RNA–Protein interactions for RNA: ENST00000479602.5

DDX56-211, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 440 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-211ENST00000479602 JDP2Q8WYK2 163 aa11.42□□□□□ -0.58
DDX56-211ENST00000479602 HYPKQ9NX55 129 aa11.42□□□□□ -0.58
DDX56-211ENST00000479602 WBP1LQ9NX94 342 aa11.42□□□□□ -0.58
DDX56-211ENST00000479602 MKRN1Q9UHC7 482 aaKnown RBP11.42□□□□□ -0.58
DDX56-211ENST00000479602 PGAP2Q9UHJ9 254 aa11.42□□□□□ -0.58
DDX56-211ENST00000479602 PPEF1O14829 653 aaPredicted RBP11.41□□□□□ -0.58
DDX56-211ENST00000479602 EIF2S2P20042 333 aaKnown RBP11.41□□□□□ -0.58
DDX56-211ENST00000479602 EXOSC9Q06265 439 aaKnown RBP11.41□□□□□ -0.58
DDX56-211ENST00000479602 TRIM28Q13263 835 aaKnown RBP11.41□□□□□ -0.58
DDX56-211ENST00000479602 KRT24Q2M2I5 525 aa11.41□□□□□ -0.58
DDX56-211ENST00000479602 MAP1SQ66K74 1059 aaPredicted RBP11.41□□□□□ -0.58
DDX56-211ENST00000479602 XAGE3Q8WTP9 111 aa11.41□□□□□ -0.58
DDX56-211ENST00000479602 RPGRQ92834 1020 aaKnown RBP11.41□□□□□ -0.58
DDX56-211ENST00000479602 ABCC4O15439 1325 aa11.4□□□□□ -0.58
DDX56-211ENST00000479602 FOXN1O15353 648 aa11.4□□□□□ -0.58
DDX56-211ENST00000479602 CST9Q5W186 159 aa11.4□□□□□ -0.58
DDX56-211ENST00000479602 TNS4Q8IZW8 715 aa11.4□□□□□ -0.58
DDX56-211ENST00000479602 TSPYL6Q8N831 410 aa11.4□□□□□ -0.58
DDX56-211ENST00000479602 CDCA7LQ96GN5 454 aa11.4□□□□□ -0.58
DDX56-211ENST00000479602 ISCA1Q9BUE6 129 aa11.4□□□□□ -0.58
DDX56-211ENST00000479602 PRDM10Q9NQV6 1147 aa11.4□□□□□ -0.58
DDX56-211ENST00000479602 PTPRCP08575 1304 aa11.39□□□□□ -0.59
DDX56-211ENST00000479602 EIF6P56537 245 aaKnown RBP11.39□□□□□ -0.59
DDX56-211ENST00000479602 CXCL9Q07325 125 aa11.39□□□□□ -0.59
DDX56-211ENST00000479602 SF3B3Q15393 1217 aaKnown RBP11.39□□□□□ -0.59
DDX56-211ENST00000479602 EAPPQ56P03 285 aaPredicted RBP11.39□□□□□ -0.59
DDX56-211ENST00000479602 HSP90AB3PQ58FF7 597 aa11.39□□□□□ -0.59
DDX56-211ENST00000479602 USP50Q70EL3 339 aaPredicted RBP11.39□□□□□ -0.59
DDX56-211ENST00000479602 LARGE2Q8N3Y3 721 aa11.39□□□□□ -0.59
DDX56-211ENST00000479602 ARHGAP45Q92619 1136 aa11.39□□□□□ -0.59
DDX56-211ENST00000479602 ZNRF3Q9ULT6 936 aa11.39□□□□□ -0.59
DDX56-211ENST00000479602 LAS1LQ9Y4W2 734 aaKnown RBP11.39□□□□□ -0.59
DDX56-211ENST00000479602 KIF16BQ96L93 1317 aa11.38□□□□□ -0.59
DDX56-211ENST00000479602 LTBP1Q14766 1721 aa11.38□□□□□ -0.59
DDX56-211ENST00000479602 HCLS1P14317 486 aaPredicted RBP11.38□□□□□ -0.59
DDX56-211ENST00000479602 FMR1Q06787 632 aaKnown RBP eCLIP11.38□□□□□ -0.59
DDX56-211ENST00000479602 KIAA2012Q0VF49 1180 aa11.38□□□□□ -0.59
DDX56-211ENST00000479602 DEFB115Q30KQ5 88 aa11.38□□□□□ -0.59
DDX56-211ENST00000479602 PLBD2Q8NHP8 589 aa11.38□□□□□ -0.59
DDX56-211ENST00000479602 STK31Q9BXU1 1019 aa11.38□□□□□ -0.59
DDX56-211ENST00000479602 GPRC5DQ9NZD1 345 aa11.38□□□□□ -0.59
DDX56-211ENST00000479602 HIRAP54198 1017 aaPredicted RBP11.37□□□□□ -0.59
DDX56-211ENST00000479602 GRAPQ13588 217 aa11.37□□□□□ -0.59
DDX56-211ENST00000479602 AOC3Q16853 763 aa11.37□□□□□ -0.59
DDX56-211ENST00000479602 ANKRD13DQ6ZTN6 518 aa11.37□□□□□ -0.59
DDX56-211ENST00000479602 GRAPLQ8TC17 118 aaPredicted RBP11.37□□□□□ -0.59
DDX56-211ENST00000479602 CHPF2Q9P2E5 772 aa11.37□□□□□ -0.59
DDX56-211ENST00000479602 CLEC11AQ9Y240 323 aa11.37□□□□□ -0.59
DDX56-211ENST00000479602 SALL2Q9Y467 1007 aaPredicted RBP11.37□□□□□ -0.59
DDX56-211ENST00000479602 SH3TC1Q8TE82 1336 aa11.36□□□□□ -0.59
DDX56-211ENST00000479602 YDJCA8MPS7 323 aa11.36□□□□□ -0.59
DDX56-211ENST00000479602 TCERG1O14776 1098 aaKnown RBP11.36□□□□□ -0.59
DDX56-211ENST00000479602 PPIP5K2O43314 1243 aa11.36□□□□□ -0.59
DDX56-211ENST00000479602 RARSP54136 660 aaKnown RBP11.36□□□□□ -0.59
DDX56-211ENST00000479602 AIMP1Q12904 312 aaKnown RBP11.36□□□□□ -0.59
DDX56-211ENST00000479602 MPNDQ8N594 471 aa11.36□□□□□ -0.59
DDX56-211ENST00000479602 SUPT20HQ8NEM7 779 aa11.36□□□□□ -0.59
DDX56-211ENST00000479602 TRMT112Q9UI30 125 aaKnown RBP11.36□□□□□ -0.59
DDX56-211ENST00000479602 GJA3Q9Y6H8 435 aa11.36□□□□□ -0.59
DDX56-211ENST00000479602 WDR33Q9C0J8 1336 aaKnown RBP11.35□□□□□ -0.59
DDX56-211ENST00000479602 DDX58O95786 925 aaKnown RBP11.35□□□□□ -0.59
DDX56-211ENST00000479602 TMC4Q7Z404 712 aa11.35□□□□□ -0.59
DDX56-211ENST00000479602 NIM1KQ8IY84 436 aa11.35□□□□□ -0.59
DDX56-211ENST00000479602 ZC3H15Q8WU90 426 aaKnown RBP11.35□□□□□ -0.59
DDX56-211ENST00000479602 NECTIN2Q92692 538 aa11.35□□□□□ -0.59
DDX56-211ENST00000479602 ADARB2Q9NS39 739 aaKnown RBP11.35□□□□□ -0.59
DDX56-211ENST00000479602 LAMB2P55268 1798 aa11.35□□□□□ -0.59
DDX56-211ENST00000479602 CDHR2Q9BYE9 1310 aa11.35□□□□□ -0.59
DDX56-211ENST00000479602 TRAF5O00463 557 aa11.34□□□□□ -0.59
DDX56-211ENST00000479602 LMOD1P29536 600 aaPredicted RBP11.34□□□□□ -0.59
DDX56-211ENST00000479602 CTCFP49711 727 aaPredicted RBP11.34□□□□□ -0.59
DDX56-211ENST00000479602 GMPSP49915 693 aaPredicted RBP11.34□□□□□ -0.59
DDX56-211ENST00000479602 FLIIQ13045 1269 aa11.34□□□□□ -0.59
DDX56-211ENST00000479602 DPP8Q6V1X1 898 aaPredicted RBP11.34□□□□□ -0.59
DDX56-211ENST00000479602 DDX46Q7L014 1031 aaKnown RBP11.34□□□□□ -0.59
DDX56-211ENST00000479602 MRPL50Q8N5N7 158 aaKnown RBP11.34□□□□□ -0.59
DDX56-211ENST00000479602 CELF1Q92879 486 aaKnown RBP11.34□□□□□ -0.59
DDX56-211ENST00000479602 FAM89AQ96GI7 184 aa11.34□□□□□ -0.59
DDX56-211ENST00000479602 TLL2Q9Y6L7 1015 aa11.34□□□□□ -0.59
DDX56-211ENST00000479602 MAP2K1Q02750 393 aaPredicted RBP11.33□□□□□ -0.6
DDX56-211ENST00000479602 CIAPIN1Q6FI81 312 aa11.33□□□□□ -0.6
DDX56-211ENST00000479602 KSR2Q6VAB6 950 aa11.33□□□□□ -0.6
DDX56-211ENST00000479602 SAPCD2Q86UD0 394 aa11.33□□□□□ -0.6
DDX56-211ENST00000479602 SSH1Q8WYL5 1049 aa11.33□□□□□ -0.6
DDX56-211ENST00000479602 DPF2Q92785 391 aa11.33□□□□□ -0.6
DDX56-211ENST00000479602 HHIPL1Q96JK4 782 aa11.33□□□□□ -0.6
DDX56-211ENST00000479602 POLLQ9UGP5 575 aa11.33□□□□□ -0.6
DDX56-211ENST00000479602 SLC4A2P04920 1241 aa11.32□□□□□ -0.6
DDX56-211ENST00000479602 HSPA8P11142 646 aaKnown RBP11.32□□□□□ -0.6
DDX56-211ENST00000479602 TNIP1Q15025 636 aa11.32□□□□□ -0.6
DDX56-211ENST00000479602 PODXL2Q9NZ53 605 aa11.32□□□□□ -0.6
DDX56-211ENST00000479602 DUOX1Q9NRD9 1551 aa11.32□□□□□ -0.6
DDX56-211ENST00000479602 SHTN1A0MZ66 631 aa11.31□□□□□ -0.6
DDX56-211ENST00000479602 ATP5J2-PTCD1G3V325 749 aa11.31□□□□□ -0.6
DDX56-211ENST00000479602 ELL2O00472 640 aaPredicted RBP11.31□□□□□ -0.6
DDX56-211ENST00000479602 RAD17O75943 681 aa11.31□□□□□ -0.6
DDX56-211ENST00000479602 MAP2K2P36507 400 aa11.31□□□□□ -0.6
DDX56-211ENST00000479602 LBX1P52954 281 aa11.31□□□□□ -0.6
DDX56-211ENST00000479602 RPS8P62241 208 aaKnown RBP11.31□□□□□ -0.6
DDX56-211ENST00000479602 ZBTB38Q8NAP3 1195 aaPredicted RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms