RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 RIC1Q4ADV7 1423 aa11.85□□□□□ -0.51
USP39-214ENST00000474572 A0A0D9SFI3 127 aa11.84□□□□□ -0.51
USP39-214ENST00000474572 TRAK2O60296 914 aa11.84□□□□□ -0.51
USP39-214ENST00000474572 NLRP10Q86W26 655 aa11.84□□□□□ -0.51
USP39-214ENST00000474572 FAM227BQ96M60 508 aa11.84□□□□□ -0.51
USP39-214ENST00000474572 FSD1Q9BTV5 496 aa11.84□□□□□ -0.51
USP39-214ENST00000474572 THSD7AQ9UPZ6 1657 aa11.84□□□□□ -0.51
USP39-214ENST00000474572 MYH14Q7Z406 1995 aaKnown RBP11.83□□□□□ -0.52
USP39-214ENST00000474572 ABCC12Q96J65 1359 aa11.83□□□□□ -0.52
USP39-214ENST00000474572 BAG4O95429 457 aaKnown RBP11.83□□□□□ -0.52
USP39-214ENST00000474572 PRIM1P49642 420 aaKnown RBP11.83□□□□□ -0.52
USP39-214ENST00000474572 DDB1Q16531 1140 aa11.83□□□□□ -0.52
USP39-214ENST00000474572 SKOR2Q2VWA4 1001 aaPredicted RBP11.83□□□□□ -0.52
USP39-214ENST00000474572 TSGA10IPQ3SY00 556 aa11.83□□□□□ -0.52
USP39-214ENST00000474572 USPL1Q5W0Q7 1092 aa11.83□□□□□ -0.52
USP39-214ENST00000474572 UPF3BQ9BZI7 483 aaKnown RBP11.83□□□□□ -0.52
USP39-214ENST00000474572 ZSWIM6Q9HCJ5 1215 aa11.83□□□□□ -0.52
USP39-214ENST00000474572 ZDHHC9Q9Y397 364 aa11.83□□□□□ -0.52
USP39-214ENST00000474572 RBM8AQ9Y5S9 174 aaKnown RBP11.83□□□□□ -0.52
USP39-214ENST00000474572 MYH7P12883 1935 aa11.83□□□□□ -0.52
USP39-214ENST00000474572 SH3TC1Q8TE82 1336 aa11.83□□□□□ -0.52
USP39-214ENST00000474572 SCN7AQ01118 1682 aa11.82□□□□□ -0.52
USP39-214ENST00000474572 TOM1O60784 492 aa11.82□□□□□ -0.52
USP39-214ENST00000474572 EIF5P55010 431 aaKnown RBP11.82□□□□□ -0.52
USP39-214ENST00000474572 HLFQ16534 295 aa11.82□□□□□ -0.52
USP39-214ENST00000474572 LRRC24Q50LG9 513 aa11.82□□□□□ -0.52
USP39-214ENST00000474572 ZNF34Q8IZ26 560 aa11.82□□□□□ -0.52
USP39-214ENST00000474572 MARCH10Q8NA82 808 aaPredicted RBP11.82□□□□□ -0.52
USP39-214ENST00000474572 KBTBD3Q8NAB2 608 aa11.82□□□□□ -0.52
USP39-214ENST00000474572 CASZ1Q86V15 1759 aa11.82□□□□□ -0.52
USP39-214ENST00000474572 LAMA4Q16363 1823 aa11.81□□□□□ -0.52
USP39-214ENST00000474572 NHSQ6T4R5 1651 aa11.81□□□□□ -0.52
USP39-214ENST00000474572 SLC27A2O14975 620 aa11.81□□□□□ -0.52
USP39-214ENST00000474572 ADAMTS2O95450 1211 aa11.81□□□□□ -0.52
USP39-214ENST00000474572 BRD1O95696 1058 aa11.81□□□□□ -0.52
USP39-214ENST00000474572 AK2P54819 239 aa11.81□□□□□ -0.52
USP39-214ENST00000474572 PKP1Q13835 747 aa11.81□□□□□ -0.52
USP39-214ENST00000474572 VPS53Q5VIR6 699 aa11.81□□□□□ -0.52
USP39-214ENST00000474572 CREB3L3Q68CJ9 461 aa11.81□□□□□ -0.52
USP39-214ENST00000474572 PUS3Q9BZE2 481 aaKnown RBP11.81□□□□□ -0.52
USP39-214ENST00000474572 ALDH8A1Q9H2A2 487 aaPredicted RBP11.81□□□□□ -0.52
USP39-214ENST00000474572 HMG20BQ9P0W2 317 aa11.81□□□□□ -0.52
USP39-214ENST00000474572 CHMP3Q9Y3E7 222 aa11.81□□□□□ -0.52
USP39-214ENST00000474572 AKAP11Q9UKA4 1901 aa11.81□□□□□ -0.52
USP39-214ENST00000474572 BCL9LQ86UU0 1499 aa11.81□□□□□ -0.52
USP39-214ENST00000474572 A0A1B0GUL6 1792 aa11.8□□□□□ -0.52
USP39-214ENST00000474572 A0A1B0GUL7 405 aa11.8□□□□□ -0.52
USP39-214ENST00000474572 FSD2A1L4K1 749 aa11.8□□□□□ -0.52
USP39-214ENST00000474572 TAF5LO75529 589 aa11.8□□□□□ -0.52
USP39-214ENST00000474572 CCDC57Q2TAC2 916 aa11.8□□□□□ -0.52
USP39-214ENST00000474572 ADCK5Q3MIX3 580 aa11.8□□□□□ -0.52
USP39-214ENST00000474572 PRPF40BQ6NWY9 871 aaKnown RBP11.8□□□□□ -0.52
USP39-214ENST00000474572 INTS5Q6P9B9 1019 aaKnown RBP11.8□□□□□ -0.52
USP39-214ENST00000474572 RUFY3Q7L099 469 aa11.8□□□□□ -0.52
USP39-214ENST00000474572 ZNF589Q86UQ0 364 aaPredicted RBP11.8□□□□□ -0.52
USP39-214ENST00000474572 DZIP3Q86Y13 1208 aaKnown RBP11.8□□□□□ -0.52
USP39-214ENST00000474572 EDC3Q96F86 508 aaKnown RBP11.8□□□□□ -0.52
USP39-214ENST00000474572 ZNF594Q96JF6 807 aaPredicted RBP11.8□□□□□ -0.52
USP39-214ENST00000474572 AK7Q96M32 723 aa11.8□□□□□ -0.52
USP39-214ENST00000474572 UBN2Q6ZU65 1347 aa11.8□□□□□ -0.52
USP39-214ENST00000474572 GOLGA6L22H0YM25 854 aa11.79□□□□□ -0.52
USP39-214ENST00000474572 CTSWP56202 376 aa11.79□□□□□ -0.52
USP39-214ENST00000474572 TTLL11Q8NHH1 800 aa11.79□□□□□ -0.52
USP39-214ENST00000474572 FAM89AQ96GI7 184 aa11.79□□□□□ -0.52
USP39-214ENST00000474572 ZSCAN31Q96LW9 406 aaPredicted RBP11.79□□□□□ -0.52
USP39-214ENST00000474572 CCDC87Q9NVE4 849 aa11.79□□□□□ -0.52
USP39-214ENST00000474572 CEP126Q9P2H0 1117 aa11.79□□□□□ -0.52
USP39-214ENST00000474572 ISY1Q9ULR0 285 aaKnown RBP11.79□□□□□ -0.52
USP39-214ENST00000474572 LIMCH1Q9UPQ0 1083 aa11.79□□□□□ -0.52
USP39-214ENST00000474572 AKAP2Q9Y2D5 859 aa11.79□□□□□ -0.52
USP39-214ENST00000474572 DOCK2Q92608 1830 aa11.79□□□□□ -0.52
USP39-214ENST00000474572 COL24A1Q17RW2 1714 aa11.78□□□□□ -0.52
USP39-214ENST00000474572 PDE8AO60658 829 aa11.78□□□□□ -0.52
USP39-214ENST00000474572 ZKSCAN1P17029 563 aaPredicted RBP11.78□□□□□ -0.52
USP39-214ENST00000474572 CASTP20810 708 aaKnown RBP11.78□□□□□ -0.52
USP39-214ENST00000474572 PSMA5P28066 241 aa11.78□□□□□ -0.52
USP39-214ENST00000474572 TIMM10P62072 90 aa11.78□□□□□ -0.52
USP39-214ENST00000474572 IFIT5Q13325 482 aaKnown RBP11.78□□□□□ -0.52
USP39-214ENST00000474572 VPS72Q15906 364 aa11.78□□□□□ -0.52
USP39-214ENST00000474572 MCMDC2Q4G0Z9 681 aa11.78□□□□□ -0.52
USP39-214ENST00000474572 ZMYM1Q5SVZ6 1142 aa11.78□□□□□ -0.52
USP39-214ENST00000474572 RNF20Q5VTR2 975 aa11.78□□□□□ -0.52
USP39-214ENST00000474572 SMARCC1Q92922 1105 aaPredicted RBP11.78□□□□□ -0.52
USP39-214ENST00000474572 SYTL4Q96C24 671 aaPredicted RBP11.78□□□□□ -0.52
USP39-214ENST00000474572 JAKMIP1Q96N16 626 aaKnown RBP11.78□□□□□ -0.52
USP39-214ENST00000474572 HELLSQ9NRZ9 838 aa11.78□□□□□ -0.52
USP39-214ENST00000474572 PAG1Q9NWQ8 432 aa11.78□□□□□ -0.52
USP39-214ENST00000474572 ZNF330Q9Y3S2 320 aaPredicted RBP11.78□□□□□ -0.52
USP39-214ENST00000474572 RIPOR2Q9Y4F9 1068 aa11.78□□□□□ -0.52
USP39-214ENST00000474572 RTL9Q8NET4 1388 aa11.78□□□□□ -0.52
USP39-214ENST00000474572 LY75O60449 1722 aa11.77□□□□□ -0.52
USP39-214ENST00000474572 BTAF1O14981 1849 aa11.77□□□□□ -0.52
USP39-214ENST00000474572 LOC102724428A0A0B4J2F2 783 aa11.77□□□□□ -0.53
USP39-214ENST00000474572 RGL2O15211 777 aa11.77□□□□□ -0.53
USP39-214ENST00000474572 CAMTA2O94983 1202 aa11.77□□□□□ -0.53
USP39-214ENST00000474572 CRKLP46109 303 aaKnown RBP11.77□□□□□ -0.53
USP39-214ENST00000474572 SIK1P57059 783 aa11.77□□□□□ -0.53
USP39-214ENST00000474572 ITPK1Q13572 414 aa11.77□□□□□ -0.53
USP39-214ENST00000474572 KLHL40Q2TBA0 621 aa11.77□□□□□ -0.53
USP39-214ENST00000474572 L1TD1Q5T7N2 865 aaKnown RBP11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms