RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 TCOF1Q13428 1488 aaKnown RBP9.5□□□□□ -0.89
VPS50-215ENST00000480943 SHANK2Q9UPX8 1470 aa9.5□□□□□ -0.89
VPS50-215ENST00000480943 DUOX2Q9NRD8 1548 aa9.5□□□□□ -0.89
VPS50-215ENST00000480943 DAPK1P53355 1430 aa9.49□□□□□ -0.89
VPS50-215ENST00000480943 PTPRKQ15262 1439 aa9.49□□□□□ -0.89
VPS50-215ENST00000480943 PHKA2P46019 1235 aa9.49□□□□□ -0.89
VPS50-215ENST00000480943 VAC14Q08AM6 782 aa9.49□□□□□ -0.89
VPS50-215ENST00000480943 TRIM28Q13263 835 aaKnown RBP9.49□□□□□ -0.89
VPS50-215ENST00000480943 PCDHB11Q9Y5F2 797 aa9.49□□□□□ -0.89
VPS50-215ENST00000480943 DEPDC5O75140 1603 aa9.49□□□□□ -0.89
VPS50-215ENST00000480943 TMEM132AQ24JP5 1023 aa9.48□□□□□ -0.89
VPS50-215ENST00000480943 FCHSD1Q86WN1 690 aa9.48□□□□□ -0.89
VPS50-215ENST00000480943 ARHGEF10LQ9HCE6 1279 aa9.48□□□□□ -0.89
VPS50-215ENST00000480943 CEP126Q9P2H0 1117 aa9.48□□□□□ -0.89
VPS50-215ENST00000480943 ABCC5O15440 1437 aa9.48□□□□□ -0.89
VPS50-215ENST00000480943 NCOA1Q15788 1441 aa9.48□□□□□ -0.89
VPS50-215ENST00000480943 PZPP20742 1482 aa9.47□□□□□ -0.89
VPS50-215ENST00000480943 ABCC3O15438 1527 aa9.47□□□□□ -0.89
VPS50-215ENST00000480943 C9orf172C9J069 976 aa9.47□□□□□ -0.89
VPS50-215ENST00000480943 ALAS2P22557 587 aa9.47□□□□□ -0.89
VPS50-215ENST00000480943 MSX1P28360 303 aa9.47□□□□□ -0.89
VPS50-215ENST00000480943 WASHC4Q2M389 1173 aa9.47□□□□□ -0.89
VPS50-215ENST00000480943 FAM182BQ5T319 152 aa9.47□□□□□ -0.89
VPS50-215ENST00000480943 ZSCAN10Q96SZ4 725 aaPredicted RBP9.47□□□□□ -0.89
VPS50-215ENST00000480943 CRISPLD1Q9H336 500 aa9.47□□□□□ -0.89
VPS50-215ENST00000480943 RNF112Q9ULX5 631 aa9.47□□□□□ -0.89
VPS50-215ENST00000480943 COG6Q9Y2V7 657 aa9.47□□□□□ -0.89
VPS50-215ENST00000480943 PCDHGC4Q9Y5F7 938 aa9.47□□□□□ -0.89
VPS50-215ENST00000480943 PRDM15P57071 1507 aaPredicted RBP9.46□□□□□ -0.89
VPS50-215ENST00000480943 KIF15Q9NS87 1388 aa9.46□□□□□ -0.9
VPS50-215ENST00000480943 SCTRP47872 440 aa9.45□□□□□ -0.9
VPS50-215ENST00000480943 IRAK1P51617 712 aa9.45□□□□□ -0.9
VPS50-215ENST00000480943 LAMC2Q13753 1193 aa9.45□□□□□ -0.9
VPS50-215ENST00000480943 ESYT1Q9BSJ8 1104 aa9.45□□□□□ -0.9
VPS50-215ENST00000480943 ERBINQ96RT1 1412 aa9.45□□□□□ -0.9
VPS50-215ENST00000480943 A2ML1A8K2U0 1454 aa9.45□□□□□ -0.9
VPS50-215ENST00000480943 SPATA31D1Q6ZQQ2 1576 aa9.45□□□□□ -0.9
VPS50-215ENST00000480943 FLIIQ13045 1269 aa9.44□□□□□ -0.9
VPS50-215ENST00000480943 TMEM214Q6NUQ4 689 aaKnown RBP9.44□□□□□ -0.9
VPS50-215ENST00000480943 WASHC2CQ9Y4E1 1318 aa9.44□□□□□ -0.9
VPS50-215ENST00000480943 PTPRTO14522 1441 aa9.44□□□□□ -0.9
VPS50-215ENST00000480943 PLA2R1Q13018 1463 aa9.44□□□□□ -0.9
VPS50-215ENST00000480943 UBR1Q8IWV7 1749 aa9.43□□□□□ -0.9
VPS50-215ENST00000480943 TNRQ92752 1358 aa9.43□□□□□ -0.9
VPS50-215ENST00000480943 GNRH1P01148 92 aa9.43□□□□□ -0.9
VPS50-215ENST00000480943 CENPCQ03188 943 aa9.43□□□□□ -0.9
VPS50-215ENST00000480943 SLFNL1Q499Z3 407 aa9.43□□□□□ -0.9
VPS50-215ENST00000480943 CNKSR1Q969H4 720 aa9.43□□□□□ -0.9
VPS50-215ENST00000480943 CCDC85AQ96PX6 553 aaPredicted RBP9.43□□□□□ -0.9
VPS50-215ENST00000480943 NEURL4Q96JN8 1562 aa9.42□□□□□ -0.9
VPS50-215ENST00000480943 ADGRL2O95490 1459 aa9.42□□□□□ -0.9
VPS50-215ENST00000480943 ERVK-7P63135 1459 aa9.42□□□□□ -0.9
VPS50-215ENST00000480943 WWC1Q8IX03 1113 aa9.42□□□□□ -0.9
VPS50-215ENST00000480943 FBXO41Q8TF61 875 aa9.42□□□□□ -0.9
VPS50-215ENST00000480943 RRP7BPQ9NSQ0 103 aa9.42□□□□□ -0.9
VPS50-215ENST00000480943 KLF15Q9UIH9 416 aa9.42□□□□□ -0.9
VPS50-215ENST00000480943 CHIC2Q9UKJ5 165 aa9.42□□□□□ -0.9
VPS50-215ENST00000480943 UGGT1Q9NYU2 1555 aa9.41□□□□□ -0.9
VPS50-215ENST00000480943 ANKRD30AQ9BXX3 1397 aa9.41□□□□□ -0.9
VPS50-215ENST00000480943 ELOA3CA0A087WX78 387 aaPredicted RBP9.41□□□□□ -0.9
VPS50-215ENST00000480943 ELOA3DA6NLF2 546 aaPredicted RBP9.41□□□□□ -0.9
VPS50-215ENST00000480943 RAD21O60216 631 aa9.41□□□□□ -0.9
VPS50-215ENST00000480943 MYCP01106 439 aaPredicted RBP9.41□□□□□ -0.9
VPS50-215ENST00000480943 SEMA3FQ13275 785 aa9.41□□□□□ -0.9
VPS50-215ENST00000480943 FAM50AQ14320 339 aaKnown RBP9.41□□□□□ -0.9
VPS50-215ENST00000480943 ELOA3BQ3SY89 546 aa9.41□□□□□ -0.9
VPS50-215ENST00000480943 NLRP8Q86W28 1048 aa9.41□□□□□ -0.9
VPS50-215ENST00000480943 ELOA3Q8NG57 546 aa9.41□□□□□ -0.9
VPS50-215ENST00000480943 POM121Q96HA1 1249 aa9.41□□□□□ -0.9
VPS50-215ENST00000480943 OSBPL3Q9H4L5 887 aa9.41□□□□□ -0.9
VPS50-215ENST00000480943 PCMTD2Q9NV79 361 aa9.41□□□□□ -0.9
VPS50-215ENST00000480943 PRR12Q9ULL5 1215 aa9.41□□□□□ -0.9
VPS50-215ENST00000480943 DOLKQ9UPQ8 538 aa9.41□□□□□ -0.9
VPS50-215ENST00000480943 RNF114Q9Y508 228 aa9.41□□□□□ -0.9
VPS50-215ENST00000480943 GCC2Q8IWJ2 1684 aa9.41□□□□□ -0.9
VPS50-215ENST00000480943 PIK3C2BO00750 1634 aa9.41□□□□□ -0.9
VPS50-215ENST00000480943 LTBP4Q8N2S1 1624 aa9.41□□□□□ -0.9
VPS50-215ENST00000480943 NLRP1Q9C000 1473 aa9.4□□□□□ -0.9
VPS50-215ENST00000480943 MYO5BQ9ULV0 1848 aa9.4□□□□□ -0.9
VPS50-215ENST00000480943 IQGAP1P46940 1657 aa9.4□□□□□ -0.9
VPS50-215ENST00000480943 TRAK2O60296 914 aa9.4□□□□□ -0.9
VPS50-215ENST00000480943 SOX11P35716 441 aa9.4□□□□□ -0.9
VPS50-215ENST00000480943 ZNF468Q5VIY5 522 aaPredicted RBP9.4□□□□□ -0.9
VPS50-215ENST00000480943 TXNRD3Q86VQ6 643 aa9.4□□□□□ -0.9
VPS50-215ENST00000480943 CDCA7Q9BWT1 371 aaPredicted RBP9.4□□□□□ -0.9
VPS50-215ENST00000480943 ZCCHC2Q9C0B9 1178 aaKnown RBP9.4□□□□□ -0.9
VPS50-215ENST00000480943 VWDEQ8N2E2 1590 aa9.4□□□□□ -0.9
VPS50-215ENST00000480943 UNC13BO14795 1591 aa9.39□□□□□ -0.91
VPS50-215ENST00000480943 ATXN7O15265 892 aaPredicted RBP9.39□□□□□ -0.91
VPS50-215ENST00000480943 NRG1Q02297 640 aaPredicted RBP9.39□□□□□ -0.91
VPS50-215ENST00000480943 ADGRE1Q14246 886 aa9.39□□□□□ -0.91
VPS50-215ENST00000480943 C4orf17Q53FE4 359 aa9.39□□□□□ -0.91
VPS50-215ENST00000480943 PPARGC1BQ86YN6 1023 aaKnown RBP9.39□□□□□ -0.91
VPS50-215ENST00000480943 PHTF2Q8N3S3 785 aa9.39□□□□□ -0.91
VPS50-215ENST00000480943 TP53INP1Q96A56 240 aa9.39□□□□□ -0.91
VPS50-215ENST00000480943 TET3O43151 1660 aa9.39□□□□□ -0.91
VPS50-215ENST00000480943 EFCAB6Q5THR3 1501 aa9.38□□□□□ -0.91
VPS50-215ENST00000480943 FAM229AH3BQW9 127 aa9.38□□□□□ -0.91
VPS50-215ENST00000480943 PRDM6Q9NQX0 595 aa9.38□□□□□ -0.91
VPS50-215ENST00000480943 KANK1Q14678 1352 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms