown RBP17■□□□□ 0.31
HDAC6-227ENST00000485102 TRIM35Q9UPQ4 493 aa17■□□□□ 0.31
HDAC6-227ENST00000485102 DUOX1Q9NRD9 1551 aa16.99■□□□□ 0.31
HDAC6-227ENST00000485102 RAD17O75943 681 aa16.99■□□□□ 0.31
HDAC6-227ENST00000485102 NECTIN2Q92692 538 aa16.99■□□□□ 0.31
HDAC6-227ENST00000485102 GLIS2Q9BZE0 524 aaPredicted RBP16.99■□□□□ 0.31
HDAC6-227ENST00000485102 CHPF2Q9P2E5 772 aa16.99■□□□□ 0.31
HDAC6-227ENST00000485102 DBF4Q9UBU7 674 aaPredicted RBP16.99■□□□□ 0.31
HDAC6-227ENST00000485102 TAF1P21675 1872 aa16.99■□□□□ 0.31
HDAC6-227ENST00000485102 H7C1D1 291 aa16.98■□□□□ 0.31
HDAC6-227ENST00000485102 BRPF1P55201 1214 aaPredicted RBP16.98■□□□□ 0.31
HDAC6-227ENST00000485102 KRT24Q2M2I5 525 aa16.98■□□□□ 0.31
HDAC6-227ENST00000485102 PAXIP1Q6ZW49 1069 aaPredicted RBP16.98■□□□□ 0.31
HDAC6-227ENST00000485102 TRPM4Q8TD43 1214 aa16.98■□□□□ 0.31
HDAC6-227ENST00000485102 RUNDC1Q96C34 613 aa16.98■□□□□ 0.31
HDAC6-227ENST00000485102 MYBBP1AQ9BQG0 1328 aaKnown RBP16.97■□□□□ 0.31
HDAC6-227ENST00000485102 WASHC4Q2M389 1173 aa16.97■□□□□ 0.31
HDAC6-227ENST00000485102 HDGFL1Q5TGJ6 251 aa16.97■□□□□ 0.31
HDAC6-227ENST00000485102 CFAP44Q96MT7 982 aa16.97■□□□□ 0.31
HDAC6-227ENST00000485102 HYPKQ9NX55 129 aa16.97■□□□□ 0.31
HDAC6-227ENST00000485102 DDX60Q8IY21 1712 aaKnown RBP16.96■□□□□ 0.31
HDAC6-227ENST00000485102 AOC2O75106 756 aa16.96■□□□□ 0.31
HDAC6-227ENST00000485102 RPS12P25398 132 aaKnown RBP16.96■□□□□ 0.31
HDAC6-227ENST00000485102 NEUROD2Q15784 382 aa16.96■□□□□ 0.31
HDAC6-227ENST00000485102 CELF1Q92879 486 aaKnown RBP16.96■□□□□ 0.31
HDAC6-227ENST00000485102 FAM89AQ96GI7 184 aa16.96■□□□□ 0.31
HDAC6-227ENST00000485102 NSFL1CQ9UNZ2 370 aaKnown RBP16.96■□□□□ 0.31
HDAC6-227ENST00000485102 RGS19P49795 217 aa16.95■□□□□ 0.3
HDAC6-227ENST00000485102 MICALL2Q8IY33 904 aa16.95■□□□□ 0.3
HDAC6-227ENST00000485102 PSMD14O00487 310 aa16.94■□□□□ 0.3
HDAC6-227ENST00000485102 RPS8P62241 208 aaKnown RBP16.94■□□□□ 0.3
HDAC6-227ENST00000485102 NOGQ13253 232 aa16.94■□□□□ 0.3
HDAC6-227ENST00000485102 GRM1Q13255 1194 aa16.94■□□□□ 0.3
HDAC6-227ENST00000485102 PODXL2Q9NZ53 605 aa16.94■□□□□ 0.3
HDAC6-227ENST00000485102 POLLQ9UGP5 575 aa16.94■□□□□ 0.3
HDAC6-227ENST00000485102 POLR2AP24928 1970 aaKnown RBP16.94■□□□□ 0.3
HDAC6-227ENST00000485102 SHTN1A0MZ66 631 aa16.93■□□□□ 0.3
HDAC6-227ENST00000485102 HSP90B1P14625 803 aaKnown RBP16.93■□□□□ 0.3
HDAC6-227ENST00000485102 DUSP27Q5VZP5 1158 aa16.93■□□□□ 0.3
HDAC6-227ENST00000485102 CCDC146Q8IYE0 955 aa16.93■□□□□ 0.3
HDAC6-227ENST00000485102 EYA3Q99504 573 aa16.93■□□□□ 0.3
HDAC6-227ENST00000485102 ZBTB12Q9Y330 459 aaPredicted RBP16.93■□□□□ 0.3
HDAC6-227ENST00000485102 LAS1LQ9Y4W2 734 aaKnown RBP16.93■□□□□ 0.3
HDAC6-227ENST00000485102 ATP5J2-PTCD1G3V325 749 aa16.92■□□□□ 0.3
HDAC6-227ENST00000485102 IRS4O14654 1257 aaPredicted RBP16.92■□□□□ 0.3
HDAC6-227ENST00000485102 ZNF853P0CG23 659 aa16.92■□□□□ 0.3
HDAC6-227ENST00000485102 GPSM2P81274 684 aa16.92■□□□□ 0.3
HDAC6-227ENST00000485102 SAMD7Q7Z3H4 446 aa16.92■□□□□ 0.3
HDAC6-227ENST00000485102 USP48Q86UV5 1035 aa16.92■□□□□ 0.3
HDAC6-227ENST00000485102 ZBTB38Q8NAP3 1195 aaPredicted RBP16.92■□□□□ 0.3
HDAC6-227ENST00000485102 TBC1D16Q8TBP0 767 aa16.92■□□□□ 0.3
HDAC6-227ENST00000485102 ADAMTS8Q9UP79 889 aa16.92■□□□□ 0.3
HDAC6-227ENST00000485102 CASP8AP2Q9UKL3 1982 aa16.91■□□□□ 0.3
HDAC6-227ENST00000485102 C6orf229H3BNL8 230 aa16.91■□□□□ 0.3
HDAC6-227ENST00000485102 VIL1P09327 827 aaKnown RBP16.91■□□□□ 0.3
HDAC6-227ENST00000485102 WDR43Q15061 677 aaKnown RBP eCLIP16.91■□□□□ 0.3
HDAC6-227ENST00000485102 DBNDD1Q9H9R9 158 aa16.91■□□□□ 0.3
HDAC6-227ENST00000485102 RTL9Q8NET4 1388 aa16.9■□□□□ 0.3
HDAC6-227ENST00000485102 ZNF609O15014 1411 aa16.9■□□□□ 0.3
HDAC6-227ENST00000485102 ECE2O60344 883 aa16.9■□□□□ 0.3
HDAC6-227ENST00000485102 HUNKP57058 714 aa16.9■□□□□ 0.3
HDAC6-227ENST00000485102 KRT26Q7Z3Y9 468 aa16.9■□□□□ 0.3
HDAC6-227ENST00000485102 ZC3H12CQ9C0D7 883 aaKnown RBP16.9■□□□□ 0.3
HDAC6-227ENST00000485102 ZNF408Q9H9D4 720 aa16.9■□□□□ 0.3
HDAC6-227ENST00000485102 MBIPQ9NS73 344 aa16.9■□□□□ 0.3
HDAC6-227ENST00000485102 RIMBP2O15034 1052 aa16.89■□□□□ 0.29
HDAC6-227ENST00000485102 TBC1D10BQ4KMP7 808 aaPredicted RBP16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms