RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 KIF1BPQ96EK5 621 aa12.59□□□□□ -0.39
USP39-215ENST00000481409 DDX60Q8IY21 1712 aaKnown RBP12.59□□□□□ -0.39
USP39-215ENST00000481409 SURF6O75683 361 aaKnown RBP12.58□□□□□ -0.4
USP39-215ENST00000481409 CIAO1O76071 339 aa12.58□□□□□ -0.4
USP39-215ENST00000481409 G3BP1Q13283 466 aaKnown RBP eCLIP12.58□□□□□ -0.4
USP39-215ENST00000481409 IFIT5Q13325 482 aaKnown RBP12.58□□□□□ -0.4
USP39-215ENST00000481409 EPHA10Q5JZY3 1008 aa12.58□□□□□ -0.4
USP39-215ENST00000481409 CHD1LQ86WJ1 897 aa12.58□□□□□ -0.4
USP39-215ENST00000481409 CNBD1Q8NA66 436 aa12.58□□□□□ -0.4
USP39-215ENST00000481409 NLRP3Q96P20 1036 aa12.58□□□□□ -0.4
USP39-215ENST00000481409 ANO8Q9HCE9 1232 aaPredicted RBP12.58□□□□□ -0.4
USP39-215ENST00000481409 NRXN2Q9P2S2 1712 aa12.58□□□□□ -0.4
USP39-215ENST00000481409 PDZRN3Q9UPQ7 1066 aa12.58□□□□□ -0.4
USP39-215ENST00000481409 ANKRD18BA2A2Z9 1011 aa12.57□□□□□ -0.4
USP39-215ENST00000481409 POLRMTO00411 1230 aaKnown RBP12.57□□□□□ -0.4
USP39-215ENST00000481409 NPHP1O15259 732 aa12.57□□□□□ -0.4
USP39-215ENST00000481409 SERPINB2P05120 415 aa12.57□□□□□ -0.4
USP39-215ENST00000481409 RFX5P48382 616 aaPredicted RBP12.57□□□□□ -0.4
USP39-215ENST00000481409 BICDL1Q6ZP65 573 aa12.57□□□□□ -0.4
USP39-215ENST00000481409 LRRCC1Q9C099 1032 aa12.57□□□□□ -0.4
USP39-215ENST00000481409 IL15P40933 162 aaPredicted RBP12.56□□□□□ -0.4
USP39-215ENST00000481409 PTPN12Q05209 780 aaKnown RBP12.56□□□□□ -0.4
USP39-215ENST00000481409 ERFEQ4G0M1 354 aa12.56□□□□□ -0.4
USP39-215ENST00000481409 RTL5Q5HYW3 569 aaPredicted RBP12.56□□□□□ -0.4
USP39-215ENST00000481409 ANKRD45Q5TZF3 282 aa12.56□□□□□ -0.4
USP39-215ENST00000481409 CDC5LQ99459 802 aaKnown RBP12.56□□□□□ -0.4
USP39-215ENST00000481409 PARP3Q9Y6F1 533 aa12.56□□□□□ -0.4
USP39-215ENST00000481409 ITGA6P23229 1130 aa12.55□□□□□ -0.4
USP39-215ENST00000481409 TAF7LQ5H9L4 462 aa12.55□□□□□ -0.4
USP39-215ENST00000481409 PRR5LQ6MZQ0 368 aa12.55□□□□□ -0.4
USP39-215ENST00000481409 SMIM5Q71RC9 77 aa12.55□□□□□ -0.4
USP39-215ENST00000481409 NUTM1Q86Y26 1132 aa12.55□□□□□ -0.4
USP39-215ENST00000481409 RHPN1Q8TCX5 695 aa12.55□□□□□ -0.4
USP39-215ENST00000481409 JARID2Q92833 1246 aaPredicted RBP12.55□□□□□ -0.4
USP39-215ENST00000481409 GPR108Q9NPR9 543 aa12.55□□□□□ -0.4
USP39-215ENST00000481409 CHMP3Q9Y3E7 222 aa12.55□□□□□ -0.4
USP39-215ENST00000481409 KLRG2A4D1S0 409 aaPredicted RBP12.54□□□□□ -0.4
USP39-215ENST00000481409 FAM177BA6PVY3 158 aa12.54□□□□□ -0.4
USP39-215ENST00000481409 EYA2O00167 538 aa12.54□□□□□ -0.4
USP39-215ENST00000481409 HCLS1P14317 486 aaPredicted RBP12.54□□□□□ -0.4
USP39-215ENST00000481409 OS9Q13438 667 aaPredicted RBP12.54□□□□□ -0.4
USP39-215ENST00000481409 CLASRPQ8N2M8 674 aaKnown RBP12.54□□□□□ -0.4
USP39-215ENST00000481409 BRIP1Q9BX63 1249 aa12.54□□□□□ -0.4
USP39-215ENST00000481409 EXOC6BQ9Y2D4 811 aa12.54□□□□□ -0.4
USP39-215ENST00000481409 PDE6BP35913 854 aa12.53□□□□□ -0.4
USP39-215ENST00000481409 IGHMBP2P38935 993 aaKnown RBP12.53□□□□□ -0.4
USP39-215ENST00000481409 DDR1Q08345 913 aa12.53□□□□□ -0.4
USP39-215ENST00000481409 FAM161AQ3B820 660 aa12.53□□□□□ -0.4
USP39-215ENST00000481409 CRY2Q49AN0 593 aa12.53□□□□□ -0.4
USP39-215ENST00000481409 POTEHQ6S545 545 aa12.53□□□□□ -0.4
USP39-215ENST00000481409 SYNE4Q8N205 404 aa12.53□□□□□ -0.4
USP39-215ENST00000481409 GREM2Q9H772 168 aa12.53□□□□□ -0.4
USP39-215ENST00000481409 AKAP2Q9Y2D5 859 aa12.53□□□□□ -0.4
USP39-215ENST00000481409 ABCC12Q96J65 1359 aa12.53□□□□□ -0.4
USP39-215ENST00000481409 LRP5O75197 1615 aa12.52□□□□□ -0.4
USP39-215ENST00000481409 MMP10P09238 476 aa12.52□□□□□ -0.41
USP39-215ENST00000481409 DDX46Q7L014 1031 aaKnown RBP12.52□□□□□ -0.41
USP39-215ENST00000481409 TMC4Q7Z404 712 aa12.52□□□□□ -0.41
USP39-215ENST00000481409 OSBPL3Q9H4L5 887 aa12.52□□□□□ -0.41
USP39-215ENST00000481409 AOX1Q06278 1338 aa12.52□□□□□ -0.41
USP39-215ENST00000481409 MROH5Q6ZUA9 1318 aa12.52□□□□□ -0.41
USP39-215ENST00000481409 LDHAL6AQ6ZMR3 332 aa12.51□□□□□ -0.41
USP39-215ENST00000481409 ANKRD18AQ8IVF6 992 aa12.51□□□□□ -0.41
USP39-215ENST00000481409 GPATCH3Q96I76 525 aa12.51□□□□□ -0.41
USP39-215ENST00000481409 MPHOSPH8Q99549 860 aa12.51□□□□□ -0.41
USP39-215ENST00000481409 LNPKQ9C0E8 428 aa12.51□□□□□ -0.41
USP39-215ENST00000481409 MTFR1LQ9H019 292 aa12.51□□□□□ -0.41
USP39-215ENST00000481409 BSDC1Q9NW68 430 aaPredicted RBP12.51□□□□□ -0.41
USP39-215ENST00000481409 CEP126Q9P2H0 1117 aa12.51□□□□□ -0.41
USP39-215ENST00000481409 PA2G4Q9UQ80 394 aaKnown RBP12.51□□□□□ -0.41
USP39-215ENST00000481409 CASZ1Q86V15 1759 aa12.51□□□□□ -0.41
USP39-215ENST00000481409 HOXA10P31260 410 aaPredicted RBP12.5□□□□□ -0.41
USP39-215ENST00000481409 ATG9AQ7Z3C6 839 aa12.5□□□□□ -0.41
USP39-215ENST00000481409 RBM17Q96I25 401 aaKnown RBP12.5□□□□□ -0.41
USP39-215ENST00000481409 CRAMP1Q96RY5 1269 aa12.5□□□□□ -0.41
USP39-215ENST00000481409 RIPOR2Q9Y4F9 1068 aa12.5□□□□□ -0.41
USP39-215ENST00000481409 TTC41PQ6P2S7 1318 aa12.49□□□□□ -0.41
USP39-215ENST00000481409 BBOX1O75936 387 aa12.49□□□□□ -0.41
USP39-215ENST00000481409 SASH1O94885 1247 aa12.49□□□□□ -0.41
USP39-215ENST00000481409 POLD1P28340 1107 aa12.49□□□□□ -0.41
USP39-215ENST00000481409 ALDH1B1P30837 517 aa12.49□□□□□ -0.41
USP39-215ENST00000481409 RPS8P62241 208 aaKnown RBP12.49□□□□□ -0.41
USP39-215ENST00000481409 GRAPQ13588 217 aa12.49□□□□□ -0.41
USP39-215ENST00000481409 GRAPLQ8TC17 118 aaPredicted RBP12.49□□□□□ -0.41
USP39-215ENST00000481409 RPGRQ92834 1020 aaKnown RBP12.49□□□□□ -0.41
USP39-215ENST00000481409 CNNM1Q9NRU3 951 aa12.49□□□□□ -0.41
USP39-215ENST00000481409 STAP2Q9UGK3 403 aa12.49□□□□□ -0.41
USP39-215ENST00000481409 EIF5BO60841 1220 aaKnown RBP12.48□□□□□ -0.41
USP39-215ENST00000481409 IFIT2P09913 472 aaKnown RBP12.48□□□□□ -0.41
USP39-215ENST00000481409 NPR1P16066 1061 aa12.48□□□□□ -0.41
USP39-215ENST00000481409 ANKRD2Q9GZV1 360 aa12.48□□□□□ -0.41
USP39-215ENST00000481409 SIL1Q9H173 461 aa12.48□□□□□ -0.41
USP39-215ENST00000481409 TNRC6CQ9HCJ0 1690 aaKnown RBP12.48□□□□□ -0.41
USP39-215ENST00000481409 SALL3Q9BXA9 1300 aa12.47□□□□□ -0.41
USP39-215ENST00000481409 ERC2O15083 957 aa12.47□□□□□ -0.41
USP39-215ENST00000481409 PDE8BO95263 885 aa12.47□□□□□ -0.41
USP39-215ENST00000481409 MX1P20591 662 aa12.47□□□□□ -0.41
USP39-215ENST00000481409 TNNI3KQ59H18 835 aa12.47□□□□□ -0.41
USP39-215ENST00000481409 METTL24Q5JXM2 366 aa12.47□□□□□ -0.41
USP39-215ENST00000481409 TICAM2Q86XR7 235 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms