RNA–Protein interactions for RNA: ENST00000480923.5

VPS36-204, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 3

Gene VPS36, Length 614 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-204ENST00000480923 NEURL1BA8MQ27 555 aa25.71■■□□□ 1.71
VPS36-204ENST00000480923 CCDC88AQ3V6T2 1871 aa25.7■■□□□ 1.71
VPS36-204ENST00000480923 CDCA7LQ96GN5 454 aa25.7■■□□□ 1.7
VPS36-204ENST00000480923 PDE8AO60658 829 aa25.69■■□□□ 1.7
VPS36-204ENST00000480923 SP8Q8IXZ3 490 aa25.69■■□□□ 1.7
VPS36-204ENST00000480923 C16orf71Q8IYS4 520 aaPredicted RBP25.69■■□□□ 1.7
VPS36-204ENST00000480923 CDHR2Q9BYE9 1310 aa25.68■■□□□ 1.7
VPS36-204ENST00000480923 TMC4Q7Z404 712 aa25.68■■□□□ 1.7
VPS36-204ENST00000480923 CELF1Q92879 486 aaKnown RBP25.68■■□□□ 1.7
VPS36-204ENST00000480923 CCDC152Q4G0S7 254 aa25.67■■□□□ 1.7
VPS36-204ENST00000480923 LINS1Q8NG48 757 aa25.67■■□□□ 1.7
VPS36-204ENST00000480923 F6X3S4 739 aa25.66■■□□□ 1.7
VPS36-204ENST00000480923 TOMM70O94826 608 aa25.66■■□□□ 1.7
VPS36-204ENST00000480923 DPP8Q6V1X1 898 aaPredicted RBP25.66■■□□□ 1.7
VPS36-204ENST00000480923 JDP2Q8WYK2 163 aa25.66■■□□□ 1.7
VPS36-204ENST00000480923 CCDC85AQ96PX6 553 aaPredicted RBP25.66■■□□□ 1.7
VPS36-204ENST00000480923 DICER1Q9UPY3 1922 aaKnown RBP25.65■■□□□ 1.7
VPS36-204ENST00000480923 DDNO94850 711 aaPredicted RBP25.65■■□□□ 1.7
VPS36-204ENST00000480923 VEGFAP15692 232 aaPredicted RBP25.65■■□□□ 1.7
VPS36-204ENST00000480923 GCKRQ14397 625 aa25.65■■□□□ 1.7
VPS36-204ENST00000480923 UBE3BQ7Z3V4 1068 aa25.65■■□□□ 1.7
VPS36-204ENST00000480923 LARGE2Q8N3Y3 721 aa25.65■■□□□ 1.7
VPS36-204ENST00000480923 MPNDQ8N594 471 aa25.65■■□□□ 1.7
VPS36-204ENST00000480923 SUPT20HQ8NEM7 779 aa25.65■■□□□ 1.7
VPS36-204ENST00000480923 SEC31BQ9NQW1 1179 aa25.64■■□□□ 1.7
VPS36-204ENST00000480923 H7C1W4 665 aa25.63■■□□□ 1.69
VPS36-204ENST00000480923 PPIP5K2O43314 1243 aa25.63■■□□□ 1.69
VPS36-204ENST00000480923 RPS8P62241 208 aaKnown RBP25.63■■□□□ 1.69
VPS36-204ENST00000480923 ZNF541Q9H0D2 1346 aa25.63■■□□□ 1.69
VPS36-204ENST00000480923 CTSWP56202 376 aa25.62■■□□□ 1.69
VPS36-204ENST00000480923 RTFDC1Q9BY42 306 aaPredicted RBP25.62■■□□□ 1.69
VPS36-204ENST00000480923 CACNA1FO60840 1977 aa25.62■■□□□ 1.69
VPS36-204ENST00000480923 FZD9O00144 591 aa25.61■■□□□ 1.69
VPS36-204ENST00000480923 AOC3Q16853 763 aa25.61■■□□□ 1.69
VPS36-204ENST00000480923 BEND3Q5T5X7 828 aa25.61■■□□□ 1.69
VPS36-204ENST00000480923 TRMT2AQ8IZ69 625 aaKnown RBP25.61■■□□□ 1.69
VPS36-204ENST00000480923 MRPL50Q8N5N7 158 aaKnown RBP25.61■■□□□ 1.69
VPS36-204ENST00000480923 SLC4A10Q6U841 1118 aa25.6■■□□□ 1.69
VPS36-204ENST00000480923 NIM1KQ8IY84 436 aa25.6■■□□□ 1.69
VPS36-204ENST00000480923 RBM46Q8TBY0 533 aaKnown RBP25.6■■□□□ 1.69
VPS36-204ENST00000480923 VPS33BQ9H267 617 aa25.6■■□□□ 1.69
VPS36-204ENST00000480923 NSFL1CQ9UNZ2 370 aaKnown RBP25.6■■□□□ 1.69
VPS36-204ENST00000480923 TAF1P21675 1872 aa25.6■■□□□ 1.69
VPS36-204ENST00000480923 EIF6P56537 245 aaKnown RBP25.59■■□□□ 1.69
VPS36-204ENST00000480923 TTLL11Q8NHH1 800 aa25.59■■□□□ 1.69
VPS36-204ENST00000480923 SSH1Q8WYL5 1049 aa25.59■■□□□ 1.69
VPS36-204ENST00000480923 COL4A1P02462 1669 aa25.58■■□□□ 1.69
VPS36-204ENST00000480923 POTECB2RU33 542 aa25.58■■□□□ 1.69
VPS36-204ENST00000480923 ANKRD18AQ8IVF6 992 aa25.58■■□□□ 1.69
VPS36-204ENST00000480923 BCL2L13Q9BXK5 485 aa25.58■■□□□ 1.69
VPS36-204ENST00000480923 COL4A5P29400 1685 aa25.58■■□□□ 1.68
VPS36-204ENST00000480923 WDR90Q96KV7 1748 aa25.57■■□□□ 1.68
VPS36-204ENST00000480923 CASP7P55210 303 aa25.57■■□□□ 1.68
VPS36-204ENST00000480923 GPSM2P81274 684 aa25.57■■□□□ 1.68
VPS36-204ENST00000480923 CDC5LQ99459 802 aaKnown RBP25.57■■□□□ 1.68
VPS36-204ENST00000480923 GREM2Q9H772 168 aa25.57■■□□□ 1.68
VPS36-204ENST00000480923 PLA2G12BQ9BX93 195 aa25.56■■□□□ 1.68
VPS36-204ENST00000480923 GJA3Q9Y6H8 435 aa25.56■■□□□ 1.68
VPS36-204ENST00000480923 C6orf229H3BNL8 230 aa25.55■■□□□ 1.68
VPS36-204ENST00000480923 KIAA2012Q0VF49 1180 aa25.55■■□□□ 1.68
VPS36-204ENST00000480923 ALDH1L2Q3SY69 923 aa25.55■■□□□ 1.68
VPS36-204ENST00000480923 L3MBTL3Q96JM7 780 aaPredicted RBP25.55■■□□□ 1.68
VPS36-204ENST00000480923 SRCIN1Q9C0H9 1055 aa25.55■■□□□ 1.68
VPS36-204ENST00000480923 SMC4Q9NTJ3 1288 aa25.55■■□□□ 1.68
VPS36-204ENST00000480923 PTPRCP08575 1304 aa25.55■■□□□ 1.68
VPS36-204ENST00000480923 LRRC37AA6NMS7 1700 aa25.54■■□□□ 1.68
VPS36-204ENST00000480923 IQCA1LA6NCM1 817 aa25.54■■□□□ 1.68
VPS36-204ENST00000480923 ALDH1L1O75891 902 aa25.54■■□□□ 1.68
VPS36-204ENST00000480923 CT47B1P0C2W7 299 aaPredicted RBP25.54■■□□□ 1.68
VPS36-204ENST00000480923 HNRNPUQ00839 825 aaKnown RBP eCLIP25.54■■□□□ 1.68
VPS36-204ENST00000480923 GPC2Q8N158 579 aa25.54■■□□□ 1.68
VPS36-204ENST00000480923 HSPA6P17066 643 aa25.53■■□□□ 1.68
VPS36-204ENST00000480923 FSTL1Q12841 308 aa25.53■■□□□ 1.68
VPS36-204ENST00000480923 SMC1BQ8NDV3 1235 aa25.53■■□□□ 1.68
VPS36-204ENST00000480923 C9orf78Q9NZ63 289 aaPredicted RBP25.53■■□□□ 1.68
VPS36-204ENST00000480923 ANKIB1Q9P2G1 1089 aa25.53■■□□□ 1.68
VPS36-204ENST00000480923 GRM8O00222 908 aa25.52■■□□□ 1.68
VPS36-204ENST00000480923 WASHC4Q2M389 1173 aa25.52■■□□□ 1.68
VPS36-204ENST00000480923 POLLQ9UGP5 575 aa25.52■■□□□ 1.68
VPS36-204ENST00000480923 ZNRF3Q9ULT6 936 aa25.52■■□□□ 1.68
VPS36-204ENST00000480923 RTL9Q8NET4 1388 aa25.52■■□□□ 1.68
VPS36-204ENST00000480923 DUOX1Q9NRD9 1551 aa25.52■■□□□ 1.68
VPS36-204ENST00000480923 RIMBP2O15034 1052 aa25.51■■□□□ 1.67
VPS36-204ENST00000480923 FAM161AQ3B820 660 aa25.51■■□□□ 1.67
VPS36-204ENST00000480923 TBC1D16Q8TBP0 767 aa25.51■■□□□ 1.67
VPS36-204ENST00000480923 EYA3Q99504 573 aa25.51■■□□□ 1.67
VPS36-204ENST00000480923 ITGA6P23229 1130 aa25.5■■□□□ 1.67
VPS36-204ENST00000480923 PODXL2Q9NZ53 605 aa25.5■■□□□ 1.67
VPS36-204ENST00000480923 HACL1Q9UJ83 578 aa25.5■■□□□ 1.67
VPS36-204ENST00000480923 GGA1Q9UJY5 639 aa25.5■■□□□ 1.67
VPS36-204ENST00000480923 UFL1O94874 794 aa25.49■■□□□ 1.67
VPS36-204ENST00000480923 CSF1RP07333 972 aa25.49■■□□□ 1.67
VPS36-204ENST00000480923 IGHMBP2P38935 993 aaKnown RBP25.49■■□□□ 1.67
VPS36-204ENST00000480923 TAF1DQ9H5J8 278 aaPredicted RBP25.49■■□□□ 1.67
VPS36-204ENST00000480923 BSDC1Q9NW68 430 aaPredicted RBP25.49■■□□□ 1.67
VPS36-204ENST00000480923 CXCL9Q07325 125 aa25.48■■□□□ 1.67
VPS36-204ENST00000480923 GPR101Q96P66 508 aaPredicted RBP25.48■■□□□ 1.67
VPS36-204ENST00000480923 CHMP3Q9Y3E7 222 aa25.48■■□□□ 1.67
VPS36-204ENST00000480923 XDHP47989 1333 aa25.47■■□□□ 1.67
VPS36-204ENST00000480923 LMOD1P29536 600 aaPredicted RBP25.47■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms