RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 TMC4Q7Z404 712 aa27.92■■■□□ 2.06
COL9A3-211ENST00000477612 SLC51AQ86UW1 340 aa27.92■■■□□ 2.06
COL9A3-211ENST00000477612 VPS33BQ9H267 617 aa27.92■■■□□ 2.06
COL9A3-211ENST00000477612 CWC25Q9NXE8 425 aaPredicted RBP27.92■■■□□ 2.06
COL9A3-211ENST00000477612 HSP90B1P14625 803 aaKnown RBP27.91■■■□□ 2.06
COL9A3-211ENST00000477612 RTFDC1Q9BY42 306 aaPredicted RBP27.91■■■□□ 2.06
COL9A3-211ENST00000477612 TMX4Q9H1E5 349 aaPredicted RBP27.91■■■□□ 2.06
COL9A3-211ENST00000477612 IGKV5-2P06315 115 aa27.9■■■□□ 2.06
COL9A3-211ENST00000477612 COL4A5P29400 1685 aa27.9■■■□□ 2.06
COL9A3-211ENST00000477612 MYH3P11055 1940 aa27.89■■■□□ 2.06
COL9A3-211ENST00000477612 CEP350Q5VT06 3117 aa27.89■■■□□ 2.06
COL9A3-211ENST00000477612 CCER2I3L3R5 266 aa27.89■■■□□ 2.06
COL9A3-211ENST00000477612 RTL5Q5HYW3 569 aaPredicted RBP27.89■■■□□ 2.06
COL9A3-211ENST00000477612 L3MBTL3Q96JM7 780 aaPredicted RBP27.89■■■□□ 2.06
COL9A3-211ENST00000477612 FLIIQ13045 1269 aa27.88■■■□□ 2.05
COL9A3-211ENST00000477612 CDHR2Q9BYE9 1310 aa27.88■■■□□ 2.05
COL9A3-211ENST00000477612 NEXNQ0ZGT2 675 aa27.87■■■□□ 2.05
COL9A3-211ENST00000477612 JDP2Q8WYK2 163 aa27.87■■■□□ 2.05
COL9A3-211ENST00000477612 PDE8AO60658 829 aa27.86■■■□□ 2.05
COL9A3-211ENST00000477612 SMC1BQ8NDV3 1235 aa27.86■■■□□ 2.05
COL9A3-211ENST00000477612 SUPT20HQ8NEM7 779 aa27.86■■■□□ 2.05
COL9A3-211ENST00000477612 CELF1Q92879 486 aaKnown RBP27.86■■■□□ 2.05
COL9A3-211ENST00000477612 COL4A1P02462 1669 aa27.86■■■□□ 2.05
COL9A3-211ENST00000477612 ZNF541Q9H0D2 1346 aa27.86■■■□□ 2.05
COL9A3-211ENST00000477612 MPNDQ8N594 471 aa27.85■■■□□ 2.05
COL9A3-211ENST00000477612 NEURL1BA8MQ27 555 aa27.84■■■□□ 2.05
COL9A3-211ENST00000477612 LARGE2Q8N3Y3 721 aa27.84■■■□□ 2.05
COL9A3-211ENST00000477612 DPP8Q6V1X1 898 aaPredicted RBP27.83■■■□□ 2.05
COL9A3-211ENST00000477612 GPC2Q8N158 579 aa27.83■■■□□ 2.05
COL9A3-211ENST00000477612 DUOX1Q9NRD9 1551 aa27.82■■■□□ 2.04
COL9A3-211ENST00000477612 LTBP1Q14766 1721 aa27.82■■■□□ 2.04
COL9A3-211ENST00000477612 IQCA1LA6NCM1 817 aa27.82■■■□□ 2.04
COL9A3-211ENST00000477612 APLP1P51693 650 aa27.82■■■□□ 2.04
COL9A3-211ENST00000477612 FKBP5Q13451 457 aaPredicted RBP27.82■■■□□ 2.04
COL9A3-211ENST00000477612 DNAAF4Q8WXU2 420 aa27.82■■■□□ 2.04
COL9A3-211ENST00000477612 RPS8P62241 208 aaKnown RBP27.81■■■□□ 2.04
COL9A3-211ENST00000477612 CWF19L2Q2TBE0 894 aaKnown RBP27.81■■■□□ 2.04
COL9A3-211ENST00000477612 H7C1W4 665 aa27.8■■■□□ 2.04
COL9A3-211ENST00000477612 PPIP5K2O43314 1243 aa27.8■■■□□ 2.04
COL9A3-211ENST00000477612 EIF6P56537 245 aaKnown RBP27.8■■■□□ 2.04
COL9A3-211ENST00000477612 CCDC152Q4G0S7 254 aa27.8■■■□□ 2.04
COL9A3-211ENST00000477612 JARID2Q92833 1246 aaPredicted RBP27.8■■■□□ 2.04
COL9A3-211ENST00000477612 KIAA2012Q0VF49 1180 aa27.79■■■□□ 2.04
COL9A3-211ENST00000477612 AOC3Q16853 763 aa27.79■■■□□ 2.04
COL9A3-211ENST00000477612 LINS1Q8NG48 757 aa27.79■■■□□ 2.04
COL9A3-211ENST00000477612 GCKRQ14397 625 aa27.78■■■□□ 2.04
COL9A3-211ENST00000477612 NIM1KQ8IY84 436 aa27.78■■■□□ 2.04
COL9A3-211ENST00000477612 TAF1DQ9H5J8 278 aaPredicted RBP27.78■■■□□ 2.04
COL9A3-211ENST00000477612 SEC31BQ9NQW1 1179 aa27.78■■■□□ 2.04
COL9A3-211ENST00000477612 E9PSI1 815 aa27.77■■■□□ 2.04
COL9A3-211ENST00000477612 ADAMTSL1Q8N6G6 1762 aa27.76■■■□□ 2.03
COL9A3-211ENST00000477612 SLFN5Q08AF3 891 aa27.76■■■□□ 2.03
COL9A3-211ENST00000477612 PLA2G12BQ9BX93 195 aa27.76■■■□□ 2.03
COL9A3-211ENST00000477612 HACL1Q9UJ83 578 aa27.76■■■□□ 2.03
COL9A3-211ENST00000477612 CASP7P55210 303 aa27.75■■■□□ 2.03
COL9A3-211ENST00000477612 CTSWP56202 376 aa27.75■■■□□ 2.03
COL9A3-211ENST00000477612 TTLL11Q8NHH1 800 aa27.75■■■□□ 2.03
COL9A3-211ENST00000477612 ZNRF3Q9ULT6 936 aa27.75■■■□□ 2.03
COL9A3-211ENST00000477612 NSFL1CQ9UNZ2 370 aaKnown RBP27.75■■■□□ 2.03
COL9A3-211ENST00000477612 RTL9Q8NET4 1388 aa27.74■■■□□ 2.03
COL9A3-211ENST00000477612 PODXL2Q9NZ53 605 aa27.74■■■□□ 2.03
COL9A3-211ENST00000477612 GPSM2P81274 684 aa27.73■■■□□ 2.03
COL9A3-211ENST00000477612 CHADLQ6NUI6 762 aa27.73■■■□□ 2.03
COL9A3-211ENST00000477612 POTEIP0CG38 1075 aa27.72■■■□□ 2.03
COL9A3-211ENST00000477612 POTEJP0CG39 1038 aa27.72■■■□□ 2.03
COL9A3-211ENST00000477612 BEND3Q5T5X7 828 aa27.72■■■□□ 2.03
COL9A3-211ENST00000477612 UBE3BQ7Z3V4 1068 aa27.72■■■□□ 2.03
COL9A3-211ENST00000477612 DNAJC5GQ8N7S2 189 aa27.72■■■□□ 2.03
COL9A3-211ENST00000477612 POLLQ9UGP5 575 aa27.72■■■□□ 2.03
COL9A3-211ENST00000477612 EPHX2P34913 555 aa27.71■■■□□ 2.03
COL9A3-211ENST00000477612 CXCL9Q07325 125 aa27.71■■■□□ 2.03
COL9A3-211ENST00000477612 LDHDQ86WU2 507 aa27.71■■■□□ 2.03
COL9A3-211ENST00000477612 TRMT2AQ8IZ69 625 aaKnown RBP27.71■■■□□ 2.03
COL9A3-211ENST00000477612 GJA3Q9Y6H8 435 aa27.71■■■□□ 2.03
COL9A3-211ENST00000477612 SPEF2Q9C093 1822 aa27.7■■■□□ 2.02
COL9A3-211ENST00000477612 F6X3S4 739 aa27.7■■■□□ 2.02
COL9A3-211ENST00000477612 SCNN1DP51172 638 aa27.7■■■□□ 2.02
COL9A3-211ENST00000477612 WASHC4Q2M389 1173 aa27.7■■■□□ 2.02
COL9A3-211ENST00000477612 PNMA8AQ86V59 439 aaPredicted RBP27.7■■■□□ 2.02
COL9A3-211ENST00000477612 ANKRD18AQ8IVF6 992 aa27.7■■■□□ 2.02
COL9A3-211ENST00000477612 CCDC85AQ96PX6 553 aaPredicted RBP27.7■■■□□ 2.02
COL9A3-211ENST00000477612 CSF1RP07333 972 aa27.69■■■□□ 2.02
COL9A3-211ENST00000477612 TBC1D16Q8TBP0 767 aa27.69■■■□□ 2.02
COL9A3-211ENST00000477612 CDC5LQ99459 802 aaKnown RBP27.69■■■□□ 2.02
COL9A3-211ENST00000477612 EYA3Q99504 573 aa27.68■■■□□ 2.02
COL9A3-211ENST00000477612 GREM2Q9H772 168 aa27.68■■■□□ 2.02
COL9A3-211ENST00000477612 YDJCA8MPS7 323 aa27.66■■■□□ 2.02
COL9A3-211ENST00000477612 C6orf229H3BNL8 230 aa27.66■■■□□ 2.02
COL9A3-211ENST00000477612 CIAPIN1Q6FI81 312 aa27.66■■■□□ 2.02
COL9A3-211ENST00000477612 MRPL50Q8N5N7 158 aaKnown RBP27.66■■■□□ 2.02
COL9A3-211ENST00000477612 CDCA7LQ96GN5 454 aa27.66■■■□□ 2.02
COL9A3-211ENST00000477612 BSDC1Q9NW68 430 aaPredicted RBP27.66■■■□□ 2.02
COL9A3-211ENST00000477612 LMOD1P29536 600 aaPredicted RBP27.65■■■□□ 2.02
COL9A3-211ENST00000477612 TNIP1Q15025 636 aa27.65■■■□□ 2.02
COL9A3-211ENST00000477612 ALDH1L1O75891 902 aa27.64■■■□□ 2.02
COL9A3-211ENST00000477612 PSME4Q14997 1843 aa27.63■■■□□ 2.01
COL9A3-211ENST00000477612 EPS15P42566 896 aa27.63■■■□□ 2.01
COL9A3-211ENST00000477612 EAPPQ56P03 285 aaPredicted RBP27.63■■■□□ 2.01
COL9A3-211ENST00000477612 GPRC5DQ9NZD1 345 aa27.63■■■□□ 2.01
COL9A3-211ENST00000477612 ANKIB1Q9P2G1 1089 aa27.63■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms