RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 DCAF8Q5TAQ9 597 aa10.26□□□□□ -0.77
USP54-213ENST00000481991 TTLL7Q6ZT98 887 aa10.26□□□□□ -0.77
USP54-213ENST00000481991 C3orf67Q6ZVT6 689 aa10.26□□□□□ -0.77
USP54-213ENST00000481991 SULF1Q8IWU6 871 aa10.26□□□□□ -0.77
USP54-213ENST00000481991 ARFGEF2Q9Y6D5 1785 aa10.26□□□□□ -0.77
USP54-213ENST00000481991 TNRC18O15417 2968 aaPredicted RBP10.26□□□□□ -0.77
USP54-213ENST00000481991 ERVV-1B6SEH8 477 aa10.25□□□□□ -0.77
USP54-213ENST00000481991 BBOX1O75936 387 aa10.25□□□□□ -0.77
USP54-213ENST00000481991 ZNF296Q8WUU4 475 aaPredicted RBP10.25□□□□□ -0.77
USP54-213ENST00000481991 ZNF428Q96B54 188 aa10.25□□□□□ -0.77
USP54-213ENST00000481991 MAP3K15Q6ZN16 1313 aa10.25□□□□□ -0.77
USP54-213ENST00000481991 THSD7BQ9C0I4 1608 aa10.25□□□□□ -0.77
USP54-213ENST00000481991 C6orf229H3BNL8 230 aa10.24□□□□□ -0.77
USP54-213ENST00000481991 PSMD14O00487 310 aa10.24□□□□□ -0.77
USP54-213ENST00000481991 SLC10A3P09131 477 aa10.24□□□□□ -0.77
USP54-213ENST00000481991 KIAA2012Q0VF49 1180 aa10.24□□□□□ -0.77
USP54-213ENST00000481991 MKRN3Q13064 507 aaKnown RBP10.24□□□□□ -0.77
USP54-213ENST00000481991 TTLL12Q14166 644 aaPredicted RBP10.24□□□□□ -0.77
USP54-213ENST00000481991 TAF7Q15545 349 aaPredicted RBP10.24□□□□□ -0.77
USP54-213ENST00000481991 DOK7Q18PE1 504 aa10.24□□□□□ -0.77
USP54-213ENST00000481991 WASHC4Q2M389 1173 aa10.24□□□□□ -0.77
USP54-213ENST00000481991 AMER1Q5JTC6 1135 aaPredicted RBP10.24□□□□□ -0.77
USP54-213ENST00000481991 DDX46Q7L014 1031 aaKnown RBP10.24□□□□□ -0.77
USP54-213ENST00000481991 SP8Q8IXZ3 490 aa10.24□□□□□ -0.77
USP54-213ENST00000481991 UTP14AQ9BVJ6 771 aaKnown RBP10.24□□□□□ -0.77
USP54-213ENST00000481991 DBNDD1Q9H9R9 158 aa10.24□□□□□ -0.77
USP54-213ENST00000481991 KIF7Q2M1P5 1343 aa10.24□□□□□ -0.77
USP54-213ENST00000481991 UBR2Q8IWV8 1755 aa10.24□□□□□ -0.77
USP54-213ENST00000481991 YDJCA8MPS7 323 aa10.23□□□□□ -0.77
USP54-213ENST00000481991 RGL2O15211 777 aa10.23□□□□□ -0.77
USP54-213ENST00000481991 HCLS1P14317 486 aaPredicted RBP10.23□□□□□ -0.77
USP54-213ENST00000481991 REM2Q8IYK8 340 aaPredicted RBP10.23□□□□□ -0.77
USP54-213ENST00000481991 NSFL1CQ9UNZ2 370 aaKnown RBP10.23□□□□□ -0.77
USP54-213ENST00000481991 EGFRP00533 1210 aa10.22□□□□□ -0.77
USP54-213ENST00000481991 U2AF1L5P0DN76 240 aaPredicted RBP10.22□□□□□ -0.77
USP54-213ENST00000481991 U2AF1Q01081 240 aaKnown RBP eCLIP10.22□□□□□ -0.77
USP54-213ENST00000481991 CDCA5Q96FF9 252 aa10.22□□□□□ -0.77
USP54-213ENST00000481991 RTFDC1Q9BY42 306 aaPredicted RBP10.22□□□□□ -0.77
USP54-213ENST00000481991 KCNQ5Q9NR82 932 aa10.22□□□□□ -0.77
USP54-213ENST00000481991 ABCC4O15439 1325 aa10.22□□□□□ -0.77
USP54-213ENST00000481991 UBN2Q6ZU65 1347 aa10.22□□□□□ -0.77
USP54-213ENST00000481991 CDHR2Q9BYE9 1310 aa10.22□□□□□ -0.77
USP54-213ENST00000481991 UBE2Q2LH0YL09 131 aa10.21□□□□□ -0.77
USP54-213ENST00000481991 NTSR2O95665 410 aa10.21□□□□□ -0.77
USP54-213ENST00000481991 KIF4BQ2VIQ3 1234 aa10.21□□□□□ -0.77
USP54-213ENST00000481991 FBXO46Q6PJ61 603 aaPredicted RBP10.21□□□□□ -0.77
USP54-213ENST00000481991 MOB2Q70IA6 237 aa10.21□□□□□ -0.77
USP54-213ENST00000481991 ZNF34Q8IZ26 560 aa10.21□□□□□ -0.77
USP54-213ENST00000481991 DPF2Q92785 391 aa10.21□□□□□ -0.77
USP54-213ENST00000481991 CFAP53Q96M91 514 aa10.21□□□□□ -0.77
USP54-213ENST00000481991 THUMPD2Q9BTF0 503 aaKnown RBP10.21□□□□□ -0.77
USP54-213ENST00000481991 GGA3Q9NZ52 723 aa10.21□□□□□ -0.77
USP54-213ENST00000481991 SCAF8Q9UPN6 1271 aaKnown RBP10.21□□□□□ -0.77
USP54-213ENST00000481991 NUDCQ9Y266 331 aa10.21□□□□□ -0.77
USP54-213ENST00000481991 GPR25O00155 361 aa10.2□□□□□ -0.78
USP54-213ENST00000481991 ASTN2O75129 1339 aaPredicted RBP10.2□□□□□ -0.78
USP54-213ENST00000481991 EIF2S2P20042 333 aaKnown RBP10.2□□□□□ -0.78
USP54-213ENST00000481991 AIMP1Q12904 312 aaKnown RBP10.2□□□□□ -0.78
USP54-213ENST00000481991 SCARF1Q14162 830 aa10.2□□□□□ -0.78
USP54-213ENST00000481991 PARP10Q53GL7 1025 aa10.2□□□□□ -0.78
USP54-213ENST00000481991 ANGEL2Q5VTE6 544 aaKnown RBP10.2□□□□□ -0.78
USP54-213ENST00000481991 PRAMEF18Q5VWM3 479 aa10.2□□□□□ -0.78
USP54-213ENST00000481991 GIGYF2Q6Y7W6 1299 aaKnown RBP10.2□□□□□ -0.78
USP54-213ENST00000481991 RASAL3Q86YV0 1011 aa10.2□□□□□ -0.78
USP54-213ENST00000481991 SNED1Q8TER0 1413 aa10.2□□□□□ -0.78
USP54-213ENST00000481991 CEMIPQ8WUJ3 1361 aa10.2□□□□□ -0.78
USP54-213ENST00000481991 AKAP11Q9UKA4 1901 aa10.19□□□□□ -0.78
USP54-213ENST00000481991 BCORQ6W2J9 1755 aa10.19□□□□□ -0.78
USP54-213ENST00000481991 ECE2O60344 883 aa10.19□□□□□ -0.78
USP54-213ENST00000481991 FKTNO75072 461 aa10.19□□□□□ -0.78
USP54-213ENST00000481991 NEFMP07197 916 aa10.19□□□□□ -0.78
USP54-213ENST00000481991 GRAPQ13588 217 aa10.19□□□□□ -0.78
USP54-213ENST00000481991 PRKG1Q13976 671 aa10.19□□□□□ -0.78
USP54-213ENST00000481991 GRAPLQ8TC17 118 aaPredicted RBP10.19□□□□□ -0.78
USP54-213ENST00000481991 PCGF6Q9BYE7 350 aa10.19□□□□□ -0.78
USP54-213ENST00000481991 TRMT112Q9UI30 125 aaKnown RBP10.19□□□□□ -0.78
USP54-213ENST00000481991 POTEFA5A3E0 1075 aa10.18□□□□□ -0.78
USP54-213ENST00000481991 RPS12P25398 132 aaKnown RBP10.18□□□□□ -0.78
USP54-213ENST00000481991 SLC10A5Q5PT55 438 aa10.18□□□□□ -0.78
USP54-213ENST00000481991 EYA3Q99504 573 aa10.18□□□□□ -0.78
USP54-213ENST00000481991 ZC3H12CQ9C0D7 883 aaKnown RBP10.18□□□□□ -0.78
USP54-213ENST00000481991 RSPH6AQ9H0K4 717 aa10.18□□□□□ -0.78
USP54-213ENST00000481991 TIMELESSQ9UNS1 1208 aa10.18□□□□□ -0.78
USP54-213ENST00000481991 TRIM17Q9Y577 477 aa10.18□□□□□ -0.78
USP54-213ENST00000481991 POLR2AP24928 1970 aaKnown RBP10.17□□□□□ -0.78
USP54-213ENST00000481991 DLL1O00548 723 aa10.17□□□□□ -0.78
USP54-213ENST00000481991 FXR1P51114 621 aaKnown RBP eCLIP10.17□□□□□ -0.78
USP54-213ENST00000481991 PNISRQ8TF01 805 aaKnown RBP10.17□□□□□ -0.78
USP54-213ENST00000481991 NECTIN2Q92692 538 aa10.17□□□□□ -0.78
USP54-213ENST00000481991 COLQQ9Y215 455 aaPredicted RBP10.17□□□□□ -0.78
USP54-213ENST00000481991 HTATSF1O43719 755 aaKnown RBP10.16□□□□□ -0.78
USP54-213ENST00000481991 ANXA1P04083 346 aa10.16□□□□□ -0.78
USP54-213ENST00000481991 EN2P19622 333 aaPredicted RBP10.16□□□□□ -0.78
USP54-213ENST00000481991 GPSM2P81274 684 aa10.16□□□□□ -0.78
USP54-213ENST00000481991 TCIRG1Q13488 830 aa10.16□□□□□ -0.78
USP54-213ENST00000481991 RTL5Q5HYW3 569 aaPredicted RBP10.16□□□□□ -0.78
USP54-213ENST00000481991 SLC17A8Q8NDX2 589 aa10.16□□□□□ -0.78
USP54-213ENST00000481991 POLLQ9UGP5 575 aa10.16□□□□□ -0.78
USP54-213ENST00000481991 MYCP01106 439 aaPredicted RBP10.15□□□□□ -0.78
USP54-213ENST00000481991 NF2P35240 595 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms