RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 CRYBG1Q9Y4K1 1723 aa9.73□□□□□ -0.85
CCDC88A-213ENST00000476903 LILRA1O75019 489 aa9.72□□□□□ -0.85
CCDC88A-213ENST00000476903 ADD1P35611 737 aaKnown RBP9.72□□□□□ -0.85
CCDC88A-213ENST00000476903 TRIM26Q12899 539 aaPredicted RBP9.72□□□□□ -0.85
CCDC88A-213ENST00000476903 PLA2G4EQ3MJ16 856 aa9.72□□□□□ -0.85
CCDC88A-213ENST00000476903 UNC5CLQ8IV45 518 aa9.72□□□□□ -0.85
CCDC88A-213ENST00000476903 TMPRSS4Q9NRS4 437 aa9.72□□□□□ -0.85
CCDC88A-213ENST00000476903 ROCK2O75116 1388 aaKnown RBP9.72□□□□□ -0.85
CCDC88A-213ENST00000476903 SLC24A1O60721 1099 aa9.71□□□□□ -0.86
CCDC88A-213ENST00000476903 ADAM23O75077 832 aa9.71□□□□□ -0.86
CCDC88A-213ENST00000476903 CLK2P49760 499 aaKnown RBP9.71□□□□□ -0.86
CCDC88A-213ENST00000476903 LRRN4Q8WUT4 740 aa9.71□□□□□ -0.86
CCDC88A-213ENST00000476903 DCAF5Q96JK2 942 aa9.71□□□□□ -0.86
CCDC88A-213ENST00000476903 POLR3AO14802 1390 aaPredicted RBP9.71□□□□□ -0.86
CCDC88A-213ENST00000476903 COL14A1Q05707 1796 aaKnown RBP9.7□□□□□ -0.86
CCDC88A-213ENST00000476903 SRPK2P78362 688 aaKnown RBP9.7□□□□□ -0.86
CCDC88A-213ENST00000476903 PDE4DQ08499 809 aa9.7□□□□□ -0.86
CCDC88A-213ENST00000476903 GJD4Q96KN9 370 aaPredicted RBP9.7□□□□□ -0.86
CCDC88A-213ENST00000476903 PHRF1Q9P1Y6 1649 aaKnown RBP9.7□□□□□ -0.86
CCDC88A-213ENST00000476903 NRAPQ86VF7 1730 aa9.7□□□□□ -0.86
CCDC88A-213ENST00000476903 ADH1AP07327 375 aa9.69□□□□□ -0.86
CCDC88A-213ENST00000476903 GLI3P10071 1580 aa9.69□□□□□ -0.86
CCDC88A-213ENST00000476903 ACEP12821 1306 aa9.69□□□□□ -0.86
CCDC88A-213ENST00000476903 PPIP5K1Q6PFW1 1433 aa9.69□□□□□ -0.86
CCDC88A-213ENST00000476903 ATAD2Q6PL18 1390 aa9.69□□□□□ -0.86
CCDC88A-213ENST00000476903 RALGAPBQ86X10 1494 aa9.69□□□□□ -0.86
CCDC88A-213ENST00000476903 ZNF784Q8NCA9 323 aaPredicted RBP9.69□□□□□ -0.86
CCDC88A-213ENST00000476903 CNTNAP5Q8WYK1 1306 aa9.69□□□□□ -0.86
CCDC88A-213ENST00000476903 BRWD3Q6RI45 1802 aa9.68□□□□□ -0.86
CCDC88A-213ENST00000476903 EP400Q96L91 3159 aa9.68□□□□□ -0.86
CCDC88A-213ENST00000476903 TONSLQ96HA7 1378 aa9.68□□□□□ -0.86
CCDC88A-213ENST00000476903 EVC2Q86UK5 1308 aa9.68□□□□□ -0.86
CCDC88A-213ENST00000476903 FAM83GA6ND36 823 aa9.68□□□□□ -0.86
CCDC88A-213ENST00000476903 PTGIRP43119 386 aa9.68□□□□□ -0.86
CCDC88A-213ENST00000476903 NBPF8Q3BBV2 869 aa9.68□□□□□ -0.86
CCDC88A-213ENST00000476903 ZBTB33Q86T24 672 aa9.68□□□□□ -0.86
CCDC88A-213ENST00000476903 SPOCK3Q9BQ16 436 aa9.68□□□□□ -0.86
CCDC88A-213ENST00000476903 ZC3H4Q9UPT8 1303 aaKnown RBP9.67□□□□□ -0.86
CCDC88A-213ENST00000476903 PROCP04070 461 aa9.67□□□□□ -0.86
CCDC88A-213ENST00000476903 MAP3K10Q02779 954 aa9.67□□□□□ -0.86
CCDC88A-213ENST00000476903 NR6A1Q15406 480 aa9.67□□□□□ -0.86
CCDC88A-213ENST00000476903 VPS72Q15906 364 aa9.67□□□□□ -0.86
CCDC88A-213ENST00000476903 MSTNO14793 375 aa9.66□□□□□ -0.86
CCDC88A-213ENST00000476903 ADAM32Q8TC27 787 aa9.66□□□□□ -0.86
CCDC88A-213ENST00000476903 ZNF837Q96EG3 531 aaPredicted RBP9.66□□□□□ -0.86
CCDC88A-213ENST00000476903 POLR3EQ9NVU0 708 aa9.66□□□□□ -0.86
CCDC88A-213ENST00000476903 CCDC9Q9Y3X0 531 aaKnown RBP9.66□□□□□ -0.86
CCDC88A-213ENST00000476903 AKAP12Q02952 1782 aa9.65□□□□□ -0.86
CCDC88A-213ENST00000476903 BRD4O60885 1362 aaPredicted RBP9.65□□□□□ -0.86
CCDC88A-213ENST00000476903 LYSMD3Q7Z3D4 306 aa9.65□□□□□ -0.86
CCDC88A-213ENST00000476903 ABTB2Q8N961 1025 aa9.65□□□□□ -0.86
CCDC88A-213ENST00000476903 PRDM11Q9NQV5 511 aa9.65□□□□□ -0.86
CCDC88A-213ENST00000476903 MBIPQ9NS73 344 aa9.65□□□□□ -0.86
CCDC88A-213ENST00000476903 BTG4Q9NY30 223 aa9.65□□□□□ -0.86
CCDC88A-213ENST00000476903 GPSM3Q9Y4H4 160 aa9.65□□□□□ -0.86
CCDC88A-213ENST00000476903 NRKQ7Z2Y5 1582 aa9.65□□□□□ -0.86
CCDC88A-213ENST00000476903 ERVH48-1M5A8F1 160 aa9.64□□□□□ -0.87
CCDC88A-213ENST00000476903 NUTM2GQ5VZR2 741 aa9.64□□□□□ -0.87
CCDC88A-213ENST00000476903 CARD11Q9BXL7 1154 aa9.64□□□□□ -0.87
CCDC88A-213ENST00000476903 CABP1Q9NZU7 370 aa9.64□□□□□ -0.87
CCDC88A-213ENST00000476903 USP6P35125 1406 aa9.64□□□□□ -0.87
CCDC88A-213ENST00000476903 KIAA0232Q92628 1395 aa9.63□□□□□ -0.87
CCDC88A-213ENST00000476903 SBNO2Q9Y2G9 1366 aa9.63□□□□□ -0.87
CCDC88A-213ENST00000476903 ESPNB1AK53 854 aa9.63□□□□□ -0.87
CCDC88A-213ENST00000476903 RNF144AP50876 292 aaPredicted RBP9.63□□□□□ -0.87
CCDC88A-213ENST00000476903 PTK2Q05397 1052 aa9.63□□□□□ -0.87
CCDC88A-213ENST00000476903 DBN1Q16643 649 aa9.63□□□□□ -0.87
CCDC88A-213ENST00000476903 NLRP13Q86W25 1043 aa9.63□□□□□ -0.87
CCDC88A-213ENST00000476903 ENAMQ9NRM1 1142 aa9.63□□□□□ -0.87
CCDC88A-213ENST00000476903 USP19O94966 1318 aa9.62□□□□□ -0.87
CCDC88A-213ENST00000476903 PIK3C2AO00443 1686 aa9.62□□□□□ -0.87
CCDC88A-213ENST00000476903 CCDC125Q86Z20 511 aa9.62□□□□□ -0.87
CCDC88A-213ENST00000476903 SEPT12Q8IYM1 358 aa9.62□□□□□ -0.87
CCDC88A-213ENST00000476903 TRIM22Q8IYM9 498 aa9.62□□□□□ -0.87
CCDC88A-213ENST00000476903 ACDQ96AP0 544 aa9.62□□□□□ -0.87
CCDC88A-213ENST00000476903 MON2Q7Z3U7 1717 aa9.62□□□□□ -0.87
CCDC88A-213ENST00000476903 CPDO75976 1380 aa9.62□□□□□ -0.87
CCDC88A-213ENST00000476903 LMO7Q8WWI1 1683 aa9.61□□□□□ -0.87
CCDC88A-213ENST00000476903 SPATA31A5Q5VU36 1347 aa9.61□□□□□ -0.87
CCDC88A-213ENST00000476903 SPATA31A7Q8IWB4 1347 aa9.61□□□□□ -0.87
CCDC88A-213ENST00000476903 PHF20L1A8MW92 1017 aa9.61□□□□□ -0.87
CCDC88A-213ENST00000476903 GPR25O00155 361 aa9.61□□□□□ -0.87
CCDC88A-213ENST00000476903 BCRP11274 1271 aa9.61□□□□□ -0.87
CCDC88A-213ENST00000476903 RHOQP17081 205 aa9.61□□□□□ -0.87
CCDC88A-213ENST00000476903 ZC3H6P61129 1189 aaKnown RBP9.61□□□□□ -0.87
CCDC88A-213ENST00000476903 CHRNA2Q15822 529 aa9.61□□□□□ -0.87
CCDC88A-213ENST00000476903 EPS8L1Q8TE68 723 aa9.61□□□□□ -0.87
CCDC88A-213ENST00000476903 GMCL1Q96IK5 515 aa9.61□□□□□ -0.87
CCDC88A-213ENST00000476903 SSH2Q76I76 1423 aa9.6□□□□□ -0.87
CCDC88A-213ENST00000476903 NBPF20Q3BBV1 942 aa9.6□□□□□ -0.87
CCDC88A-213ENST00000476903 PRICKLE2Q7Z3G6 844 aa9.6□□□□□ -0.87
CCDC88A-213ENST00000476903 KRT27Q7Z3Y8 459 aa9.6□□□□□ -0.87
CCDC88A-213ENST00000476903 BEND7Q8N7W2 519 aaPredicted RBP9.6□□□□□ -0.87
CCDC88A-213ENST00000476903 KRTAP4-8Q9BYQ9 185 aa9.6□□□□□ -0.87
CCDC88A-213ENST00000476903 RSPH6AQ9H0K4 717 aa9.6□□□□□ -0.87
CCDC88A-213ENST00000476903 THSD7AQ9UPZ6 1657 aa9.6□□□□□ -0.87
CCDC88A-213ENST00000476903 SLIT3O75094 1523 aa9.6□□□□□ -0.87
CCDC88A-213ENST00000476903 BLMP54132 1417 aaPredicted RBP9.59□□□□□ -0.87
CCDC88A-213ENST00000476903 GCP02774 474 aa9.59□□□□□ -0.87
CCDC88A-213ENST00000476903 EVA1CP58658 441 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms