RNA–Protein interactions for RNA: ENST00000479107.1

HLA-DPA1-247, Transcript of major histocompatibility complex, class II, DP alpha 1, humanhuman

Gene HLA-DPA1, Length 5,025 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1-247ENST00000479107 RIC3Q7Z5B4 369 aa10.03□□□□□ -0.8
HLA-DPA1-247ENST00000479107 OVOS2A0A0G2JMS6 1433 aa10.03□□□□□ -0.8
HLA-DPA1-247ENST00000479107 OVOS2A0A0J9YW53 1432 aa10.03□□□□□ -0.8
HLA-DPA1-247ENST00000479107 OVOS2Q6IE36 1432 aa10.03□□□□□ -0.8
HLA-DPA1-247ENST00000479107 IL16Q14005 1332 aa10.03□□□□□ -0.8
HLA-DPA1-247ENST00000479107 SPATA31A1Q5TZJ5 1347 aa10.03□□□□□ -0.8
HLA-DPA1-247ENST00000479107 IVLP07476 585 aa10.03□□□□□ -0.8
HLA-DPA1-247ENST00000479107 TOP1P11387 765 aaKnown RBP10.03□□□□□ -0.8
HLA-DPA1-247ENST00000479107 GTF2A1P52655 376 aaPredicted RBP10.03□□□□□ -0.8
HLA-DPA1-247ENST00000479107 FAM193AP78312 1265 aa10.03□□□□□ -0.8
HLA-DPA1-247ENST00000479107 GABPB1Q06547 395 aaPredicted RBP10.03□□□□□ -0.8
HLA-DPA1-247ENST00000479107 DALRD3Q5D0E6 543 aaKnown RBP10.03□□□□□ -0.8
HLA-DPA1-247ENST00000479107 CCDC150Q8NCX0 1101 aa10.03□□□□□ -0.8
HLA-DPA1-247ENST00000479107 CCDC148Q8NFR7 591 aa10.03□□□□□ -0.8
HLA-DPA1-247ENST00000479107 DDX11Q96FC9 970 aa10.03□□□□□ -0.8
HLA-DPA1-247ENST00000479107 RBSNQ9H1K0 784 aa10.03□□□□□ -0.8
HLA-DPA1-247ENST00000479107 RAB11FIP3O75154 756 aa10.02□□□□□ -0.8
HLA-DPA1-247ENST00000479107 SLU7O95391 586 aaKnown RBP10.02□□□□□ -0.8
HLA-DPA1-247ENST00000479107 ZSCAN22P10073 491 aaPredicted RBP10.02□□□□□ -0.8
HLA-DPA1-247ENST00000479107 IRX3P78415 501 aaPredicted RBP10.02□□□□□ -0.8
HLA-DPA1-247ENST00000479107 CTR9Q6PD62 1173 aa10.02□□□□□ -0.8
HLA-DPA1-247ENST00000479107 WDR17Q8IZU2 1322 aa10.02□□□□□ -0.8
HLA-DPA1-247ENST00000479107 GLRX3O76003 335 aaKnown RBP10.02□□□□□ -0.81
HLA-DPA1-247ENST00000479107 SOGA3Q5TF21 947 aa10.02□□□□□ -0.81
HLA-DPA1-247ENST00000479107 USP48Q86UV5 1035 aa10.02□□□□□ -0.81
HLA-DPA1-247ENST00000479107 USHBP1Q8N6Y0 703 aa10.02□□□□□ -0.81
HLA-DPA1-247ENST00000479107 SRGAP3O43295 1099 aa10.02□□□□□ -0.81
HLA-DPA1-247ENST00000479107 NF2P35240 595 aa10.02□□□□□ -0.81
HLA-DPA1-247ENST00000479107 ANAPC15P60006 121 aa10.02□□□□□ -0.81
HLA-DPA1-247ENST00000479107 KIF1BPQ96EK5 621 aa10.02□□□□□ -0.81
HLA-DPA1-247ENST00000479107 KAT6BQ8WYB5 2073 aa10.02□□□□□ -0.81
HLA-DPA1-247ENST00000479107 KIDINS220Q9ULH0 1771 aa10.02□□□□□ -0.81
HLA-DPA1-247ENST00000479107 RRS1Q15050 365 aaKnown RBP10.01□□□□□ -0.81
HLA-DPA1-247ENST00000479107 KIF4BQ2VIQ3 1234 aa10.01□□□□□ -0.81
HLA-DPA1-247ENST00000479107 HDGFL1Q5TGJ6 251 aa10.01□□□□□ -0.81
HLA-DPA1-247ENST00000479107 ABT1Q9ULW3 272 aaKnown RBP10.01□□□□□ -0.81
HLA-DPA1-247ENST00000479107 PRPF40BQ6NWY9 871 aaKnown RBP10.01□□□□□ -0.81
HLA-DPA1-247ENST00000479107 PPP1R9BQ96SB3 815 aa10.01□□□□□ -0.81
HLA-DPA1-247ENST00000479107 FHDC1Q9C0D6 1143 aaPredicted RBP10.01□□□□□ -0.81
HLA-DPA1-247ENST00000479107 CENPHQ9H3R5 247 aa10.01□□□□□ -0.81
HLA-DPA1-247ENST00000479107 LUC7LQ9NQ29 371 aaKnown RBP10.01□□□□□ -0.81
HLA-DPA1-247ENST00000479107 SKILP12757 684 aa10.01□□□□□ -0.81
HLA-DPA1-247ENST00000479107 SART3Q15020 963 aaKnown RBP10.01□□□□□ -0.81
HLA-DPA1-247ENST00000479107 GPATCH11Q8N954 259 aa10.01□□□□□ -0.81
HLA-DPA1-247ENST00000479107 PIBF1Q8WXW3 757 aa10.01□□□□□ -0.81
HLA-DPA1-247ENST00000479107 ARHGAP45Q92619 1136 aa10.01□□□□□ -0.81
HLA-DPA1-247ENST00000479107 ZNF500O60304 480 aaPredicted RBP10.01□□□□□ -0.81
HLA-DPA1-247ENST00000479107 IGSF3O75054 1194 aa10.01□□□□□ -0.81
HLA-DPA1-247ENST00000479107 GJB2P29033 226 aa10.01□□□□□ -0.81
HLA-DPA1-247ENST00000479107 SULT6B1Q6IMI4 303 aa10.01□□□□□ -0.81
HLA-DPA1-247ENST00000479107 SETDB2Q96T68 719 aa10.01□□□□□ -0.81
HLA-DPA1-247ENST00000479107 SRRTQ9BXP5 876 aaKnown RBP10.01□□□□□ -0.81
HLA-DPA1-247ENST00000479107 ATP2B1P20020 1258 aa10□□□□□ -0.81
HLA-DPA1-247ENST00000479107 TXLNAP40222 546 aa10□□□□□ -0.81
HLA-DPA1-247ENST00000479107 ARFGAP3Q9NP61 516 aa10□□□□□ -0.81
HLA-DPA1-247ENST00000479107 KDM4AO75164 1064 aa10□□□□□ -0.81
HLA-DPA1-247ENST00000479107 ERLIN2O94905 339 aa10□□□□□ -0.81
HLA-DPA1-247ENST00000479107 TMC6Q7Z403 805 aa10□□□□□ -0.81
HLA-DPA1-247ENST00000479107 PLEKHG3A1L390 1219 aa10□□□□□ -0.81
HLA-DPA1-247ENST00000479107 MICALCLQ6ZW33 695 aa10□□□□□ -0.81
HLA-DPA1-247ENST00000479107 NUTM1Q86Y26 1132 aa10□□□□□ -0.81
HLA-DPA1-247ENST00000479107 AACSQ86V21 672 aa10□□□□□ -0.81
HLA-DPA1-247ENST00000479107 PIM2Q9P1W9 311 aa10□□□□□ -0.81
HLA-DPA1-247ENST00000479107 ANKARQ7Z5J8 1434 aa10□□□□□ -0.81
HLA-DPA1-247ENST00000479107 INO80Q9ULG1 1556 aaPredicted RBP9.99□□□□□ -0.81
HLA-DPA1-247ENST00000479107 FSD2A1L4K1 749 aa9.99□□□□□ -0.81
HLA-DPA1-247ENST00000479107 CDKL5O76039 1030 aa9.99□□□□□ -0.81
HLA-DPA1-247ENST00000479107 RNF181Q9P0P0 153 aa9.99□□□□□ -0.81
HLA-DPA1-247ENST00000479107 INSRP06213 1382 aa9.99□□□□□ -0.81
HLA-DPA1-247ENST00000479107 SDSP20132 328 aa9.99□□□□□ -0.81
HLA-DPA1-247ENST00000479107 AIMP1Q12904 312 aaKnown RBP9.99□□□□□ -0.81
HLA-DPA1-247ENST00000479107 NBPF6Q5VWK0 638 aa9.99□□□□□ -0.81
HLA-DPA1-247ENST00000479107 NBPF5PQ86XG9 351 aaPredicted RBP9.99□□□□□ -0.81
HLA-DPA1-247ENST00000479107 CCAR1Q8IX12 1150 aaKnown RBP9.99□□□□□ -0.81
HLA-DPA1-247ENST00000479107 NBPF4Q96M43 638 aa9.99□□□□□ -0.81
HLA-DPA1-247ENST00000479107 CNPY2Q9Y2B0 182 aa9.99□□□□□ -0.81
HLA-DPA1-247ENST00000479107 LRRFIP2Q9Y608 721 aaKnown RBP9.99□□□□□ -0.81
HLA-DPA1-247ENST00000479107 MST1RQ04912 1400 aa9.99□□□□□ -0.81
HLA-DPA1-247ENST00000479107 STIM1Q13586 685 aa9.99□□□□□ -0.81
HLA-DPA1-247ENST00000479107 IP6K1Q92551 441 aa9.99□□□□□ -0.81
HLA-DPA1-247ENST00000479107 INTS4Q96HW7 963 aaKnown RBP9.99□□□□□ -0.81
HLA-DPA1-247ENST00000479107 DNAAF4Q8WXU2 420 aa9.98□□□□□ -0.81
HLA-DPA1-247ENST00000479107 GJA3Q9Y6H8 435 aa9.98□□□□□ -0.81
HLA-DPA1-247ENST00000479107 ADGRL2O95490 1459 aa9.98□□□□□ -0.81
HLA-DPA1-247ENST00000479107 MROH2AA6NES4 1674 aa9.98□□□□□ -0.81
HLA-DPA1-247ENST00000479107 POLR3AO14802 1390 aaPredicted RBP9.98□□□□□ -0.81
HLA-DPA1-247ENST00000479107 ANO6Q4KMQ2 910 aa9.98□□□□□ -0.81
HLA-DPA1-247ENST00000479107 TFIP11Q9UBB9 837 aaKnown RBP9.98□□□□□ -0.81
HLA-DPA1-247ENST00000479107 TRIM22Q8IYM9 498 aa9.98□□□□□ -0.81
HLA-DPA1-247ENST00000479107 SYNMO15061 1565 aa9.98□□□□□ -0.81
HLA-DPA1-247ENST00000479107 RLBP1P12271 317 aa9.98□□□□□ -0.81
HLA-DPA1-247ENST00000479107 ODF2Q5BJF6 829 aa9.98□□□□□ -0.81
HLA-DPA1-247ENST00000479107 FSIP1Q8NA03 581 aa9.98□□□□□ -0.81
HLA-DPA1-247ENST00000479107 THUMPD2Q9BTF0 503 aaKnown RBP9.98□□□□□ -0.81
HLA-DPA1-247ENST00000479107 RASSF4Q9H2L5 321 aa9.98□□□□□ -0.81
HLA-DPA1-247ENST00000479107 ZNF408Q9H9D4 720 aa9.98□□□□□ -0.81
HLA-DPA1-247ENST00000479107 RGS17Q9UGC6 210 aaPredicted RBP9.98□□□□□ -0.81
HLA-DPA1-247ENST00000479107 ZC3H13Q5T200 1668 aaKnown RBP9.98□□□□□ -0.81
HLA-DPA1-247ENST00000479107 SLIT1O75093 1534 aa9.97□□□□□ -0.81
HLA-DPA1-247ENST00000479107 EPS15P42566 896 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms