RNA–Protein interactions for RNA: ENST00000473036.2

TPM3-216, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 746 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-216ENST00000473036 SMC4Q9NTJ3 1288 aa16.72■□□□□ 0.27
TPM3-216ENST00000473036 ZNF219Q9P2Y4 722 aaPredicted RBP16.72■□□□□ 0.27
TPM3-216ENST00000473036 LTBP3Q9NS15 1303 aa16.71■□□□□ 0.27
TPM3-216ENST00000473036 SNED1Q8TER0 1413 aa16.71■□□□□ 0.27
TPM3-216ENST00000473036 H7C1W4 665 aa16.71■□□□□ 0.27
TPM3-216ENST00000473036 IRS4O14654 1257 aaPredicted RBP16.71■□□□□ 0.27
TPM3-216ENST00000473036 C21orf2O43822 256 aa16.71■□□□□ 0.27
TPM3-216ENST00000473036 BCAR3O75815 825 aa16.71■□□□□ 0.27
TPM3-216ENST00000473036 PCCAP05165 728 aaPredicted RBP16.71■□□□□ 0.27
TPM3-216ENST00000473036 BRPF1P55201 1214 aaPredicted RBP16.71■□□□□ 0.27
TPM3-216ENST00000473036 GCKRQ14397 625 aa16.71■□□□□ 0.27
TPM3-216ENST00000473036 NLRP3Q96P20 1036 aa16.71■□□□□ 0.27
TPM3-216ENST00000473036 TIAM2Q8IVF5 1701 aa16.7■□□□□ 0.26
TPM3-216ENST00000473036 NFKBIEO00221 500 aa16.7■□□□□ 0.26
TPM3-216ENST00000473036 HSPA1AP0DMV8 641 aaKnown RBP16.7■□□□□ 0.26
TPM3-216ENST00000473036 HSPA1BP0DMV9 641 aaKnown RBP16.7■□□□□ 0.26
TPM3-216ENST00000473036 LINS1Q8NG48 757 aa16.7■□□□□ 0.26
TPM3-216ENST00000473036 CNKSR1Q969H4 720 aa16.7■□□□□ 0.26
TPM3-216ENST00000473036 NOB1Q9ULX3 412 aaKnown RBP16.7■□□□□ 0.26
TPM3-216ENST00000473036 TNNQ9UQP3 1299 aa16.7■□□□□ 0.26
TPM3-216ENST00000473036 ABCC4O15439 1325 aa16.7■□□□□ 0.26
TPM3-216ENST00000473036 NEXNQ0ZGT2 675 aa16.69■□□□□ 0.26
TPM3-216ENST00000473036 SF3B3Q15393 1217 aaKnown RBP16.69■□□□□ 0.26
TPM3-216ENST00000473036 SOGA3Q5TF21 947 aa16.69■□□□□ 0.26
TPM3-216ENST00000473036 CREBZFQ9NS37 354 aa16.69■□□□□ 0.26
TPM3-216ENST00000473036 CCDC88AQ3V6T2 1871 aa16.69■□□□□ 0.26
TPM3-216ENST00000473036 PTPRCP08575 1304 aa16.69■□□□□ 0.26
TPM3-216ENST00000473036 CDHR2Q9BYE9 1310 aa16.69■□□□□ 0.26
TPM3-216ENST00000473036 MYH3P11055 1940 aa16.68■□□□□ 0.26
TPM3-216ENST00000473036 SLC4A10Q6U841 1118 aa16.68■□□□□ 0.26
TPM3-216ENST00000473036 CRAMP1Q96RY5 1269 aa16.68■□□□□ 0.26
TPM3-216ENST00000473036 POTECB2RU33 542 aa16.67■□□□□ 0.26
TPM3-216ENST00000473036 UBE3BQ7Z3V4 1068 aa16.67■□□□□ 0.26
TPM3-216ENST00000473036 RPGRQ92834 1020 aaKnown RBP16.67■□□□□ 0.26
TPM3-216ENST00000473036 CELF1Q92879 486 aaKnown RBP16.66■□□□□ 0.26
TPM3-216ENST00000473036 RBM17Q96I25 401 aaKnown RBP16.66■□□□□ 0.26
TPM3-216ENST00000473036 SEC31BQ9NQW1 1179 aa16.66■□□□□ 0.26
TPM3-216ENST00000473036 PDE8AO60658 829 aa16.65■□□□□ 0.26
TPM3-216ENST00000473036 ALDH1B1P30837 517 aa16.65■□□□□ 0.26
TPM3-216ENST00000473036 EPHA10Q5JZY3 1008 aa16.65■□□□□ 0.26
TPM3-216ENST00000473036 CHADLQ6NUI6 762 aa16.65■□□□□ 0.26
TPM3-216ENST00000473036 KAZALD1Q96I82 304 aa16.65■□□□□ 0.26
TPM3-216ENST00000473036 CCDC85AQ96PX6 553 aaPredicted RBP16.65■□□□□ 0.26
TPM3-216ENST00000473036 DICER1Q9UPY3 1922 aaKnown RBP16.64■□□□□ 0.26
TPM3-216ENST00000473036 IQCA1LA6NCM1 817 aa16.64■□□□□ 0.25
TPM3-216ENST00000473036 CAPN15O75808 1086 aa16.64■□□□□ 0.25
TPM3-216ENST00000473036 NBPF7P0C2Y1 421 aaPredicted RBP16.64■□□□□ 0.25
TPM3-216ENST00000473036 TTLL11Q8NHH1 800 aa16.64■□□□□ 0.25
TPM3-216ENST00000473036 PLA2G12BQ9BX93 195 aa16.64■□□□□ 0.25
TPM3-216ENST00000473036 SRCIN1Q9C0H9 1055 aa16.64■□□□□ 0.25
TPM3-216ENST00000473036 TAOK3Q9H2K8 898 aa16.64■□□□□ 0.25
TPM3-216ENST00000473036 LRRC37AA6NMS7 1700 aa16.63■□□□□ 0.25
TPM3-216ENST00000473036 GRM8O00222 908 aa16.63■□□□□ 0.25
TPM3-216ENST00000473036 PPEF1O14829 653 aaPredicted RBP16.63■□□□□ 0.25
TPM3-216ENST00000473036 ALDH1L1O75891 902 aa16.63■□□□□ 0.25
TPM3-216ENST00000473036 CTSWP56202 376 aa16.63■□□□□ 0.25
TPM3-216ENST00000473036 FOXO4P98177 505 aa16.63■□□□□ 0.25
TPM3-216ENST00000473036 GRAPQ13588 217 aa16.63■□□□□ 0.25
TPM3-216ENST00000473036 GRAPLQ8TC17 118 aaPredicted RBP16.63■□□□□ 0.25
TPM3-216ENST00000473036 CSF1RP07333 972 aa16.62■□□□□ 0.25
TPM3-216ENST00000473036 TRIM27P14373 513 aa16.62■□□□□ 0.25
TPM3-216ENST00000473036 DDX46Q7L014 1031 aaKnown RBP16.62■□□□□ 0.25
TPM3-216ENST00000473036 YTHDC1Q96MU7 727 aaKnown RBP16.62■□□□□ 0.25
TPM3-216ENST00000473036 USP44Q9H0E7 712 aa16.62■□□□□ 0.25
TPM3-216ENST00000473036 GREM2Q9H772 168 aa16.62■□□□□ 0.25
TPM3-216ENST00000473036 PRDM10Q9NQV6 1147 aa16.62■□□□□ 0.25
TPM3-216ENST00000473036 UTYO14607 1347 aa16.62■□□□□ 0.25
TPM3-216ENST00000473036 COL4A5P29400 1685 aa16.62■□□□□ 0.25
TPM3-216ENST00000473036 SPEF2Q9C093 1822 aa16.61■□□□□ 0.25
TPM3-216ENST00000473036 DUOX1Q9NRD9 1551 aa16.61■□□□□ 0.25
TPM3-216ENST00000473036 ARHGAP45Q92619 1136 aa16.61■□□□□ 0.25
TPM3-216ENST00000473036 L3MBTL3Q96JM7 780 aaPredicted RBP16.61■□□□□ 0.25
TPM3-216ENST00000473036 ATP6V0A2Q9Y487 856 aa16.61■□□□□ 0.25
TPM3-216ENST00000473036 LTBP1Q14766 1721 aa16.61■□□□□ 0.25
TPM3-216ENST00000473036 BBOX1O75936 387 aa16.6■□□□□ 0.25
TPM3-216ENST00000473036 CCDC93Q567U6 631 aa16.6■□□□□ 0.25
TPM3-216ENST00000473036 LDHDQ86WU2 507 aa16.6■□□□□ 0.25
TPM3-216ENST00000473036 SUCLG2Q96I99 432 aa16.6■□□□□ 0.25
TPM3-216ENST00000473036 CNTNAP1P78357 1384 aa16.6■□□□□ 0.25
TPM3-216ENST00000473036 FAM161AQ3B820 660 aa16.59■□□□□ 0.25
TPM3-216ENST00000473036 CCDC152Q4G0S7 254 aa16.59■□□□□ 0.25
TPM3-216ENST00000473036 SP8Q8IXZ3 490 aa16.59■□□□□ 0.25
TPM3-216ENST00000473036 FRAT1Q92837 279 aaPredicted RBP16.59■□□□□ 0.25
TPM3-216ENST00000473036 API5Q9BZZ5 524 aaKnown RBP16.59■□□□□ 0.25
TPM3-216ENST00000473036 KIF16BQ96L93 1317 aa16.59■□□□□ 0.25
TPM3-216ENST00000473036 RTL9Q8NET4 1388 aa16.59■□□□□ 0.25
TPM3-216ENST00000473036 RPS8P62241 208 aaKnown RBP16.58■□□□□ 0.24
TPM3-216ENST00000473036 ATF7IPQ6VMQ6 1270 aa16.58■□□□□ 0.24
TPM3-216ENST00000473036 ZNF277Q9NRM2 450 aaPredicted RBP16.58■□□□□ 0.24
TPM3-216ENST00000473036 C9orf78Q9NZ63 289 aaPredicted RBP16.58■□□□□ 0.24
TPM3-216ENST00000473036 PASKQ96RG2 1323 aa16.58■□□□□ 0.24
TPM3-216ENST00000473036 SCN4AP35499 1836 aa16.58■□□□□ 0.24
TPM3-216ENST00000473036 WTIPA6NIX2 430 aaPredicted RBP16.57■□□□□ 0.24
TPM3-216ENST00000473036 RLBP1P12271 317 aa16.57■□□□□ 0.24
TPM3-216ENST00000473036 FKBP4Q02790 459 aaKnown RBP eCLIP16.57■□□□□ 0.24
TPM3-216ENST00000473036 INTS3Q68E01 1043 aaKnown RBP16.57■□□□□ 0.24
TPM3-216ENST00000473036 ANKRD44Q8N8A2 993 aa16.57■□□□□ 0.24
TPM3-216ENST00000473036 DDNO94850 711 aaPredicted RBP16.56■□□□□ 0.24
TPM3-216ENST00000473036 HSP90B1P14625 803 aaKnown RBP16.56■□□□□ 0.24
TPM3-216ENST00000473036 CCT4P50991 539 aaKnown RBP16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms