RNA–Protein interactions for RNA: ENST00000473212.1

COL18A1-207, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 2,515 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-207ENST00000473212 ERBB3P21860 1342 aa25.09■■□□□ 1.61
COL18A1-207ENST00000473212 ATP5J2-PTCD1G3V325 749 aa25.09■■□□□ 1.61
COL18A1-207ENST00000473212 PTCD1O75127 700 aaKnown RBP25.09■■□□□ 1.61
COL18A1-207ENST00000473212 KRT28Q7Z3Y7 464 aa25.09■■□□□ 1.61
COL18A1-207ENST00000473212 BLOC1S2Q6QNY1 142 aa25.08■■□□□ 1.61
COL18A1-207ENST00000473212 KCNF1Q9H3M0 494 aa25.08■■□□□ 1.61
COL18A1-207ENST00000473212 MED23Q9ULK4 1368 aa25.08■■□□□ 1.61
COL18A1-207ENST00000473212 PSMA5P28066 241 aa25.08■■□□□ 1.6
COL18A1-207ENST00000473212 HMGN5P82970 282 aaKnown RBP25.08■■□□□ 1.6
COL18A1-207ENST00000473212 LARP1Q6PKG0 1096 aaKnown RBP25.08■■□□□ 1.6
COL18A1-207ENST00000473212 KLHL34Q8N239 644 aa25.08■■□□□ 1.6
COL18A1-207ENST00000473212 HIP1O00291 1037 aa25.07■■□□□ 1.6
COL18A1-207ENST00000473212 HDAC5Q9UQL6 1122 aa25.07■■□□□ 1.6
COL18A1-207ENST00000473212 TFCP2Q12800 502 aa25.07■■□□□ 1.6
COL18A1-207ENST00000473212 PYCARDQ9ULZ3 195 aa25.07■■□□□ 1.6
COL18A1-207ENST00000473212 SLIT3O75094 1523 aa25.06■■□□□ 1.6
COL18A1-207ENST00000473212 JAK2O60674 1132 aa25.06■■□□□ 1.6
COL18A1-207ENST00000473212 RPS6KB1P23443 525 aa25.06■■□□□ 1.6
COL18A1-207ENST00000473212 SLC52A2Q9HAB3 445 aa25.06■■□□□ 1.6
COL18A1-207ENST00000473212 TAF5LO75529 589 aa25.06■■□□□ 1.6
COL18A1-207ENST00000473212 UBE3BQ7Z3V4 1068 aa25.06■■□□□ 1.6
COL18A1-207ENST00000473212 LRRC2Q9BYS8 371 aa25.06■■□□□ 1.6
COL18A1-207ENST00000473212 NPHP3Q7Z494 1330 aa25.05■■□□□ 1.6
COL18A1-207ENST00000473212 NUP62CLQ9H1M0 184 aa25.05■■□□□ 1.6
COL18A1-207ENST00000473212 MAP3K11Q16584 847 aa25.05■■□□□ 1.6
COL18A1-207ENST00000473212 KIAA1524Q8TCG1 905 aa25.05■■□□□ 1.6
COL18A1-207ENST00000473212 CABLES1Q8TDN4 633 aa25.05■■□□□ 1.6
COL18A1-207ENST00000473212 DNAJC2Q99543 621 aaKnown RBP25.05■■□□□ 1.6
COL18A1-207ENST00000473212 NEXNQ0ZGT2 675 aa25.04■■□□□ 1.6
COL18A1-207ENST00000473212 DDX11Q96FC9 970 aa25.04■■□□□ 1.6
COL18A1-207ENST00000473212 METTL22Q9BUU2 404 aaPredicted RBP25.04■■□□□ 1.6
COL18A1-207ENST00000473212 PDCP20941 246 aa25.04■■□□□ 1.6
COL18A1-207ENST00000473212 PTPN12Q05209 780 aaKnown RBP25.04■■□□□ 1.6
COL18A1-207ENST00000473212 LRP10Q7Z4F1 713 aa25.04■■□□□ 1.6
COL18A1-207ENST00000473212 CKAP2LQ8IYA6 745 aa25.04■■□□□ 1.6
COL18A1-207ENST00000473212 RAPGEF4Q8WZA2 1011 aa25.04■■□□□ 1.6
COL18A1-207ENST00000473212 DBNDD2Q9BQY9 259 aa25.04■■□□□ 1.6
COL18A1-207ENST00000473212 SNRKQ9NRH2 765 aa25.04■■□□□ 1.6
COL18A1-207ENST00000473212 OVOS2A0A0G2JMS6 1433 aa25.03■■□□□ 1.6
COL18A1-207ENST00000473212 FAM177BA6PVY3 158 aa25.03■■□□□ 1.6
COL18A1-207ENST00000473212 RFX5P48382 616 aaPredicted RBP25.03■■□□□ 1.6
COL18A1-207ENST00000473212 RNF20Q5VTR2 975 aa25.03■■□□□ 1.6
COL18A1-207ENST00000473212 FAM200AQ8TCP9 573 aa25.03■■□□□ 1.6
COL18A1-207ENST00000473212 MRVI1Q9Y6F6 885 aa25.03■■□□□ 1.6
COL18A1-207ENST00000473212 GTF2F1P35269 517 aaKnown RBP eCLIP25.03■■□□□ 1.62e-6■■■□□ 19.2
COL18A1-207ENST00000473212 TYRO3Q06418 890 aa25.03■■□□□ 1.6
COL18A1-207ENST00000473212 ZNF710Q8N1W2 664 aa25.03■■□□□ 1.6
COL18A1-207ENST00000473212 ELP1O95163 1332 aa25.02■■□□□ 1.6
COL18A1-207ENST00000473212 PPFIA3O75145 1194 aa25.02■■□□□ 1.6
COL18A1-207ENST00000473212 PHKG2P15735 406 aa25.02■■□□□ 1.6
COL18A1-207ENST00000473212 ANKRD1Q15327 319 aa25.02■■□□□ 1.6
COL18A1-207ENST00000473212 ANKRD13DQ6ZTN6 518 aa25.02■■□□□ 1.6
COL18A1-207ENST00000473212 TNNI3KQ59H18 835 aa25.02■■□□□ 1.6
COL18A1-207ENST00000473212 DDX46Q7L014 1031 aaKnown RBP25.02■■□□□ 1.6
COL18A1-207ENST00000473212 LUZP1Q86V48 1076 aa25.02■■□□□ 1.6
COL18A1-207ENST00000473212 FPGT-TNNI3KV9GXZ4 949 aa25.02■■□□□ 1.6
COL18A1-207ENST00000473212 DACT1Q9NYF0 836 aa25.01■■□□□ 1.59
COL18A1-207ENST00000473212 MEGF6O75095 1541 aa25.01■■□□□ 1.59
COL18A1-207ENST00000473212 TPM3P06753 285 aa25.01■■□□□ 1.59
COL18A1-207ENST00000473212 CHRNA2Q15822 529 aa25.01■■□□□ 1.59
COL18A1-207ENST00000473212 GOLGA6L6A8MZA4 724 aa25■■□□□ 1.59
COL18A1-207ENST00000473212 PDIA4P13667 645 aaKnown RBP25■■□□□ 1.59
COL18A1-207ENST00000473212 FOSBP53539 338 aa25■■□□□ 1.59
COL18A1-207ENST00000473212 SPATA32Q96LK8 384 aa25■■□□□ 1.59
COL18A1-207ENST00000473212 TNMDQ9H2S6 317 aa25■■□□□ 1.59
COL18A1-207ENST00000473212 ZNF609O15014 1411 aa25■■□□□ 1.59
COL18A1-207ENST00000473212 A0A0G2JLW4 131 aa25■■□□□ 1.59
COL18A1-207ENST00000473212 GOLGA6L4A6NEF3 574 aa25■■□□□ 1.59
COL18A1-207ENST00000473212 KIF3AQ9Y496 699 aa25■■□□□ 1.59
COL18A1-207ENST00000473212 SCAND2PQ9GZW5 306 aaPredicted RBP24.99■■□□□ 1.59
COL18A1-207ENST00000473212 COPRSQ9NQ92 184 aa24.98■■□□□ 1.59
COL18A1-207ENST00000473212 CAMTA1Q9Y6Y1 1673 aa24.98■■□□□ 1.59
COL18A1-207ENST00000473212 CYP27B1O15528 508 aa24.97■■□□□ 1.59
COL18A1-207ENST00000473212 PTGS1P23219 599 aa24.97■■□□□ 1.59
COL18A1-207ENST00000473212 ANO6Q4KMQ2 910 aa24.97■■□□□ 1.59
COL18A1-207ENST00000473212 CCDC94Q9BW85 323 aaPredicted RBP24.97■■□□□ 1.59
COL18A1-207ENST00000473212 CYP21A2P08686 494 aa24.97■■□□□ 1.59
COL18A1-207ENST00000473212 LEO1Q8WVC0 666 aaPredicted RBP24.97■■□□□ 1.59
COL18A1-207ENST00000473212 ALDH8A1Q9H2A2 487 aaPredicted RBP24.97■■□□□ 1.59
COL18A1-207ENST00000473212 TRPM3Q9HCF6 1732 aaPredicted RBP24.97■■□□□ 1.59
COL18A1-207ENST00000473212 JCADQ9P266 1359 aa24.97■■□□□ 1.59
COL18A1-207ENST00000473212 A0A087WZG4 1122 aa24.96■■□□□ 1.59
COL18A1-207ENST00000473212 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP24.96■■□□□ 1.59
COL18A1-207ENST00000473212 Q6ZUG5 572 aa24.96■■□□□ 1.59
COL18A1-207ENST00000473212 CBX8Q9HC52 389 aa24.96■■□□□ 1.59
COL18A1-207ENST00000473212 ADAMTS7Q9UKP4 1686 aa24.96■■□□□ 1.59
COL18A1-207ENST00000473212 ATP5JP18859 108 aa24.96■■□□□ 1.59
COL18A1-207ENST00000473212 STOX1Q6ZVD7 989 aa24.96■■□□□ 1.59
COL18A1-207ENST00000473212 PROSER2Q86WR7 435 aaPredicted RBP24.96■■□□□ 1.59
COL18A1-207ENST00000473212 CSB-PGBD3P0DP91 1061 aa24.95■■□□□ 1.59
COL18A1-207ENST00000473212 PGBD1Q96JS3 809 aa24.95■■□□□ 1.59
COL18A1-207ENST00000473212 TATP17735 454 aaPredicted RBP24.95■■□□□ 1.58
COL18A1-207ENST00000473212 HMG20BQ9P0W2 317 aa24.95■■□□□ 1.58
COL18A1-207ENST00000473212 MRC1P22897 1456 aa24.95■■□□□ 1.58
COL18A1-207ENST00000473212 SCN11AQ9UI33 1791 aa24.95■■□□□ 1.58
COL18A1-207ENST00000473212 CEBPZQ03701 1054 aaKnown RBP24.94■■□□□ 1.58
COL18A1-207ENST00000473212 USPL1Q5W0Q7 1092 aa24.94■■□□□ 1.58
COL18A1-207ENST00000473212 BRF1Q92994 677 aa24.94■■□□□ 1.58
COL18A1-207ENST00000473212 NEK1Q96PY6 1258 aa24.94■■□□□ 1.58
COL18A1-207ENST00000473212 NR1I2O75469 434 aa24.94■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms