RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ARHGAP4P98171 946 aa11.03□□□□□ -0.64
USP40-213ENST00000483216 DNM1Q05193 864 aaKnown RBP11.03□□□□□ -0.64
USP40-213ENST00000483216 AAMPQ13685 434 aa11.03□□□□□ -0.64
USP40-213ENST00000483216 AEBP1Q8IUX7 1158 aa11.03□□□□□ -0.64
USP40-213ENST00000483216 GALNT6Q8NCL4 622 aa11.03□□□□□ -0.64
USP40-213ENST00000483216 EDARADDQ8WWZ3 215 aa11.03□□□□□ -0.64
USP40-213ENST00000483216 MDFIQ99750 246 aa11.03□□□□□ -0.64
USP40-213ENST00000483216 ENAMQ9NRM1 1142 aa11.03□□□□□ -0.64
USP40-213ENST00000483216 ZFATQ9P243 1243 aa11.03□□□□□ -0.64
USP40-213ENST00000483216 TARSP26639 723 aaKnown RBP11.02□□□□□ -0.65
USP40-213ENST00000483216 NLRP13Q86W25 1043 aa11.02□□□□□ -0.65
USP40-213ENST00000483216 POLIQ9UNA4 740 aa11.02□□□□□ -0.65
USP40-213ENST00000483216 KRT25Q7Z3Z0 450 aa11.01□□□□□ -0.65
USP40-213ENST00000483216 ELOA3CA0A087WX78 387 aaPredicted RBP11□□□□□ -0.65
USP40-213ENST00000483216 ELOA3DA6NLF2 546 aaPredicted RBP11□□□□□ -0.65
USP40-213ENST00000483216 RARAP10276 462 aa11□□□□□ -0.65
USP40-213ENST00000483216 USP5P45974 858 aa11□□□□□ -0.65
USP40-213ENST00000483216 ELOA3BQ3SY89 546 aa11□□□□□ -0.65
USP40-213ENST00000483216 PDE12Q6L8Q7 609 aaKnown RBP11□□□□□ -0.65
USP40-213ENST00000483216 ELOA3Q8NG57 546 aa11□□□□□ -0.65
USP40-213ENST00000483216 CCDC87Q9NVE4 849 aa11□□□□□ -0.65
USP40-213ENST00000483216 XKR5Q6UX68 686 aa10.99□□□□□ -0.65
USP40-213ENST00000483216 GGNBP2Q9H3C7 697 aa10.99□□□□□ -0.65
USP40-213ENST00000483216 SHISA8B8ZZ34 492 aa10.98□□□□□ -0.65
USP40-213ENST00000483216 DHX32Q7L7V1 743 aaKnown RBP10.98□□□□□ -0.65
USP40-213ENST00000483216 TTC16Q8NEE8 873 aa10.98□□□□□ -0.65
USP40-213ENST00000483216 STK17AQ9UEE5 414 aa10.98□□□□□ -0.65
USP40-213ENST00000483216 BRPF3Q9ULD4 1205 aa10.98□□□□□ -0.65
USP40-213ENST00000483216 FAM181BA6NEQ2 426 aa10.97□□□□□ -0.65
USP40-213ENST00000483216 ALAS2P22557 587 aa10.97□□□□□ -0.65
USP40-213ENST00000483216 EHHADHQ08426 723 aa10.97□□□□□ -0.65
USP40-213ENST00000483216 PCSK7Q16549 785 aa10.97□□□□□ -0.65
USP40-213ENST00000483216 GJD3Q8N144 294 aa10.97□□□□□ -0.65
USP40-213ENST00000483216 BTBD6Q96KE9 485 aa10.97□□□□□ -0.65
USP40-213ENST00000483216 UBE2OQ9C0C9 1292 aaKnown RBP10.97□□□□□ -0.65
USP40-213ENST00000483216 TLR7Q9NYK1 1049 aaKnown RBP10.97□□□□□ -0.65
USP40-213ENST00000483216 NDUFB5O43674 189 aa10.96□□□□□ -0.65
USP40-213ENST00000483216 MMP20O60882 483 aa10.96□□□□□ -0.65
USP40-213ENST00000483216 ADH7P40394 386 aa10.96□□□□□ -0.65
USP40-213ENST00000483216 C8orf34Q49A92 452 aa10.96□□□□□ -0.65
USP40-213ENST00000483216 NEDD1Q8NHV4 660 aa10.96□□□□□ -0.65
USP40-213ENST00000483216 TRPM4Q8TD43 1214 aa10.96□□□□□ -0.65
USP40-213ENST00000483216 CITED4Q96RK1 184 aa10.96□□□□□ -0.65
USP40-213ENST00000483216 DNAJB12Q9NXW2 375 aaKnown RBP10.96□□□□□ -0.65
USP40-213ENST00000483216 BIN2Q9UBW5 565 aaPredicted RBP10.96□□□□□ -0.65
USP40-213ENST00000483216 SOX18P35713 384 aa10.95□□□□□ -0.66
USP40-213ENST00000483216 ZNF438Q7Z4V0 828 aa10.95□□□□□ -0.66
USP40-213ENST00000483216 ELP3Q9H9T3 547 aa10.95□□□□□ -0.66
USP40-213ENST00000483216 PSAPP07602 524 aa10.94□□□□□ -0.66
USP40-213ENST00000483216 HOXD8P13378 290 aaPredicted RBP10.94□□□□□ -0.66
USP40-213ENST00000483216 NRLP54845 237 aa10.94□□□□□ -0.66
USP40-213ENST00000483216 TTC39BQ5VTQ0 682 aaPredicted RBP10.94□□□□□ -0.66
USP40-213ENST00000483216 IGFLR1Q9H665 355 aa10.94□□□□□ -0.66
USP40-213ENST00000483216 ABI2Q9NYB9 513 aaPredicted RBP10.94□□□□□ -0.66
USP40-213ENST00000483216 ADAMTS8Q9UP79 889 aa10.94□□□□□ -0.66
USP40-213ENST00000483216 GPLD1P80108 840 aa10.93□□□□□ -0.66
USP40-213ENST00000483216 PLAURQ03405 335 aa10.93□□□□□ -0.66
USP40-213ENST00000483216 TBC1D8BQ0IIM8 1120 aa10.93□□□□□ -0.66
USP40-213ENST00000483216 CHSY3Q70JA7 882 aa10.93□□□□□ -0.66
USP40-213ENST00000483216 OR13H1Q8NG92 308 aa10.93□□□□□ -0.66
USP40-213ENST00000483216 TMEM63CQ9P1W3 806 aa10.93□□□□□ -0.66
USP40-213ENST00000483216 SLC6A14Q9UN76 642 aa10.93□□□□□ -0.66
USP40-213ENST00000483216 A6NHS1 94 aa10.92□□□□□ -0.66
USP40-213ENST00000483216 ZBTB42B2RXF5 422 aa10.92□□□□□ -0.66
USP40-213ENST00000483216 AMPD1P23109 780 aa10.92□□□□□ -0.66
USP40-213ENST00000483216 KANK3Q6NY19 840 aa10.92□□□□□ -0.66
USP40-213ENST00000483216 PDE3BQ13370 1112 aa10.91□□□□□ -0.66
USP40-213ENST00000483216 RBCK1Q9BYM8 510 aa10.91□□□□□ -0.66
USP40-213ENST00000483216 DCTN4Q9UJW0 460 aa10.91□□□□□ -0.66
USP40-213ENST00000483216 STARD13Q9Y3M8 1113 aa10.91□□□□□ -0.66
USP40-213ENST00000483216 HOXB4P17483 251 aaPredicted RBP10.9□□□□□ -0.66
USP40-213ENST00000483216 FAM129BQ96TA1 746 aa10.9□□□□□ -0.66
USP40-213ENST00000483216 TNFRSF21O75509 655 aa10.88□□□□□ -0.67
USP40-213ENST00000483216 DGKGP49619 791 aa10.88□□□□□ -0.67
USP40-213ENST00000483216 MARSP56192 900 aaKnown RBP10.88□□□□□ -0.67
USP40-213ENST00000483216 SND1Q7KZF4 910 aaKnown RBP eCLIP10.88□□□□□ -0.67
USP40-213ENST00000483216 CNTN3Q9P232 1028 aa10.88□□□□□ -0.67
USP40-213ENST00000483216 NAGPAQ9UK23 515 aa10.88□□□□□ -0.67
USP40-213ENST00000483216 LOC102724428A0A0B4J2F2 783 aa10.87□□□□□ -0.67
USP40-213ENST00000483216 SIK1P57059 783 aa10.87□□□□□ -0.67
USP40-213ENST00000483216 C20orf204Q6ZNR8 217 aa10.87□□□□□ -0.67
USP40-213ENST00000483216 FAM35AQ86V20 835 aa10.87□□□□□ -0.67
USP40-213ENST00000483216 SNX29Q8TEQ0 813 aa10.87□□□□□ -0.67
USP40-213ENST00000483216 PMEPA1Q969W9 287 aa10.87□□□□□ -0.67
USP40-213ENST00000483216 RRAGCQ9HB90 399 aa10.87□□□□□ -0.67
USP40-213ENST00000483216 FRRS1LQ9P0K9 344 aa10.87□□□□□ -0.67
USP40-213ENST00000483216 PHF20L1A8MW92 1017 aa10.86□□□□□ -0.67
USP40-213ENST00000483216 KIF4AO95239 1232 aa10.86□□□□□ -0.67
USP40-213ENST00000483216 IGHA2P01877 340 aa10.86□□□□□ -0.67
USP40-213ENST00000483216 SNRPNP63162 240 aaKnown RBP10.86□□□□□ -0.67
USP40-213ENST00000483216 MLLT1Q03111 559 aaPredicted RBP10.86□□□□□ -0.67
USP40-213ENST00000483216 HYAL2Q12891 473 aa10.86□□□□□ -0.67
USP40-213ENST00000483216 MICALL1Q8N3F8 863 aa10.86□□□□□ -0.67
USP40-213ENST00000483216 C1orf127Q8N9H9 656 aa10.86□□□□□ -0.67
USP40-213ENST00000483216 DMRTB1Q96MA1 342 aa10.86□□□□□ -0.67
USP40-213ENST00000483216 CHRDQ9H2X0 955 aa10.86□□□□□ -0.67
USP40-213ENST00000483216 PRDM6Q9NQX0 595 aa10.86□□□□□ -0.67
USP40-213ENST00000483216 M0R082 166 aa10.85□□□□□ -0.67
USP40-213ENST00000483216 ALBP02768 609 aa10.85□□□□□ -0.67
USP40-213ENST00000483216 CYP2E1P05181 493 aaPredicted RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms