RNA–Protein interactions for RNA: ENST00000478423.6

NPHP4-208, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,467 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-208ENST00000478423 NLRP5P59047 1200 aa16.52■□□□□ 0.24
NPHP4-208ENST00000478423 RBM27Q9P2N5 1060 aaKnown RBP16.52■□□□□ 0.24
NPHP4-208ENST00000478423 PNMA6EA0A0J9YXQ4 647 aa16.52■□□□□ 0.24
NPHP4-208ENST00000478423 TIMM10P62072 90 aa16.52■□□□□ 0.24
NPHP4-208ENST00000478423 PDE4BQ07343 736 aa16.52■□□□□ 0.24
NPHP4-208ENST00000478423 CCDC194A0A1B0GVG4 234 aa16.52■□□□□ 0.23
NPHP4-208ENST00000478423 IL17REQ8NFR9 667 aa16.52■□□□□ 0.23
NPHP4-208ENST00000478423 SLC52A2Q9HAB3 445 aa16.52■□□□□ 0.23
NPHP4-208ENST00000478423 UBE2HP62256 183 aa16.51■□□□□ 0.23
NPHP4-208ENST00000478423 METTL22Q9BUU2 404 aaPredicted RBP16.51■□□□□ 0.23
NPHP4-208ENST00000478423 SLC26A6Q9BXS9 759 aa16.51■□□□□ 0.23
NPHP4-208ENST00000478423 USP26Q9BXU7 913 aa16.51■□□□□ 0.23
NPHP4-208ENST00000478423 CCDC96Q2M329 555 aa16.51■□□□□ 0.23
NPHP4-208ENST00000478423 SPTY2D1Q68D10 685 aaPredicted RBP16.51■□□□□ 0.23
NPHP4-208ENST00000478423 STX8Q9UNK0 236 aa16.51■□□□□ 0.23
NPHP4-208ENST00000478423 PLA2R1Q13018 1463 aa16.51■□□□□ 0.23
NPHP4-208ENST00000478423 PLBD2Q8NHP8 589 aa16.51■□□□□ 0.23
NPHP4-208ENST00000478423 EIF4A1P60842 406 aaKnown RBP16.51■□□□□ 0.23
NPHP4-208ENST00000478423 ZFYVE27Q5T4F4 411 aa16.51■□□□□ 0.23
NPHP4-208ENST00000478423 SLAIN2Q9P270 581 aa16.51■□□□□ 0.23
NPHP4-208ENST00000478423 Q6ZUG5 572 aa16.5■□□□□ 0.23
NPHP4-208ENST00000478423 CTAGE5O15320 804 aa16.5■□□□□ 0.23
NPHP4-208ENST00000478423 PANK2Q9BZ23 570 aa16.5■□□□□ 0.23
NPHP4-208ENST00000478423 CRNKL1Q9BZJ0 848 aaKnown RBP16.5■□□□□ 0.23
NPHP4-208ENST00000478423 DEF6Q9H4E7 631 aa16.5■□□□□ 0.23
NPHP4-208ENST00000478423 ZBTB43O43298 467 aa16.5■□□□□ 0.23
NPHP4-208ENST00000478423 ODF2Q5BJF6 829 aa16.5■□□□□ 0.23
NPHP4-208ENST00000478423 CNNM3Q8NE01 707 aa16.5■□□□□ 0.23
NPHP4-208ENST00000478423 CCDC112Q8NEF3 446 aa16.5■□□□□ 0.23
NPHP4-208ENST00000478423 SLC4A4Q9Y6R1 1079 aa16.5■□□□□ 0.23
NPHP4-208ENST00000478423 WTAPQ15007 396 aa16.49■□□□□ 0.23
NPHP4-208ENST00000478423 BIN1O00499 593 aa16.49■□□□□ 0.23
NPHP4-208ENST00000478423 TMEM132AQ24JP5 1023 aa16.49■□□□□ 0.23
NPHP4-208ENST00000478423 TPTE2Q6XPS3 522 aa16.49■□□□□ 0.23
NPHP4-208ENST00000478423 ZGPATQ8N5A5 531 aaKnown RBP16.49■□□□□ 0.23
NPHP4-208ENST00000478423 ZNF622Q969S3 477 aaKnown RBP eCLIP16.49■□□□□ 0.23
NPHP4-208ENST00000478423 PLXNC1O60486 1568 aa16.49■□□□□ 0.23
NPHP4-208ENST00000478423 TNNT3P45378 269 aaPredicted RBP16.49■□□□□ 0.23
NPHP4-208ENST00000478423 AK2P54819 239 aa16.49■□□□□ 0.23
NPHP4-208ENST00000478423 HSP90B2PQ58FF3 399 aa16.49■□□□□ 0.23
NPHP4-208ENST00000478423 CREB3L3Q68CJ9 461 aa16.49■□□□□ 0.23
NPHP4-208ENST00000478423 ZSCAN16Q9H4T2 348 aaPredicted RBP16.49■□□□□ 0.23
NPHP4-208ENST00000478423 KIF5BP33176 963 aa16.49■□□□□ 0.23
NPHP4-208ENST00000478423 NAA16Q6N069 864 aaPredicted RBP16.48■□□□□ 0.23
NPHP4-208ENST00000478423 VAT1LQ9HCJ6 419 aa16.48■□□□□ 0.23
NPHP4-208ENST00000478423 RUFY1Q96T51 708 aa16.48■□□□□ 0.23
NPHP4-208ENST00000478423 ARHGEF10O15013 1369 aa16.48■□□□□ 0.23
NPHP4-208ENST00000478423 EYA2O00167 538 aa16.48■□□□□ 0.23
NPHP4-208ENST00000478423 SFPQP23246 707 aaKnown RBP eCLIP16.48■□□□□ 0.23
NPHP4-208ENST00000478423 ZNF165P49910 485 aa16.48■□□□□ 0.23
NPHP4-208ENST00000478423 ZNF771Q7L3S4 317 aaPredicted RBP16.48■□□□□ 0.23
NPHP4-208ENST00000478423 CHST3Q7LGC8 479 aa16.48■□□□□ 0.23
NPHP4-208ENST00000478423 KDM5DQ9BY66 1539 aa16.47■□□□□ 0.23
NPHP4-208ENST00000478423 RNF113AO15541 343 aaKnown RBP16.47■□□□□ 0.23
NPHP4-208ENST00000478423 ESR2Q92731 530 aa16.47■□□□□ 0.23
NPHP4-208ENST00000478423 DBNDD2Q9BQY9 259 aa16.47■□□□□ 0.23
NPHP4-208ENST00000478423 KAT14Q9H8E8 782 aa16.47■□□□□ 0.23
NPHP4-208ENST00000478423 LMTK3Q96Q04 1460 aa16.47■□□□□ 0.23
NPHP4-208ENST00000478423 KCNQ3O43525 872 aa16.47■□□□□ 0.23
NPHP4-208ENST00000478423 ST5P78524 1137 aa16.47■□□□□ 0.23
NPHP4-208ENST00000478423 TEX35Q5T0J7 233 aa16.47■□□□□ 0.23
NPHP4-208ENST00000478423 RTCBQ9Y3I0 505 aaKnown RBP16.47■□□□□ 0.23
NPHP4-208ENST00000478423 KIAA0232Q92628 1395 aa16.47■□□□□ 0.23
NPHP4-208ENST00000478423 EIF5P55010 431 aaKnown RBP16.47■□□□□ 0.23
NPHP4-208ENST00000478423 NOM1Q5C9Z4 860 aaKnown RBP16.47■□□□□ 0.23
NPHP4-208ENST00000478423 CNPY2Q9Y2B0 182 aa16.47■□□□□ 0.23
NPHP4-208ENST00000478423 CCDC191Q8NCU4 936 aa16.47■□□□□ 0.23
NPHP4-208ENST00000478423 KRT23Q9C075 422 aa16.47■□□□□ 0.23
NPHP4-208ENST00000478423 A0A1B0GUL7 405 aa16.46■□□□□ 0.23
NPHP4-208ENST00000478423 HCLS1P14317 486 aaPredicted RBP16.46■□□□□ 0.23
NPHP4-208ENST00000478423 DNAJC10Q8IXB1 793 aa16.46■□□□□ 0.23
NPHP4-208ENST00000478423 CPA1P15085 419 aa16.46■□□□□ 0.23
NPHP4-208ENST00000478423 GIMAP6Q6P9H5 292 aa16.46■□□□□ 0.23
NPHP4-208ENST00000478423 KDM5AP29375 1690 aaKnown RBP16.46■□□□□ 0.23
NPHP4-208ENST00000478423 CCDC171Q6TFL3 1326 aa16.46■□□□□ 0.23
NPHP4-208ENST00000478423 PREX2Q70Z35 1606 aa16.46■□□□□ 0.23
NPHP4-208ENST00000478423 PRC1O43663 620 aa16.46■□□□□ 0.23
NPHP4-208ENST00000478423 GCKRQ14397 625 aa16.46■□□□□ 0.23
NPHP4-208ENST00000478423 VSIG10Q8N0Z9 540 aa16.46■□□□□ 0.23
NPHP4-208ENST00000478423 SUCLG2Q96I99 432 aa16.46■□□□□ 0.23
NPHP4-208ENST00000478423 PLEKHF1Q96S99 279 aa16.46■□□□□ 0.23
NPHP4-208ENST00000478423 ACBD3Q9H3P7 528 aa16.46■□□□□ 0.23
NPHP4-208ENST00000478423 NSFL1CQ9UNZ2 370 aaKnown RBP16.46■□□□□ 0.23
NPHP4-208ENST00000478423 ERCC6L2Q5T890 1561 aa16.46■□□□□ 0.22
NPHP4-208ENST00000478423 KDM5CP41229 1560 aa16.45■□□□□ 0.22
NPHP4-208ENST00000478423 RBM25P49756 843 aaKnown RBP16.45■□□□□ 0.22
NPHP4-208ENST00000478423 SYCP1Q15431 976 aa16.45■□□□□ 0.22
NPHP4-208ENST00000478423 ALG1Q9BT22 464 aa16.45■□□□□ 0.22
NPHP4-208ENST00000478423 LUC7LQ9NQ29 371 aaKnown RBP16.45■□□□□ 0.22
NPHP4-208ENST00000478423 DNM1Q05193 864 aaKnown RBP16.45■□□□□ 0.22
NPHP4-208ENST00000478423 TMTC2Q8N394 836 aa16.45■□□□□ 0.22
NPHP4-208ENST00000478423 CNNM2Q9H8M5 875 aa16.45■□□□□ 0.22
NPHP4-208ENST00000478423 SH3TC1Q8TE82 1336 aa16.45■□□□□ 0.22
NPHP4-208ENST00000478423 MYOM2P54296 1465 aa16.45■□□□□ 0.22
NPHP4-208ENST00000478423 PRIM1P49642 420 aaKnown RBP16.45■□□□□ 0.22
NPHP4-208ENST00000478423 RBM10P98175 930 aaKnown RBP16.45■□□□□ 0.22
NPHP4-208ENST00000478423 EFCAB6Q5THR3 1501 aa16.45■□□□□ 0.22
NPHP4-208ENST00000478423 GIGYF1O75420 1035 aaPredicted RBP16.45■□□□□ 0.22
NPHP4-208ENST00000478423 USP44Q9H0E7 712 aa16.45■□□□□ 0.22
NPHP4-208ENST00000478423 ZSCAN23Q3MJ62 389 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms