RNA–Protein interactions for RNA: ENST00000472490.1

BRCA1-211, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 3

Gene BRCA1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-211ENST00000472490 C9orf78Q9NZ63 289 aaPredicted RBP17.97■□□□□ 0.47
BRCA1-211ENST00000472490 ZNF219Q9P2Y4 722 aaPredicted RBP17.97■□□□□ 0.47
BRCA1-211ENST00000472490 COL11A2P13942 1736 aaPredicted RBP17.97■□□□□ 0.47
BRCA1-211ENST00000472490 TNRC6CQ9HCJ0 1690 aaKnown RBP17.96■□□□□ 0.47
BRCA1-211ENST00000472490 PPEF1O14829 653 aaPredicted RBP17.96■□□□□ 0.47
BRCA1-211ENST00000472490 ABCC4O15439 1325 aa17.96■□□□□ 0.46
BRCA1-211ENST00000472490 GOLGB1Q14789 3259 aaKnown RBP17.95■□□□□ 0.46
BRCA1-211ENST00000472490 GRM8O00222 908 aa17.95■□□□□ 0.46
BRCA1-211ENST00000472490 CTSWP56202 376 aa17.95■□□□□ 0.46
BRCA1-211ENST00000472490 JARID2Q92833 1246 aaPredicted RBP17.95■□□□□ 0.46
BRCA1-211ENST00000472490 PLA2G12BQ9BX93 195 aa17.95■□□□□ 0.46
BRCA1-211ENST00000472490 TAOK3Q9H2K8 898 aa17.95■□□□□ 0.46
BRCA1-211ENST00000472490 UTRNP46939 3433 aa17.94■□□□□ 0.46
BRCA1-211ENST00000472490 LMNB1P20700 586 aa17.94■□□□□ 0.46
BRCA1-211ENST00000472490 CCT4P50991 539 aaKnown RBP17.94■□□□□ 0.46
BRCA1-211ENST00000472490 ATP6V0A2Q9Y487 856 aa17.94■□□□□ 0.46
BRCA1-211ENST00000472490 LTBP3Q9NS15 1303 aa17.94■□□□□ 0.46
BRCA1-211ENST00000472490 ARFGEF1Q9Y6D6 1849 aa17.93■□□□□ 0.46
BRCA1-211ENST00000472490 NFKBIEO00221 500 aa17.92■□□□□ 0.46
BRCA1-211ENST00000472490 BCAR3O75815 825 aa17.92■□□□□ 0.46
BRCA1-211ENST00000472490 CASP7P55210 303 aa17.92■□□□□ 0.46
BRCA1-211ENST00000472490 FKBP4Q02790 459 aaKnown RBP eCLIP17.92■□□□□ 0.46
BRCA1-211ENST00000472490 SP8Q8IXZ3 490 aa17.92■□□□□ 0.46
BRCA1-211ENST00000472490 TTLL11Q8NHH1 800 aa17.92■□□□□ 0.46
BRCA1-211ENST00000472490 FRAT1Q92837 279 aaPredicted RBP17.92■□□□□ 0.46
BRCA1-211ENST00000472490 CDC5LQ99459 802 aaKnown RBP17.92■□□□□ 0.46
BRCA1-211ENST00000472490 RPS8P62241 208 aaKnown RBP17.91■□□□□ 0.46
BRCA1-211ENST00000472490 C9orf131Q5VYM1 1079 aa17.91■□□□□ 0.46
BRCA1-211ENST00000472490 ATF7IPQ6VMQ6 1270 aa17.91■□□□□ 0.46
BRCA1-211ENST00000472490 RNF181Q9P0P0 153 aa17.91■□□□□ 0.46
BRCA1-211ENST00000472490 HDAC5Q9UQL6 1122 aa17.91■□□□□ 0.46
BRCA1-211ENST00000472490 RASSF7Q02833 373 aa17.9■□□□□ 0.46
BRCA1-211ENST00000472490 ANKRD18AQ8IVF6 992 aa17.9■□□□□ 0.46
BRCA1-211ENST00000472490 PSMD1Q99460 953 aa17.9■□□□□ 0.46
BRCA1-211ENST00000472490 UTYO14607 1347 aa17.9■□□□□ 0.46
BRCA1-211ENST00000472490 ZC3H4Q9UPT8 1303 aaKnown RBP17.9■□□□□ 0.46
BRCA1-211ENST00000472490 RTL9Q8NET4 1388 aa17.9■□□□□ 0.46
BRCA1-211ENST00000472490 CSF1RP07333 972 aa17.89■□□□□ 0.45
BRCA1-211ENST00000472490 ZKSCAN2Q63HK3 967 aa17.89■□□□□ 0.45
BRCA1-211ENST00000472490 SUPT20HQ8NEM7 779 aa17.89■□□□□ 0.45
BRCA1-211ENST00000472490 CELF1Q92879 486 aaKnown RBP17.89■□□□□ 0.45
BRCA1-211ENST00000472490 CCDC85AQ96PX6 553 aaPredicted RBP17.89■□□□□ 0.45
BRCA1-211ENST00000472490 DDX60Q8IY21 1712 aaKnown RBP17.89■□□□□ 0.45
BRCA1-211ENST00000472490 OLFM4Q6UX06 510 aa17.88■□□□□ 0.45
BRCA1-211ENST00000472490 DPP8Q6V1X1 898 aaPredicted RBP17.88■□□□□ 0.45
BRCA1-211ENST00000472490 VPS33BQ9H267 617 aa17.88■□□□□ 0.45
BRCA1-211ENST00000472490 GREM2Q9H772 168 aa17.88■□□□□ 0.45
BRCA1-211ENST00000472490 LAMB2P55268 1798 aa17.88■□□□□ 0.45
BRCA1-211ENST00000472490 SLX4Q8IY92 1834 aa17.88■□□□□ 0.45
BRCA1-211ENST00000472490 NBPF7P0C2Y1 421 aaPredicted RBP17.87■□□□□ 0.45
BRCA1-211ENST00000472490 TRIM27P14373 513 aa17.87■□□□□ 0.45
BRCA1-211ENST00000472490 ITGA6P23229 1130 aa17.87■□□□□ 0.45
BRCA1-211ENST00000472490 IGHMBP2P38935 993 aaKnown RBP17.87■□□□□ 0.45
BRCA1-211ENST00000472490 INTS3Q68E01 1043 aaKnown RBP17.87■□□□□ 0.45
BRCA1-211ENST00000472490 MPNDQ8N594 471 aa17.87■□□□□ 0.45
BRCA1-211ENST00000472490 YTHDC1Q96MU7 727 aaKnown RBP17.87■□□□□ 0.45
BRCA1-211ENST00000472490 SEC31BQ9NQW1 1179 aa17.87■□□□□ 0.45
BRCA1-211ENST00000472490 ANKRD18BA2A2Z9 1011 aa17.86■□□□□ 0.45
BRCA1-211ENST00000472490 FOXO4P98177 505 aa17.86■□□□□ 0.45
BRCA1-211ENST00000472490 IFIT5Q13325 482 aaKnown RBP17.86■□□□□ 0.45
BRCA1-211ENST00000472490 CCDC57Q2TAC2 916 aa17.86■□□□□ 0.45
BRCA1-211ENST00000472490 FTSJ3Q8IY81 847 aaKnown RBP17.86■□□□□ 0.45
BRCA1-211ENST00000472490 USP44Q9H0E7 712 aa17.86■□□□□ 0.45
BRCA1-211ENST00000472490 CHMP3Q9Y3E7 222 aa17.86■□□□□ 0.45
BRCA1-211ENST00000472490 UBTFL1P0CB47 393 aaPredicted RBP17.85■□□□□ 0.45
BRCA1-211ENST00000472490 MS4A1P11836 297 aa17.85■□□□□ 0.45
BRCA1-211ENST00000472490 IARSP41252 1262 aaKnown RBP17.85■□□□□ 0.45
BRCA1-211ENST00000472490 LMBR1LQ6UX01 489 aa17.85■□□□□ 0.45
BRCA1-211ENST00000472490 MPHOSPH8Q99549 860 aa17.85■□□□□ 0.45
BRCA1-211ENST00000472490 RTFDC1Q9BY42 306 aaPredicted RBP17.85■□□□□ 0.45
BRCA1-211ENST00000472490 ZNF277Q9NRM2 450 aaPredicted RBP17.85■□□□□ 0.45
BRCA1-211ENST00000472490 BSDC1Q9NW68 430 aaPredicted RBP17.85■□□□□ 0.45
BRCA1-211ENST00000472490 RCAN3Q9UKA8 241 aa17.85■□□□□ 0.45
BRCA1-211ENST00000472490 NSFL1CQ9UNZ2 370 aaKnown RBP17.85■□□□□ 0.45
BRCA1-211ENST00000472490 FAM161AQ3B820 660 aa17.84■□□□□ 0.45
BRCA1-211ENST00000472490 DPY19L2Q6NUT2 758 aa17.84■□□□□ 0.45
BRCA1-211ENST00000472490 ZNF784Q8NCA9 323 aaPredicted RBP17.84■□□□□ 0.45
BRCA1-211ENST00000472490 JDP2Q8WYK2 163 aa17.84■□□□□ 0.45
BRCA1-211ENST00000472490 SUCLG2Q96I99 432 aa17.84■□□□□ 0.45
BRCA1-211ENST00000472490 CHD4Q14839 1912 aa17.84■□□□□ 0.45
BRCA1-211ENST00000472490 SNED1Q8TER0 1413 aa17.83■□□□□ 0.45
BRCA1-211ENST00000472490 GNAI3P08754 354 aa17.83■□□□□ 0.44
BRCA1-211ENST00000472490 TAF7LQ5H9L4 462 aa17.83■□□□□ 0.44
BRCA1-211ENST00000472490 DZIP1LQ8IYY4 767 aaKnown RBP17.83■□□□□ 0.44
BRCA1-211ENST00000472490 CLUAP1Q96AJ1 413 aa17.83■□□□□ 0.44
BRCA1-211ENST00000472490 ANKIB1Q9P2G1 1089 aa17.83■□□□□ 0.44
BRCA1-211ENST00000472490 KDM2BQ8NHM5 1336 aa17.82■□□□□ 0.44
BRCA1-211ENST00000472490 PRELPP51888 382 aa17.82■□□□□ 0.44
BRCA1-211ENST00000472490 EYA3Q99504 573 aa17.82■□□□□ 0.44
BRCA1-211ENST00000472490 GPBP1L1Q9HC44 474 aaPredicted RBP17.82■□□□□ 0.44
BRCA1-211ENST00000472490 PODXL2Q9NZ53 605 aa17.82■□□□□ 0.44
BRCA1-211ENST00000472490 PPIP5K2O43314 1243 aa17.81■□□□□ 0.44
BRCA1-211ENST00000472490 RABL6Q3YEC7 729 aaPredicted RBP17.81■□□□□ 0.44
BRCA1-211ENST00000472490 EPHA10Q5JZY3 1008 aa17.81■□□□□ 0.44
BRCA1-211ENST00000472490 LARGE2Q8N3Y3 721 aa17.81■□□□□ 0.44
BRCA1-211ENST00000472490 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.81■□□□□ 0.44
BRCA1-211ENST00000472490 BICC1Q9H694 974 aaKnown RBP17.81■□□□□ 0.44
BRCA1-211ENST00000472490 CACNA1SQ13698 1873 aa17.8■□□□□ 0.44
BRCA1-211ENST00000472490 XDHP47989 1333 aa17.8■□□□□ 0.44
BRCA1-211ENST00000472490 C6orf229H3BNL8 230 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms