RNA–Protein interactions for RNA: ENST00000479080.1

CHD3-210, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 519 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-210ENST00000479080 C10orf71Q711Q0 1435 aa16.38■□□□□ 0.21
CHD3-210ENST00000479080 KLHDC4Q8TBB5 520 aa16.38■□□□□ 0.21
CHD3-210ENST00000479080 GREM2Q9H772 168 aa16.38■□□□□ 0.21
CHD3-210ENST00000479080 PA2G4Q9UQ80 394 aaKnown RBP16.38■□□□□ 0.21
CHD3-210ENST00000479080 COL11A2P13942 1736 aaPredicted RBP16.38■□□□□ 0.21
CHD3-210ENST00000479080 SRGAP3O43295 1099 aa16.37■□□□□ 0.21
CHD3-210ENST00000479080 PTPN12Q05209 780 aaKnown RBP16.37■□□□□ 0.21
CHD3-210ENST00000479080 SF3B3Q15393 1217 aaKnown RBP16.37■□□□□ 0.21
CHD3-210ENST00000479080 SLC51AQ86UW1 340 aa16.37■□□□□ 0.21
CHD3-210ENST00000479080 MTFR1LQ9H019 292 aa16.37■□□□□ 0.21
CHD3-210ENST00000479080 ATF5Q9Y2D1 282 aaPredicted RBP16.37■□□□□ 0.21
CHD3-210ENST00000479080 MYH3P11055 1940 aa16.37■□□□□ 0.21
CHD3-210ENST00000479080 RTL9Q8NET4 1388 aa16.37■□□□□ 0.21
CHD3-210ENST00000479080 SRCAPQ6ZRS2 3230 aa16.36■□□□□ 0.21
CHD3-210ENST00000479080 KLRG2A4D1S0 409 aaPredicted RBP16.36■□□□□ 0.21
CHD3-210ENST00000479080 PTGER2P43116 358 aa16.36■□□□□ 0.21
CHD3-210ENST00000479080 CCDC136Q96JN2 1154 aa16.36■□□□□ 0.21
CHD3-210ENST00000479080 SEC31BQ9NQW1 1179 aa16.36■□□□□ 0.21
CHD3-210ENST00000479080 PARP3Q9Y6F1 533 aa16.36■□□□□ 0.21
CHD3-210ENST00000479080 KIAA1551Q9HCM1 1747 aa16.36■□□□□ 0.21
CHD3-210ENST00000479080 CRY2Q49AN0 593 aa16.35■□□□□ 0.21
CHD3-210ENST00000479080 SMC5Q8IY18 1101 aa16.35■□□□□ 0.21
CHD3-210ENST00000479080 ZNF594Q96JF6 807 aaPredicted RBP16.35■□□□□ 0.21
CHD3-210ENST00000479080 DCTPP1Q9H773 170 aa16.35■□□□□ 0.21
CHD3-210ENST00000479080 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.35■□□□□ 0.21
CHD3-210ENST00000479080 SKAP1Q86WV1 359 aa16.34■□□□□ 0.21
CHD3-210ENST00000479080 HDAC5Q9UQL6 1122 aa16.34■□□□□ 0.21
CHD3-210ENST00000479080 NOP58Q9Y2X3 529 aaKnown RBP16.34■□□□□ 0.21
CHD3-210ENST00000479080 ITGA6P23229 1130 aa16.33■□□□□ 0.2
CHD3-210ENST00000479080 GTF2E1P29083 439 aaPredicted RBP16.33■□□□□ 0.2
CHD3-210ENST00000479080 ST5P78524 1137 aa16.33■□□□□ 0.2
CHD3-210ENST00000479080 PUS3Q9BZE2 481 aaKnown RBP16.33■□□□□ 0.2
CHD3-210ENST00000479080 RWDD1Q9H446 243 aaPredicted RBP16.33■□□□□ 0.2
CHD3-210ENST00000479080 COPRSQ9NQ92 184 aa16.33■□□□□ 0.2
CHD3-210ENST00000479080 EXOC6BQ9Y2D4 811 aa16.33■□□□□ 0.2
CHD3-210ENST00000479080 ATG9AQ7Z3C6 839 aa16.32■□□□□ 0.2
CHD3-210ENST00000479080 NLRP3Q96P20 1036 aa16.32■□□□□ 0.2
CHD3-210ENST00000479080 BRIP1Q9BX63 1249 aa16.32■□□□□ 0.2
CHD3-210ENST00000479080 KIF13BQ9NQT8 1826 aa16.32■□□□□ 0.2
CHD3-210ENST00000479080 CHMP3Q9Y3E7 222 aa16.32■□□□□ 0.2
CHD3-210ENST00000479080 TAF1P21675 1872 aa16.31■□□□□ 0.2
CHD3-210ENST00000479080 HMMRO75330 724 aa16.31■□□□□ 0.2
CHD3-210ENST00000479080 CCDC152Q4G0S7 254 aa16.31■□□□□ 0.2
CHD3-210ENST00000479080 LRRC24Q50LG9 513 aa16.31■□□□□ 0.2
CHD3-210ENST00000479080 CENPQQ7L2Z9 268 aaPredicted RBP16.31■□□□□ 0.2
CHD3-210ENST00000479080 CELF1Q92879 486 aaKnown RBP16.31■□□□□ 0.2
CHD3-210ENST00000479080 SASH1O94885 1247 aa16.3■□□□□ 0.2
CHD3-210ENST00000479080 SIL1Q9H173 461 aa16.3■□□□□ 0.2
CHD3-210ENST00000479080 NPHP1O15259 732 aa16.29■□□□□ 0.2
CHD3-210ENST00000479080 SMARCA5O60264 1052 aaPredicted RBP16.29■□□□□ 0.2
CHD3-210ENST00000479080 SURF6O75683 361 aaKnown RBP16.29■□□□□ 0.2
CHD3-210ENST00000479080 HSP90B1P14625 803 aaKnown RBP16.29■□□□□ 0.2
CHD3-210ENST00000479080 IFIT5Q13325 482 aaKnown RBP16.29■□□□□ 0.2
CHD3-210ENST00000479080 PDZRN3Q9UPQ7 1066 aa16.29■□□□□ 0.2
CHD3-210ENST00000479080 SPEF2Q9C093 1822 aa16.29■□□□□ 0.2
CHD3-210ENST00000479080 ANKRD18BA2A2Z9 1011 aa16.28■□□□□ 0.2
CHD3-210ENST00000479080 EYA2O00167 538 aa16.28■□□□□ 0.2
CHD3-210ENST00000479080 SRGNP10124 158 aa16.28■□□□□ 0.2
CHD3-210ENST00000479080 PDE4AP27815 886 aa16.28■□□□□ 0.2
CHD3-210ENST00000479080 CHRNA5P30532 468 aa16.28■□□□□ 0.2
CHD3-210ENST00000479080 HOXA10P31260 410 aaPredicted RBP16.28■□□□□ 0.2
CHD3-210ENST00000479080 CCDC57Q2TAC2 916 aa16.28■□□□□ 0.2
CHD3-210ENST00000479080 GCC1Q96CN9 775 aa16.28■□□□□ 0.2
CHD3-210ENST00000479080 RIPOR2Q9Y4F9 1068 aa16.28■□□□□ 0.2
CHD3-210ENST00000479080 A0A1B0GUL6 1792 aa16.28■□□□□ 0.2
CHD3-210ENST00000479080 NUCB1Q02818 461 aa16.27■□□□□ 0.2
CHD3-210ENST00000479080 DLEC1Q9Y238 1755 aa16.27■□□□□ 0.2
CHD3-210ENST00000479080 LRRC37AA6NMS7 1700 aa16.27■□□□□ 0.19
CHD3-210ENST00000479080 APBB1O00213 710 aa16.26■□□□□ 0.19
CHD3-210ENST00000479080 CIAO1O76071 339 aa16.26■□□□□ 0.19
CHD3-210ENST00000479080 KCNA3P22001 575 aa16.26■□□□□ 0.19
CHD3-210ENST00000479080 GRAPQ13588 217 aa16.26■□□□□ 0.19
CHD3-210ENST00000479080 VGLL2Q8N8G2 317 aa16.26■□□□□ 0.19
CHD3-210ENST00000479080 GRAPLQ8TC17 118 aaPredicted RBP16.26■□□□□ 0.19
CHD3-210ENST00000479080 RHPN1Q8TCX5 695 aa16.26■□□□□ 0.19
CHD3-210ENST00000479080 POLD1P28340 1107 aa16.25■□□□□ 0.19
CHD3-210ENST00000479080 C2CD5Q86YS7 1000 aa16.25■□□□□ 0.19
CHD3-210ENST00000479080 OTUD7AQ8TE49 926 aaPredicted RBP16.25■□□□□ 0.19
CHD3-210ENST00000479080 CRAMP1Q96RY5 1269 aa16.25■□□□□ 0.19
CHD3-210ENST00000479080 SALL3Q9BXA9 1300 aa16.24■□□□□ 0.19
CHD3-210ENST00000479080 PDE6BP35913 854 aa16.24■□□□□ 0.19
CHD3-210ENST00000479080 TFCP2Q12800 502 aa16.24■□□□□ 0.19
CHD3-210ENST00000479080 DDX46Q7L014 1031 aaKnown RBP16.24■□□□□ 0.19
CHD3-210ENST00000479080 C16orf71Q8IYS4 520 aaPredicted RBP16.24■□□□□ 0.19
CHD3-210ENST00000479080 CDC5LQ99459 802 aaKnown RBP16.24■□□□□ 0.19
CHD3-210ENST00000479080 IL1RAPL2Q9NP60 686 aa16.24■□□□□ 0.19
CHD3-210ENST00000479080 ZNF609O15014 1411 aa16.24■□□□□ 0.19
CHD3-210ENST00000479080 LTBP1Q14766 1721 aa16.23■□□□□ 0.19
CHD3-210ENST00000479080 SNED1Q8TER0 1413 aa16.23■□□□□ 0.19
CHD3-210ENST00000479080 WTIPA6NIX2 430 aaPredicted RBP16.23■□□□□ 0.19
CHD3-210ENST00000479080 RAB11FIP3O75154 756 aa16.23■□□□□ 0.19
CHD3-210ENST00000479080 NPR1P16066 1061 aa16.23■□□□□ 0.19
CHD3-210ENST00000479080 DPEP1P16444 411 aa16.23■□□□□ 0.19
CHD3-210ENST00000479080 IL15P40933 162 aaPredicted RBP16.23■□□□□ 0.19
CHD3-210ENST00000479080 RPS8P62241 208 aaKnown RBP16.23■□□□□ 0.19
CHD3-210ENST00000479080 ANKRD45Q5TZF3 282 aa16.23■□□□□ 0.19
CHD3-210ENST00000479080 LDHAL6AQ6ZMR3 332 aa16.23■□□□□ 0.19
CHD3-210ENST00000479080 CHD1LQ86WJ1 897 aa16.23■□□□□ 0.19
CHD3-210ENST00000479080 ANKRD18AQ8IVF6 992 aa16.23■□□□□ 0.19
CHD3-210ENST00000479080 RPGRQ92834 1020 aaKnown RBP16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 125.3 ms